Wall clock time and date at job start Tue Mar 31 2020 22:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86794 * 119.99775 * 2 1 4 4 H 1.48497 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47424 * 300.00211 * 3 2 1 6 6 H 1.48498 * 109.47130 * 60.00092 * 3 2 1 7 7 C 1.39004 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 199.88565 * 7 2 1 9 9 N 1.36895 * 120.00518 * 19.88210 * 7 2 1 10 10 C 1.38210 * 125.62308 * 214.27910 * 9 7 2 11 11 C 1.46891 * 125.43556 * 0.02562 * 10 9 7 12 12 O 1.21666 * 120.00002 * 15.68285 * 11 10 9 13 13 N 1.34770 * 120.00001 * 195.68230 * 11 10 9 14 14 C 1.50247 * 130.83816 * 6.62848 * 13 11 10 15 15 C 1.57787 * 100.16241 * 125.52952 * 14 13 11 16 16 C 1.54849 * 103.27446 * 33.70422 * 15 14 13 17 17 C 1.50243 * 130.84141 * 186.97115 * 13 11 10 18 18 C 1.52998 * 115.85355 * 0.31617 * 17 13 11 19 19 O 1.42908 * 109.46847 * 180.02562 * 18 17 13 20 20 C 1.55838 * 101.05256 * 125.99312 * 17 13 11 21 21 C 1.54224 * 103.56706 * 32.85106 * 20 17 13 22 22 C 1.36115 * 109.12653 * 179.97438 * 10 9 7 23 23 C 1.41705 * 107.75364 * 0.02562 * 22 10 9 24 24 C 1.40013 * 133.35453 * 179.97438 * 23 22 10 25 25 C 1.36580 * 119.83305 * 180.02562 * 24 23 22 26 26 C 1.38854 * 120.59583 * 359.97360 * 25 24 23 27 27 C 1.37841 * 120.63535 * 0.25432 * 26 25 24 28 28 C 1.37836 * 125.61371 * 34.28020 * 9 7 2 29 29 H 0.96998 * 120.00119 * 1.42904 * 1 2 3 30 30 H 1.08996 * 115.85529 * 0.39508 * 14 13 11 31 31 H 1.09002 * 111.15197 * 275.05625 * 15 14 13 32 32 H 1.08998 * 110.39906 * 151.99211 * 15 14 13 33 33 H 1.08998 * 110.62780 * 240.98808 * 16 15 14 34 34 H 1.09006 * 110.62422 * 117.96856 * 16 15 14 35 35 H 1.09000 * 109.47839 * 300.00072 * 18 17 13 36 36 H 1.08999 * 109.47259 * 60.00614 * 18 17 13 37 37 H 0.96702 * 113.99898 * 180.02562 * 19 18 17 38 38 H 1.09004 * 110.62426 * 151.42824 * 20 17 13 39 39 H 1.08996 * 110.62680 * 274.45086 * 20 17 13 40 40 H 1.09000 * 110.49838 * 241.50648 * 21 20 17 41 41 H 1.09001 * 110.77835 * 118.62301 * 21 20 17 42 42 H 1.08006 * 126.12459 * 179.97438 * 22 10 9 43 43 H 1.08002 * 120.08265 * 0.03285 * 24 23 22 44 44 H 1.07996 * 119.69882 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.67535 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.09524 * 179.70065 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.7074 1.3464 -0.0006 5 1 1.8887 2.3965 -1.2124 6 1 1.8887 2.3964 1.2125 7 6 2.0085 -1.2038 -0.0005 8 1 3.0403 -1.2319 0.3176 9 7 1.3853 -2.3539 -0.4042 10 6 1.6125 -3.6161 0.1111 11 6 2.5633 -3.9400 1.1828 12 8 3.0155 -3.0538 1.8832 13 7 2.9347 -5.2187 1.3904 14 6 2.6410 -6.4667 0.6070 15 6 4.1082 -6.9921 0.3599 16 6 4.8597 -6.5653 1.6448 17 6 3.7644 -5.8364 2.4801 18 6 4.2822 -4.8742 3.5511 19 8 5.0498 -5.6007 4.5130 20 6 2.8056 -6.9550 2.9880 21 6 2.0434 -7.3826 1.7173 22 6 0.8137 -4.5109 -0.5323 23 6 0.0511 -3.7982 -1.4908 24 6 -0.9178 -4.1816 -2.4261 25 6 -1.4904 -3.2419 -3.2351 26 6 -1.1210 -1.9069 -3.1391 27 6 -0.1662 -1.5059 -2.2294 28 6 0.4278 -2.4439 -1.3916 29 1 -0.4850 0.8398 -0.0209 30 1 2.0306 -6.3345 -0.2863 31 1 4.5515 -6.5226 -0.5182 32 1 4.1107 -8.0771 0.2561 33 1 5.6758 -5.8841 1.4039 34 1 5.2326 -7.4389 2.1796 35 1 4.9098 -4.1148 3.0846 36 1 3.4385 -4.3940 4.0467 37 1 5.4101 -5.0527 5.2237 38 1 3.3734 -7.7916 3.3954 39 1 2.1147 -6.5597 3.7325 40 1 0.9753 -7.1990 1.8329 41 1 2.2290 -8.4324 1.4899 42 1 0.7696 -5.5739 -0.3463 43 1 -1.2117 -5.2176 -2.5074 44 1 -2.2378 -3.5399 -3.9555 45 1 -1.5837 -1.1762 -3.7860 46 1 0.1180 -0.4659 -2.1655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646292158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:25 Heat of formation + Delta-G solvation = -8.703659 kcal Electronic energy + Delta-G solvation = -30680.117013 eV Core-core repulsion = 26728.253160 eV Total energy + Delta-G solvation = -3951.863852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36659 -41.53065 -39.07024 -37.58455 -37.42578 -35.59485 -33.01220 -32.16270 -31.53168 -31.43411 -30.69664 -29.40033 -26.83139 -26.48334 -25.10522 -23.21286 -23.14052 -22.40688 -21.63972 -20.64383 -19.75243 -19.31838 -18.23486 -17.75442 -17.32371 -16.98131 -16.77694 -16.64680 -16.37036 -16.07041 -15.64771 -15.13180 -14.88751 -14.67575 -14.60376 -14.45056 -14.31141 -13.99570 -13.77540 -13.59467 -13.53486 -13.45590 -13.10446 -12.93963 -12.60176 -12.54938 -12.35394 -12.25347 -12.19232 -12.06159 -11.74034 -11.57134 -11.37802 -11.19740 -10.90992 -10.87642 -10.77860 -10.40168 -9.82211 -9.00104 -8.63107 -8.33091 -6.35447 0.15294 1.09131 1.25525 1.32387 1.40393 1.44523 1.62228 2.09461 2.42205 2.85286 2.93667 3.30702 3.39117 3.45547 3.54247 3.59369 3.91319 4.02262 4.08677 4.15963 4.26626 4.29776 4.37473 4.43884 4.45798 4.51672 4.66662 4.69645 4.73568 4.78672 4.86889 5.00339 5.04266 5.06526 5.08988 5.11026 5.16676 5.23015 5.26780 5.37249 5.39719 5.46996 5.50640 5.71844 5.91673 5.98131 6.26476 6.33029 6.56633 6.57442 6.71972 6.95390 7.27212 7.45761 8.32947 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.004688 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.577507 B = 5971.478364 C = 7894.914531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.013 3.987 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.268 1.268 7 C -0.363 4.363 8 H 0.089 0.911 9 N -0.263 5.263 10 C -0.052 4.052 11 C 0.602 3.398 12 O -0.580 6.580 13 N -0.620 5.620 14 C 0.101 3.899 15 C -0.122 4.122 16 C -0.111 4.111 17 C 0.144 3.856 18 C 0.115 3.885 19 O -0.566 6.566 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.192 4.192 23 C -0.149 4.149 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.088 4.088 28 C 0.055 3.945 29 H 0.284 0.716 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.400 0.600 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.173 0.827 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -15.476 0.328 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.196 4.196 3 Si 0.813 3.187 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.107 0.893 9 N 0.075 4.925 10 C -0.167 4.167 11 C 0.394 3.606 12 O -0.461 6.461 13 N -0.356 5.356 14 C 0.000 4.000 15 C -0.160 4.160 16 C -0.149 4.149 17 C 0.061 3.939 18 C 0.036 3.964 19 O -0.374 6.374 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.219 4.219 23 C -0.154 4.154 24 C -0.104 4.104 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.108 4.108 28 C -0.060 4.060 29 H 0.094 0.906 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.250 0.750 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.190 0.810 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.150 0.850 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.079 -14.899 0.497 15.455 hybrid contribution 0.440 2.382 0.871 2.574 sum 4.519 -12.517 1.369 13.378 Atomic orbital electron populations 1.70128 1.07602 1.30015 1.40339 1.26410 0.96125 1.03272 0.93784 0.84934 0.78634 0.76065 0.79115 1.19000 1.17896 1.19327 1.19867 0.96977 0.84650 1.47607 0.89281 1.40158 1.26223 1.04756 1.21355 1.20127 1.06396 0.87317 1.02906 1.16908 0.79766 0.81394 0.82523 1.90716 1.57589 1.47322 1.50484 1.50287 1.51550 1.05231 1.28541 1.24843 0.98137 0.80843 0.96130 1.23294 0.93000 1.02885 0.96847 1.22802 0.95756 1.00292 0.96098 1.22975 0.92528 0.91072 0.87364 1.21358 0.93878 0.91828 0.89287 1.86283 1.71394 1.39434 1.40283 1.22714 0.97288 0.97268 0.97661 1.22844 0.99666 1.00634 0.92802 1.21041 1.01143 0.98818 1.00850 1.18452 1.02673 0.92118 1.02118 1.20484 0.95199 1.00250 0.94475 1.20755 1.02459 0.92364 1.01729 1.20987 0.98251 0.97387 0.99500 1.20263 0.97979 0.97161 0.95401 1.18653 0.97449 0.95833 0.94023 0.90574 0.84861 0.92037 0.86471 0.93280 0.87676 0.94779 0.95060 0.74992 0.87660 0.92999 0.91317 0.86280 0.80999 0.83757 0.83483 0.85033 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.21 10.55 21.67 0.23 -47.98 16 2 C 0.01 0.70 4.39 84.95 0.37 1.07 16 3 Si 0.99 43.35 29.60 68.60 2.03 45.38 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.36 -21.64 8.83 84.09 0.74 -20.90 16 8 H 0.09 5.54 7.10 -2.91 -0.02 5.52 16 9 N -0.26 -15.09 2.86 -331.34 -0.95 -16.03 16 10 C -0.05 -2.62 6.70 39.91 0.27 -2.35 16 11 C 0.60 28.83 7.85 86.51 0.68 29.51 16 12 O -0.58 -31.93 13.83 -4.24 -0.06 -31.99 16 13 N -0.62 -21.85 2.88 -713.99 -2.06 -23.90 16 14 C 0.10 2.50 4.43 46.94 0.21 2.71 16 15 C -0.12 -2.43 6.54 32.92 0.22 -2.22 16 16 C -0.11 -2.56 6.01 32.21 0.19 -2.36 16 17 C 0.14 4.15 1.47 4.84 0.01 4.15 16 18 C 0.12 3.64 5.47 71.98 0.39 4.03 16 19 O -0.57 -13.50 13.47 -148.98 -2.01 -15.51 16 20 C -0.11 -2.48 5.98 31.99 0.19 -2.29 16 21 C -0.12 -2.30 6.43 31.99 0.21 -2.09 16 22 C -0.19 -8.23 9.42 22.63 0.21 -8.02 16 23 C -0.15 -6.82 6.16 -21.33 -0.13 -6.96 16 24 C -0.09 -3.15 10.06 22.31 0.22 -2.93 16 25 C -0.15 -5.40 9.97 22.03 0.22 -5.18 16 26 C -0.14 -5.67 10.02 22.32 0.22 -5.45 16 27 C -0.09 -4.39 8.46 22.38 0.19 -4.20 16 28 C 0.05 2.93 6.11 39.06 0.24 3.17 16 29 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.13 3.33 4.78 -2.39 -0.01 3.32 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 1.42 7.91 -2.39 -0.02 1.40 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.87 7.85 -2.38 -0.02 1.85 16 35 H 0.03 1.24 7.69 -2.39 -0.02 1.22 16 36 H 0.03 1.13 7.97 -2.39 -0.02 1.11 16 37 H 0.40 6.16 9.12 -74.06 -0.68 5.49 16 38 H 0.11 1.82 7.85 -2.38 -0.02 1.80 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.12 1.34 7.91 -2.39 -0.02 1.32 16 42 H 0.17 5.70 5.14 -2.91 -0.01 5.69 16 43 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 44 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 46 H 0.09 4.94 6.14 -2.91 -0.02 4.93 16 Total: -1.00 -78.49 363.31 2.19 -76.30 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.35 Total: 34.06 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.65 Total: -20.32 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -2.78 Total: -87.92 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -2.06 Total: -47.50 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.49 2.19 -76.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646292158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.596 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds