Wall clock time and date at job start Tue Mar 31 2020 23:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48508 * 109.47007 * 270.00257 * 3 2 1 5 5 H 1.48503 * 109.47390 * 29.99769 * 3 2 1 6 6 H 1.48501 * 109.47476 * 150.00284 * 3 2 1 7 7 C 1.38806 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99751 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99961 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.38231 * 120.00140 * 90.00122 * 11 10 9 13 13 C 1.38238 * 119.99928 * 180.02562 * 12 11 10 14 14 C 1.38232 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00150 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47512 * 89.99557 * 15 14 13 17 17 C 1.34770 * 120.00122 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00256 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00010 * 180.02562 * 17 16 15 20 20 O 1.42902 * 109.47357 * 180.02562 * 19 17 16 21 21 C 1.35898 * 116.99694 * 180.02562 * 20 19 17 22 22 C 1.38735 * 120.05254 * 179.97438 * 21 20 19 23 23 C 1.38144 * 119.94607 * 179.97438 * 22 21 20 24 24 C 1.38266 * 120.05233 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.11595 * 359.95530 * 24 23 22 26 26 C 1.38142 * 120.04935 * 0.04230 * 25 24 23 27 27 C 1.38234 * 120.00400 * 0.24896 * 14 13 12 28 28 C 1.38235 * 119.99679 * 359.49187 * 27 14 13 29 29 H 0.97003 * 120.00255 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00365 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46951 * 60.00143 * 10 9 7 32 32 H 1.09000 * 109.47341 * 300.00544 * 10 9 7 33 33 H 1.07999 * 120.00103 * 0.02562 * 12 11 10 34 34 H 1.08002 * 120.00131 * 179.97438 * 13 12 11 35 35 H 1.09008 * 109.46893 * 330.00126 * 15 14 13 36 36 H 1.09001 * 109.47747 * 210.00097 * 15 14 13 37 37 H 0.96998 * 119.99602 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.46805 * 59.99992 * 19 17 16 39 39 H 1.08998 * 109.47364 * 300.00344 * 19 17 16 40 40 H 1.08002 * 120.02704 * 359.70561 * 22 21 20 41 41 H 1.08001 * 119.97447 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.94089 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.97577 * 180.02562 * 25 24 23 44 44 H 1.08005 * 120.02748 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00246 * 179.72942 * 27 14 13 46 46 H 1.08000 * 120.00029 * 180.23036 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0788 -4.8021 -0.0021 12 6 0.6292 -5.3267 -1.1993 13 6 -0.2695 -6.3771 -1.1996 14 6 -0.7190 -6.9024 -0.0027 15 6 -1.6992 -8.0471 -0.0030 16 7 -0.9678 -9.3165 -0.0035 17 6 -1.6426 -10.4830 -0.0044 18 8 -2.8554 -10.4821 -0.0051 19 6 -0.8901 -11.7888 -0.0044 20 8 -1.8196 -12.8742 -0.0059 21 6 -1.3011 -14.1304 -0.0056 22 6 -2.1460 -15.2308 -0.0065 23 6 -1.6166 -16.5068 -0.0067 24 6 -0.2458 -16.6876 -0.0054 25 6 0.5985 -15.5926 -0.0049 26 6 0.0739 -14.3147 -0.0048 27 6 -0.2738 -6.3742 1.1947 28 6 0.6290 -5.3274 1.1950 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.6854 -3.7148 0.8878 32 1 2.6841 -3.7141 -0.8921 33 1 0.9800 -4.9159 -2.1345 34 1 -0.6212 -6.7867 -2.1351 35 1 -2.3259 -7.9886 -0.8930 36 1 -2.3258 -7.9892 0.8871 37 1 0.0022 -9.3172 -0.0033 38 1 -0.2641 -11.8473 0.8860 39 1 -0.2629 -11.8468 -0.8939 40 1 -3.2168 -15.0900 -0.0027 41 1 -2.2739 -17.3637 -0.0070 42 1 0.1662 -17.6860 -0.0052 43 1 1.6687 -15.7365 -0.0043 44 1 0.7337 -13.4596 -0.0039 45 1 -0.6283 -6.7818 2.1298 46 1 0.9797 -4.9171 2.1305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666347215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:38 Heat of formation + Delta-G solvation = -8.942394 kcal Electronic energy + Delta-G solvation = -26516.410878 eV Core-core repulsion = 22564.536674 eV Total energy + Delta-G solvation = -3951.874205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81245 -39.87688 -39.10106 -37.62896 -35.60804 -34.40700 -32.27142 -31.56219 -30.79956 -30.78036 -30.22917 -28.76666 -26.69686 -24.39810 -23.17407 -22.65173 -22.55242 -22.31235 -20.90335 -20.49417 -18.85422 -17.82643 -17.31140 -16.84450 -16.69070 -16.13736 -15.97453 -15.60176 -15.35712 -14.89916 -14.70182 -14.68701 -14.58109 -14.05426 -13.84485 -13.41978 -13.31125 -13.23637 -13.22615 -13.06762 -12.72264 -12.39760 -12.10903 -12.04663 -11.90586 -11.56497 -11.36107 -11.11667 -10.90163 -10.78234 -10.64344 -10.23809 -10.09859 -9.81173 -9.46504 -9.42416 -8.94141 -8.75144 -8.67015 -8.50810 -6.98549 -5.80185 -3.10448 0.87924 0.99254 1.29418 1.57971 2.21231 2.24168 3.30011 3.34177 3.41077 3.46066 3.48050 3.92797 4.19559 4.37272 4.44913 4.50529 4.53883 4.58048 4.61528 4.69657 4.89268 4.92989 5.01417 5.12860 5.17956 5.26507 5.32177 5.51534 5.53019 5.54998 5.68290 5.79069 5.83084 5.94641 6.01807 6.08807 6.09724 6.11078 6.15082 6.28515 6.43205 6.53345 6.56802 6.62815 6.88464 7.04518 7.11684 7.16393 7.65160 7.82064 8.37335 9.49043 10.04552 10.40212 11.42188 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035529 B = 0.001411 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.895024 B =19840.734421 C =20313.530743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.726 5.726 10 C 0.184 3.816 11 C -0.062 4.062 12 C -0.106 4.106 13 C -0.103 4.103 14 C -0.127 4.127 15 C 0.168 3.832 16 N -0.720 5.720 17 C 0.514 3.486 18 O -0.517 6.517 19 C 0.041 3.959 20 O -0.289 6.289 21 C 0.129 3.871 22 C -0.149 4.149 23 C -0.080 4.080 24 C -0.160 4.160 25 C -0.080 4.080 26 C -0.212 4.212 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -32.911 0.017 32.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.063 4.063 12 C -0.125 4.125 13 C -0.121 4.121 14 C -0.127 4.127 15 C 0.046 3.954 16 N -0.374 5.374 17 C 0.298 3.702 18 O -0.392 6.392 19 C -0.038 4.038 20 O -0.202 6.202 21 C 0.084 3.916 22 C -0.168 4.168 23 C -0.098 4.098 24 C -0.178 4.178 25 C -0.098 4.098 26 C -0.230 4.230 27 C -0.121 4.121 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.287 -32.705 0.026 32.706 hybrid contribution 0.899 1.131 -0.011 1.444 sum 0.612 -31.574 0.014 31.580 Atomic orbital electron populations 1.69673 1.05148 1.25763 1.57308 1.24760 0.95528 0.97726 1.02747 0.86173 0.78638 0.83694 0.77556 1.21650 1.21708 1.20704 1.19236 0.91067 0.83948 1.43282 0.91053 1.42331 1.05941 0.99269 1.89558 1.19712 0.91875 0.83961 0.98772 1.20412 0.97102 0.96007 0.92794 1.21133 0.97256 0.95842 0.98261 1.20999 0.97319 0.96740 0.97073 1.19643 1.00493 0.98712 0.93891 1.20195 0.92614 0.79348 1.03261 1.45973 1.10673 1.05034 1.75680 1.19998 0.88248 0.84688 0.77256 1.90775 1.13539 1.87220 1.47631 1.22478 0.92064 0.85194 1.04019 1.86164 1.33999 1.11497 1.88507 1.19086 0.92073 0.84281 0.96187 1.20502 1.00126 0.90265 1.05875 1.21006 0.95372 0.96145 0.97297 1.21106 0.93584 0.99001 1.04118 1.20974 0.99949 0.91823 0.97048 1.21291 0.93720 0.98899 1.09119 1.20999 0.97291 0.96763 0.97070 1.21137 0.97212 0.95881 0.98265 0.93423 0.78046 0.95372 0.95384 0.85754 0.86267 0.90453 0.90452 0.76185 0.88807 0.88813 0.84946 0.85232 0.85842 0.85659 0.85370 0.86265 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.30 5.59 -61.09 -0.34 -18.64 16 10 C 0.18 3.63 6.38 -5.20 -0.03 3.59 16 11 C -0.06 -1.03 5.25 -104.62 -0.55 -1.58 16 12 C -0.11 -1.56 9.70 -39.58 -0.38 -1.95 16 13 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 14 C -0.13 -1.45 5.25 -104.63 -0.55 -2.00 16 15 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 16 N -0.72 -6.04 5.55 -61.47 -0.34 -6.38 16 17 C 0.51 5.26 7.91 -10.99 -0.09 5.17 16 18 O -0.52 -7.75 16.50 -14.35 -0.24 -7.99 16 19 C 0.04 0.30 5.22 36.01 0.19 0.49 16 20 O -0.29 -3.04 9.67 -39.33 -0.38 -3.42 16 21 C 0.13 1.16 6.69 -39.22 -0.26 0.90 16 22 C -0.15 -1.23 9.99 -39.43 -0.39 -1.63 16 23 C -0.08 -0.52 10.04 -39.61 -0.40 -0.92 16 24 C -0.16 -0.96 10.04 -39.56 -0.40 -1.36 16 25 C -0.08 -0.49 10.04 -39.61 -0.40 -0.89 16 26 C -0.21 -1.48 9.04 -39.44 -0.36 -1.84 16 27 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 28 C -0.11 -1.56 9.70 -39.58 -0.38 -1.95 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.39 10.40 7.66 -40.82 -0.31 10.08 16 31 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.08 0.83 8.09 -51.92 -0.42 0.41 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.40 2.39 8.46 -40.82 -0.35 2.05 16 38 H 0.09 0.45 7.66 -51.93 -0.40 0.06 16 39 H 0.09 0.45 7.66 -51.93 -0.40 0.06 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.62 6.30 -52.48 -0.33 0.28 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -34.72 397.87 -11.04 -45.77 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.39 Total: 7.81 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -5.05 Total: -12.91 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.04 Total: -52.42 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.62 Total: -11.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.72 -11.04 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666347215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.825 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds