Wall clock time and date at job start Tue Mar 31 2020 23:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99349 * 2 1 4 4 H 1.48499 * 109.47079 * 269.99390 * 3 2 1 5 5 H 1.48497 * 109.47371 * 30.00004 * 3 2 1 6 6 H 1.48502 * 109.46564 * 149.99799 * 3 2 1 7 7 C 1.38806 * 120.00605 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99617 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00341 * 180.02562 * 7 2 1 10 10 C 1.46508 * 120.00137 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47122 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47206 * 180.02562 * 11 10 9 13 13 C 1.38235 * 120.00151 * 90.00160 * 12 11 10 14 14 C 1.38238 * 119.99912 * 180.02562 * 13 12 11 15 15 C 1.38238 * 120.00156 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99965 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.46768 * 89.99740 * 16 15 14 18 18 C 1.34770 * 119.99810 * 179.97438 * 17 16 15 19 19 O 1.21594 * 120.00253 * 0.02562 * 18 17 16 20 20 C 1.47532 * 120.00092 * 180.02562 * 18 17 16 21 21 C 1.39709 * 120.19087 * 0.26227 * 20 18 17 22 22 C 1.37792 * 119.90977 * 180.25438 * 21 20 18 23 23 C 1.38552 * 120.29922 * 359.76184 * 22 21 20 24 24 C 1.38065 * 120.38821 * 359.97438 * 23 22 21 25 25 C 1.38702 * 120.08290 * 0.02562 * 24 23 22 26 26 O 1.35655 * 120.14742 * 179.97438 * 25 24 23 27 27 C 1.38232 * 119.99632 * 0.25218 * 15 14 13 28 28 C 1.38233 * 119.99998 * 269.97977 * 12 11 10 29 29 H 0.96994 * 120.00695 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00162 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46567 * 59.99708 * 10 9 7 32 32 H 1.08992 * 109.47176 * 299.99981 * 10 9 7 33 33 H 1.09003 * 109.47266 * 59.99550 * 11 10 9 34 34 H 1.09002 * 109.47206 * 300.00080 * 11 10 9 35 35 H 1.07994 * 119.99910 * 359.97438 * 13 12 11 36 36 H 1.08006 * 119.99717 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.47022 * 330.00387 * 16 15 14 38 38 H 1.08999 * 109.46989 * 209.99837 * 16 15 14 39 39 H 0.96997 * 120.00139 * 0.02562 * 17 16 15 40 40 H 1.08001 * 120.04881 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.85285 * 179.79026 * 22 21 20 42 42 H 1.07994 * 119.80867 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.95511 * 180.02562 * 24 23 22 44 44 H 0.96700 * 114.00230 * 90.00003 * 26 25 24 45 45 H 1.08000 * 119.99798 * 179.72711 * 27 15 14 46 46 H 1.07999 * 120.00210 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 6 5.6165 -2.1910 0.0000 12 6 6.3701 -3.4960 -0.0006 13 6 6.7157 -4.0941 -1.1981 14 6 7.4065 -5.2914 -1.1986 15 6 7.7522 -5.8905 -0.0017 16 6 8.5048 -7.1962 -0.0023 17 7 9.9454 -6.9294 -0.0030 18 6 10.8205 -7.9543 -0.0031 19 8 10.4144 -9.1004 -0.0031 20 6 12.2711 -7.6857 -0.0031 21 6 12.7421 -6.3704 0.0024 22 6 14.0982 -6.1261 -0.0030 23 6 14.9982 -7.1796 -0.0089 24 6 14.5463 -8.4842 -0.0090 25 6 13.1847 -8.7484 -0.0036 26 8 12.7393 -10.0297 -0.0042 27 6 7.4025 -5.2948 1.1957 28 6 6.7162 -4.0949 1.1962 29 1 -0.4851 0.8399 -0.0004 30 1 3.8647 -0.3619 0.0004 31 1 3.8493 -3.0420 -0.8902 32 1 3.8487 -3.0425 0.8897 33 1 5.8798 -1.6194 0.8899 34 1 5.8798 -1.6194 -0.8900 35 1 6.4452 -3.6262 -2.1331 36 1 7.6761 -5.7589 -2.1342 37 1 8.2408 -7.7673 -0.8923 38 1 8.2415 -7.7677 0.8877 39 1 10.2693 -6.0151 -0.0026 40 1 12.0443 -5.5461 0.0072 41 1 14.4612 -5.1090 -0.0021 42 1 16.0593 -6.9790 -0.0127 43 1 15.2540 -9.3000 -0.0132 44 1 12.6140 -10.4030 0.8790 45 1 7.6687 -5.7651 2.1308 46 1 6.4469 -3.6273 2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662801032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:26 Heat of formation + Delta-G solvation = -40.641125 kcal Electronic energy + Delta-G solvation = -26934.764307 eV Core-core repulsion = 22981.515542 eV Total energy + Delta-G solvation = -3953.248765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51061 -40.54182 -39.49351 -37.68895 -37.32490 -36.03435 -34.37287 -33.11419 -32.15939 -31.85316 -30.78604 -29.99590 -27.18100 -25.25079 -24.42245 -23.65176 -23.42471 -23.03775 -21.66671 -21.58794 -19.69968 -19.63779 -18.67836 -17.47979 -17.02429 -16.89469 -16.67879 -16.39474 -16.10359 -15.98878 -15.89776 -15.83326 -15.63408 -15.14032 -14.98790 -14.80373 -14.38608 -14.29604 -14.01213 -13.71656 -13.65416 -13.26088 -13.15281 -13.09498 -12.95283 -12.66548 -12.58898 -12.38002 -12.06262 -11.92471 -11.81149 -11.79532 -11.76716 -10.99073 -10.92290 -10.29009 -9.98860 -9.83087 -9.67010 -9.57499 -9.33053 -8.04208 -5.39297 -0.22979 0.24066 0.26579 0.49624 1.37924 1.42669 1.50165 1.83258 2.13625 2.48134 2.73059 2.85890 3.25370 3.26869 3.51555 3.63870 3.73038 3.85773 3.86659 4.10454 4.13590 4.16577 4.20419 4.35919 4.39393 4.42066 4.47624 4.55179 4.63724 4.72761 4.77111 4.77390 4.88336 5.05413 5.09133 5.21493 5.23318 5.23800 5.30413 5.32391 5.43987 5.46430 5.61114 5.73009 5.76235 5.78748 6.05876 6.19214 6.46501 6.78431 7.05945 7.14933 7.80544 8.01805 9.17232 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.001596 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.148597 B =17541.701657 C =18251.194588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.247 1.247 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.759 5.759 10 C 0.162 3.838 11 C -0.083 4.083 12 C -0.071 4.071 13 C -0.124 4.124 14 C -0.098 4.098 15 C -0.116 4.116 16 C 0.170 3.830 17 N -0.710 5.710 18 C 0.553 3.447 19 O -0.566 6.566 20 C -0.191 4.191 21 C -0.070 4.070 22 C -0.137 4.137 23 C -0.071 4.071 24 C -0.164 4.164 25 C 0.145 3.855 26 O -0.500 6.500 27 C -0.097 4.097 28 C -0.123 4.123 29 H 0.259 0.741 30 H 0.368 0.632 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.411 0.589 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.406 0.594 45 H 0.139 0.861 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.320 -13.977 1.817 39.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.405 5.405 10 C 0.036 3.964 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.117 4.117 15 C -0.116 4.116 16 C 0.047 3.953 17 N -0.363 5.363 18 C 0.342 3.658 19 O -0.446 6.446 20 C -0.195 4.195 21 C -0.089 4.089 22 C -0.155 4.155 23 C -0.089 4.089 24 C -0.182 4.182 25 C 0.099 3.901 26 O -0.313 6.313 27 C -0.115 4.115 28 C -0.141 4.141 29 H 0.068 0.932 30 H 0.202 0.798 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.166 0.834 44 H 0.265 0.735 45 H 0.157 0.843 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 36.811 -14.861 1.223 39.717 hybrid contribution -0.538 1.103 0.429 1.300 sum 36.273 -13.758 1.652 38.830 Atomic orbital electron populations 1.69900 1.07296 1.26879 1.59350 1.25601 0.96216 1.01607 1.02215 0.85322 0.78722 0.78937 0.78275 1.20186 1.22131 1.17162 1.19037 0.82835 0.93494 1.42008 0.93028 1.42700 1.02478 1.04224 1.91073 1.20698 0.90449 0.87265 0.97979 1.20704 0.92621 0.94886 1.03805 1.19896 0.97131 0.96175 0.93988 1.21233 0.98841 0.96140 0.97948 1.21202 0.97450 0.94880 0.98136 1.19755 1.01573 0.96580 0.93714 1.20073 0.78684 0.93644 1.02853 1.45917 1.05844 1.09713 1.74854 1.18450 0.86608 0.84708 0.76045 1.90792 1.80457 1.22361 1.50996 1.20427 0.92259 0.95506 1.11281 1.21528 0.97489 0.94324 0.95532 1.21531 0.92208 1.01278 1.00493 1.21681 1.01924 0.91219 0.94032 1.21702 0.93821 0.99260 1.03410 1.18849 0.91467 0.83711 0.96084 1.84706 1.87914 1.23886 1.34765 1.21201 0.97376 0.94808 0.98107 1.21241 0.98855 0.96117 0.97927 0.93232 0.79805 0.96176 0.96205 0.90080 0.90034 0.85217 0.84582 0.91145 0.90749 0.75120 0.83402 0.82224 0.82091 0.83357 0.73458 0.84334 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 44.99 27.74 68.60 1.90 46.89 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 7 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.76 -35.64 5.41 -343.45 -1.86 -37.50 16 10 C 0.16 6.17 6.24 86.38 0.54 6.70 16 11 C -0.08 -2.27 5.46 29.84 0.16 -2.11 16 12 C -0.07 -1.68 5.13 -19.87 -0.10 -1.78 16 13 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 14 C -0.10 -1.80 9.70 22.27 0.22 -1.59 16 15 C -0.12 -2.02 5.25 -19.87 -0.10 -2.12 16 16 C 0.17 2.94 5.80 85.63 0.50 3.43 16 17 N -0.71 -11.11 5.50 -470.01 -2.58 -13.70 16 18 C 0.55 11.48 7.76 86.70 0.67 12.15 16 19 O -0.57 -16.11 15.16 16.91 0.26 -15.85 16 20 C -0.19 -3.15 5.89 -20.01 -0.12 -3.26 16 21 C -0.07 -0.70 9.54 22.52 0.21 -0.48 16 22 C -0.14 -0.90 10.02 22.24 0.22 -0.68 16 23 C -0.07 -0.46 10.03 22.30 0.22 -0.24 16 24 C -0.16 -1.75 9.98 22.34 0.22 -1.53 16 25 C 0.15 2.41 6.72 22.84 0.15 2.57 16 26 O -0.50 -9.58 11.58 -68.78 -0.80 -10.38 16 27 C -0.10 -1.72 9.70 22.27 0.22 -1.51 16 28 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 29 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.37 16.07 5.53 -92.71 -0.51 15.56 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 34 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 38 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 39 H 0.41 4.46 6.49 -92.71 -0.60 3.86 16 40 H 0.15 0.80 6.40 -2.91 -0.02 0.78 16 41 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 42 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.41 4.82 9.06 -74.06 -0.67 4.15 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -80.20 391.56 1.20 -78.99 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.82 Total: 26.80 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.80 Total: -11.92 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.14 Total: -114.53 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.54 Total: -26.23 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -80.20 1.20 -78.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662801032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.351 kcal (2) G-P(sol) polarization free energy of solvation -80.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds