Wall clock time and date at job start Tue Mar 31 2020 23:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48496 * 109.47767 * 240.00157 * 3 2 1 5 5 H 1.48505 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99844 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.48141 * 127.83691 * 180.02562 * 13 11 10 15 15 C 1.54404 * 104.58360 * 219.69706 * 14 13 11 16 16 H 1.08996 * 111.18638 * 215.51607 * 15 14 13 17 17 C 1.54367 * 104.91926 * 335.81938 * 15 14 13 18 18 H 1.08998 * 111.03657 * 240.30966 * 17 15 14 19 19 C 1.48141 * 127.83976 * 359.68407 * 13 11 10 20 20 C 1.52978 * 108.94906 * 117.78986 * 17 15 14 21 21 H 1.09004 * 109.38688 * 180.20341 * 20 17 15 22 22 C 1.53011 * 109.56186 * 60.29147 * 20 17 15 23 23 C 1.53119 * 109.18235 * 299.17167 * 22 20 17 24 24 C 1.53172 * 108.87851 * 92.76039 * 15 14 13 25 25 H 1.09003 * 109.63554 * 64.50819 * 24 15 14 26 26 C 1.53057 * 109.16139 * 303.80754 * 24 15 14 27 27 N 1.46729 * 109.64020 * 299.87326 * 20 17 15 28 28 C 1.46903 * 111.00162 * 184.65656 * 27 20 17 29 29 C 1.52991 * 109.47347 * 170.00197 * 28 27 20 30 30 O 1.42900 * 109.47357 * 64.99902 * 29 28 27 31 31 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 33 33 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 34 34 H 1.09001 * 110.41531 * 338.47032 * 14 13 11 35 35 H 1.09001 * 110.41193 * 100.80217 * 14 13 11 36 36 H 1.09006 * 110.39492 * 259.32769 * 19 13 11 37 37 H 1.08998 * 110.40089 * 21.72505 * 19 13 11 38 38 H 1.09004 * 109.51943 * 59.07784 * 22 20 17 39 39 H 1.08993 * 109.52150 * 179.26240 * 22 20 17 40 40 H 1.08999 * 109.56133 * 119.67863 * 23 22 20 41 41 H 1.09001 * 109.56280 * 240.00841 * 23 22 20 42 42 H 1.08997 * 109.40896 * 60.21414 * 26 24 15 43 43 H 1.08996 * 109.40723 * 180.02562 * 26 24 15 44 44 H 1.08997 * 109.46789 * 290.00433 * 28 27 20 45 45 H 1.09002 * 109.46775 * 49.99678 * 28 27 20 46 46 H 1.08997 * 109.47727 * 184.99846 * 29 28 27 47 47 H 1.09000 * 109.47294 * 305.00417 * 29 28 27 48 48 H 0.96696 * 114.00571 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.5186 -7.7884 -0.0003 15 6 3.5552 -8.4204 0.9537 16 1 3.8550 -9.4102 0.6097 17 6 4.7491 -7.4420 0.9477 18 1 5.6547 -7.9320 0.5902 19 6 4.3248 -6.3010 -0.0078 20 6 4.9463 -6.8903 2.3609 21 1 5.7861 -6.1953 2.3641 22 6 5.2367 -8.0426 3.3248 23 6 4.0466 -9.0060 3.3303 24 6 2.9582 -8.4831 2.3629 25 1 2.0990 -9.1539 2.3672 26 6 2.5304 -7.0771 2.7903 27 7 3.7339 -6.1826 2.7877 28 6 3.9293 -5.5459 4.0971 29 6 2.7488 -4.6194 4.3949 30 8 1.5558 -5.3950 4.5260 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8895 33 1 3.1245 -3.7314 -0.8905 34 1 1.5081 -7.9506 0.3749 35 1 2.6215 -8.2012 -1.0039 36 1 4.7049 -6.4831 -1.0131 37 1 4.6795 -5.3402 0.3650 38 1 6.1324 -8.5722 3.0000 39 1 5.3901 -7.6476 4.3290 40 1 4.3746 -9.9930 3.0043 41 1 3.6342 -9.0708 4.3372 42 1 1.7811 -6.6993 2.0946 43 1 2.1053 -7.1171 3.7931 44 1 3.9925 -6.3134 4.8684 45 1 4.8523 -4.9662 4.0850 46 1 2.9354 -4.0802 5.3236 47 1 2.6310 -3.9070 3.5785 48 1 0.7651 -4.8716 4.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656657979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:10 Heat of formation + Delta-G solvation = -66.932570 kcal Electronic energy + Delta-G solvation = -30025.924010 eV Core-core repulsion = 26206.979114 eV Total energy + Delta-G solvation = -3818.944896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48489 -38.55333 -37.02927 -35.68385 -33.50071 -32.37359 -32.00145 -30.88963 -29.19760 -28.54624 -27.23009 -25.43922 -24.37389 -23.75220 -21.93021 -21.76367 -20.85040 -19.20628 -17.66197 -17.42605 -16.92580 -16.75667 -16.33705 -16.12410 -15.60865 -14.81187 -14.73940 -14.61629 -14.37920 -13.78590 -13.75379 -13.60484 -13.15863 -13.06093 -12.72358 -12.65249 -12.41729 -12.35658 -12.16887 -11.99478 -11.90830 -11.72614 -11.57140 -11.28786 -11.21489 -11.00825 -10.97545 -10.75138 -10.69160 -10.54403 -10.12984 -10.00848 -9.74437 -9.62181 -9.16721 -9.00632 -8.26197 -8.12376 -7.98162 -6.40679 -6.16047 -3.84654 3.10011 3.25478 3.29773 3.32852 3.34579 3.78885 3.88094 4.26620 4.32337 4.36375 4.40469 4.50823 4.90309 4.92116 4.98651 5.08000 5.10321 5.14293 5.18767 5.27268 5.28563 5.37114 5.40613 5.48056 5.53389 5.63401 5.66762 5.70880 5.72535 5.78698 5.82625 5.84999 5.85729 5.92260 5.97866 6.05731 6.09574 6.10903 6.15305 6.30478 6.36913 6.55876 6.65770 7.19581 7.27598 7.64644 7.82667 8.01334 8.40810 8.83246 9.29165 10.91240 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.003836 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.411767 B = 7296.949875 C = 7856.449023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.070 0.930 9 S -0.063 6.063 10 C -0.140 4.140 11 C 0.566 3.434 12 O -0.527 6.527 13 N -0.612 5.612 14 C 0.111 3.889 15 C -0.092 4.092 16 H 0.083 0.917 17 C -0.089 4.089 18 H 0.088 0.912 19 C 0.119 3.881 20 C 0.094 3.906 21 H 0.081 0.919 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.104 4.104 25 H 0.077 0.923 26 C 0.067 3.933 27 N -0.522 5.522 28 C 0.060 3.940 29 C 0.076 3.924 30 O -0.569 6.569 31 H 0.268 0.732 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -17.934 7.274 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.742 3.258 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.680 4.680 8 H 0.088 0.912 9 S 0.164 5.836 10 C -0.290 4.290 11 C 0.355 3.645 12 O -0.402 6.402 13 N -0.348 5.348 14 C -0.013 4.013 15 C -0.111 4.111 16 H 0.101 0.899 17 C -0.109 4.109 18 H 0.106 0.894 19 C -0.005 4.005 20 C -0.015 4.015 21 H 0.099 0.901 22 C -0.188 4.188 23 C -0.150 4.150 24 C -0.123 4.123 25 H 0.095 0.905 26 C -0.059 4.059 27 N -0.246 5.246 28 C -0.068 4.068 29 C -0.002 4.002 30 O -0.376 6.376 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.099 0.901 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.966 -18.107 6.817 22.239 hybrid contribution 1.969 1.078 0.755 2.368 sum 12.935 -17.028 7.572 22.685 Atomic orbital electron populations 1.70016 1.05901 1.27365 1.47138 1.24956 0.94965 0.98842 0.94727 0.86281 0.79270 0.81515 0.78756 1.19989 1.20886 1.20037 1.22826 0.94808 0.91816 1.58550 0.91186 1.85336 1.05422 0.96148 1.96686 1.23435 1.05972 0.95084 1.04551 1.19725 0.85293 0.85103 0.74346 1.90690 1.15046 1.85129 1.49372 1.48710 1.06422 1.05009 1.74647 1.22226 0.99451 0.81389 0.98216 1.22201 0.95205 0.98363 0.95347 0.89877 1.22241 0.97975 0.95806 0.94862 0.89379 1.22237 0.81012 0.99551 0.97670 1.21507 0.92921 0.93672 0.93441 0.90130 1.22161 0.98408 0.97942 1.00302 1.21809 0.95575 0.98357 0.99219 1.21865 0.97756 0.98550 0.94096 0.90516 1.22871 0.91918 0.88490 1.02664 1.62621 1.02943 1.32561 1.26481 1.22165 0.97277 0.97079 0.90322 1.22170 0.84990 0.93433 0.99565 1.86441 1.18488 1.37791 1.94874 0.92267 0.88938 0.90129 0.90137 0.91958 0.91983 0.89733 0.91715 0.92002 0.92103 0.92361 0.89870 0.90393 0.94628 0.90143 0.93939 0.91842 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.14 -2.97 5.13 36.01 0.18 -2.79 16 11 C 0.57 11.27 6.83 -10.98 -0.08 11.19 16 12 O -0.53 -12.54 15.96 5.56 0.09 -12.46 16 13 N -0.61 -9.17 1.99 -169.07 -0.34 -9.51 16 14 C 0.11 1.39 5.80 -2.40 -0.01 1.37 16 15 C -0.09 -0.90 3.19 -89.08 -0.28 -1.18 16 16 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.09 -0.83 3.19 -88.99 -0.28 -1.12 16 18 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 19 C 0.12 1.38 6.05 -2.22 -0.01 1.36 16 20 C 0.09 0.92 2.26 -67.81 -0.15 0.76 16 21 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 22 C -0.15 -1.27 5.46 -26.66 -0.15 -1.42 16 23 C -0.11 -1.01 5.78 -25.76 -0.15 -1.16 16 24 C -0.10 -1.10 2.75 -89.59 -0.25 -1.34 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 26 C 0.07 0.89 4.06 -2.09 -0.01 0.88 16 27 N -0.52 -6.40 3.94 -224.09 -0.88 -7.28 16 28 C 0.06 0.69 4.85 -3.83 -0.02 0.68 16 29 C 0.08 0.99 7.31 37.15 0.27 1.27 16 30 O -0.57 -7.76 10.35 -35.23 -0.36 -8.13 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.09 1.89 7.96 -51.92 -0.41 1.47 16 33 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.08 1.15 7.13 -51.93 -0.37 0.78 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.04 7.04 -51.93 -0.37 0.68 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.55 6.77 -51.93 -0.35 0.20 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.43 5.10 -51.93 -0.26 1.17 16 43 H 0.08 1.14 5.46 -51.93 -0.28 0.85 16 44 H 0.04 0.41 6.96 -51.93 -0.36 0.04 16 45 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.38 4.19 9.12 45.56 0.42 4.61 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -34.19 371.81 -10.15 -44.35 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.02 Total: 4.79 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.74 Total: -4.36 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.49 Total: -42.29 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.28 Total: -20.58 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.19 -10.15 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656657979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.587 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds