Wall clock time and date at job start Tue Mar 31 2020 23:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48498 * 109.46899 * 269.99990 * 3 2 1 5 5 H 1.48497 * 109.47160 * 29.99942 * 3 2 1 6 6 H 1.48504 * 109.47007 * 149.99949 * 3 2 1 7 7 C 1.38797 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99940 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47066 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00358 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47357 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.42212 * 291.65203 * 15 14 13 17 17 C 1.54856 * 109.45159 * 171.72159 * 15 14 13 18 18 C 1.47095 * 110.32191 * 168.69494 * 17 15 14 19 19 C 1.52566 * 114.32732 * 62.79899 * 18 17 15 20 20 C 1.50890 * 109.35251 * 274.98243 * 19 18 17 21 21 C 1.53949 * 110.09007 * 91.89038 * 20 19 18 22 22 N 1.44579 * 109.44913 * 51.57827 * 15 14 13 23 23 C 1.34776 * 118.64238 * 30.77291 * 22 15 14 24 24 O 1.21275 * 120.00122 * 356.07138 * 23 22 15 25 25 C 1.50709 * 119.99843 * 176.06666 * 23 22 15 26 26 C 1.52994 * 117.49981 * 248.62221 * 25 23 22 27 27 C 1.52991 * 117.49649 * 180.02562 * 25 23 22 28 28 H 0.96998 * 120.00383 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46946 * 60.00233 * 10 9 7 30 30 H 1.08997 * 109.47023 * 300.00267 * 10 9 7 31 31 H 0.96998 * 119.99660 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46985 * 59.99554 * 14 13 11 33 33 H 1.09009 * 109.46898 * 300.00063 * 14 13 11 34 34 H 1.08996 * 109.33305 * 48.43027 * 17 15 14 35 35 H 1.09000 * 109.32710 * 288.95476 * 17 15 14 36 36 H 1.09000 * 108.50969 * 184.05309 * 18 17 15 37 37 H 1.08998 * 108.51065 * 301.54074 * 18 17 15 38 38 H 1.09000 * 109.49048 * 34.94599 * 19 18 17 39 39 H 1.08992 * 109.49389 * 154.99494 * 19 18 17 40 40 H 1.08998 * 109.36595 * 212.08000 * 20 19 18 41 41 H 1.08996 * 109.36633 * 331.70329 * 20 19 18 42 42 H 1.09002 * 108.94683 * 80.12502 * 21 20 19 43 43 H 1.08999 * 108.94574 * 198.74751 * 21 20 19 44 44 H 1.08999 * 115.54610 * 34.33334 * 25 23 22 45 45 H 1.09005 * 117.50145 * 0.02562 * 26 25 23 46 46 H 1.09001 * 117.49670 * 145.01932 * 26 25 23 47 47 H 1.09006 * 117.49828 * 214.98046 * 27 25 23 48 48 H 1.09008 * 117.50264 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8914 0.0013 11 6 1.9877 -5.3026 0.0030 12 8 0.7914 -5.5023 0.0040 13 7 2.8444 -6.3430 0.0024 14 6 2.3308 -7.7150 0.0035 15 6 3.5029 -8.6984 0.0031 16 1 4.0237 -8.6413 -0.9528 17 6 2.9693 -10.1367 0.2145 18 6 4.0316 -11.1195 -0.0489 19 6 5.2284 -11.0187 0.8919 20 6 6.1894 -9.9795 0.3689 21 6 5.8696 -8.6056 0.9855 22 7 4.4170 -8.3583 1.0704 23 6 3.9222 -7.7922 2.1889 24 8 2.7441 -7.5127 2.2570 25 6 4.8330 -7.5065 3.3552 26 6 4.6329 -8.3332 4.6269 27 6 4.2110 -6.8634 4.5962 28 1 -0.4850 0.8400 0.0004 29 1 3.1253 -3.7308 0.8909 30 1 3.1240 -3.7316 -0.8891 31 1 3.8012 -6.1834 0.0013 32 1 1.7211 -7.8754 -0.8857 33 1 1.7232 -7.8748 0.8943 34 1 2.1357 -10.3158 -0.4646 35 1 2.6236 -10.2458 1.2424 36 1 3.6068 -12.1196 0.0374 37 1 4.3829 -10.9836 -1.0717 38 1 4.8864 -10.7302 1.8859 39 1 5.7308 -11.9844 0.9462 40 1 7.2082 -10.2650 0.6308 41 1 6.1005 -9.9184 -0.7157 42 1 6.2956 -8.5597 1.9878 43 1 6.3258 -7.8280 0.3730 44 1 5.8521 -7.2193 3.0963 45 1 3.8427 -9.0841 4.6200 46 1 5.5205 -8.5902 5.2049 47 1 4.8210 -6.1530 5.1542 48 1 3.1429 -6.6473 4.5694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678567618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:47 Heat of formation + Delta-G solvation = -30.100245 kcal Electronic energy + Delta-G solvation = -28497.196754 eV Core-core repulsion = 24679.849027 eV Total energy + Delta-G solvation = -3817.347727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23437 -38.69467 -38.20291 -36.42439 -34.55488 -34.18324 -32.62380 -32.35813 -29.67175 -27.98385 -26.35609 -25.42951 -24.79796 -23.19478 -22.65647 -21.57274 -20.97360 -20.01234 -18.78648 -17.96208 -17.40605 -16.79028 -16.13920 -15.76856 -15.68913 -15.20756 -15.12557 -14.77833 -14.74162 -14.57100 -14.18501 -13.86277 -13.73948 -13.22218 -13.11337 -12.86140 -12.76610 -12.60274 -12.52655 -12.29621 -11.77215 -11.64259 -11.60087 -11.37284 -11.07490 -11.04123 -11.01508 -10.95489 -10.86198 -10.76317 -10.69040 -10.65594 -9.73863 -9.43983 -9.17345 -9.00287 -8.87293 -8.32739 -8.12632 -6.40240 -6.14716 -3.83947 2.35331 2.65186 3.17865 3.25998 3.32379 3.38020 3.41074 3.64450 3.88790 4.10981 4.22756 4.27239 4.43097 4.53497 4.54927 4.64524 4.65522 4.70208 4.75680 4.88864 5.04037 5.11214 5.19856 5.23180 5.29393 5.32100 5.35196 5.42576 5.49032 5.55186 5.68793 5.70878 5.72583 5.73131 5.76940 5.84331 5.88432 5.97555 5.99746 6.02486 6.21191 6.25143 6.55481 6.92245 7.14502 7.65750 7.96108 8.15010 8.41882 8.89586 9.30139 10.92729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002756 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.769118 B =10155.852590 C =10792.570665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.519 6.519 13 N -0.726 5.726 14 C 0.105 3.895 15 C 0.143 3.857 16 H 0.083 0.917 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.132 4.132 21 C 0.106 3.894 22 N -0.605 5.605 23 C 0.538 3.462 24 O -0.505 6.505 25 C -0.198 4.198 26 C -0.153 4.153 27 C -0.145 4.145 28 H 0.268 0.732 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.389 0.611 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.551 -24.988 4.001 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.089 0.911 9 S 0.168 5.832 10 C -0.301 4.301 11 C 0.321 3.679 12 O -0.394 6.394 13 N -0.380 5.380 14 C -0.019 4.019 15 C 0.038 3.962 16 H 0.101 0.899 17 C -0.165 4.165 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.170 4.170 21 C -0.016 4.016 22 N -0.339 5.339 23 C 0.326 3.674 24 O -0.380 6.380 25 C -0.220 4.220 26 C -0.190 4.190 27 C -0.183 4.183 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.222 0.778 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.733 -25.076 4.007 29.358 hybrid contribution 2.764 1.306 -0.180 3.062 sum 17.497 -23.770 3.827 29.762 Atomic orbital electron populations 1.70026 1.05925 1.27329 1.47055 1.24988 0.95012 0.98955 0.94684 0.86183 0.79409 0.81697 0.78280 1.20327 1.20773 1.19746 1.22878 0.94872 0.91832 1.58639 0.91084 1.85399 1.05102 0.96089 1.96642 1.23497 1.06304 0.95922 1.04376 1.20092 0.86527 0.85992 0.75291 1.90675 1.15379 1.85545 1.47776 1.45723 1.09137 1.05526 1.77577 1.22003 0.95654 0.80207 1.04037 1.21356 0.90395 0.94302 0.90113 0.89856 1.21147 0.98531 0.93626 1.03194 1.20448 0.96053 0.99319 0.99662 1.21058 0.95888 0.98531 0.99846 1.21778 0.99874 0.94285 1.01080 1.22039 0.79906 0.97190 1.02463 1.47642 1.07560 1.62099 1.16608 1.19795 0.88136 0.76683 0.82798 1.90720 1.16352 1.50648 1.80254 1.22291 1.00791 1.09319 0.89556 1.22886 1.03594 0.95437 0.97114 1.22971 1.03046 0.95122 0.97138 0.92256 0.89688 0.89736 0.77837 0.92508 0.86733 0.90425 0.91346 0.92237 0.92188 0.91552 0.91942 0.90622 0.91360 0.89568 0.91683 0.86085 0.88459 0.88044 0.87930 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.94 13.22 55.49 0.73 -26.20 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -15.79 9.50 30.94 0.29 -15.49 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.33 6.16 36.00 0.22 -3.11 16 11 C 0.54 11.31 7.85 -10.99 -0.09 11.22 16 12 O -0.52 -13.16 15.86 5.56 0.09 -13.07 16 13 N -0.73 -11.47 4.05 -60.30 -0.24 -11.72 16 14 C 0.10 1.47 4.30 -4.04 -0.02 1.45 16 15 C 0.14 1.34 2.20 -67.98 -0.15 1.19 16 16 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 17 C -0.13 -1.02 5.05 -28.59 -0.14 -1.17 16 18 C -0.12 -0.72 5.15 -29.79 -0.15 -0.87 16 19 C -0.12 -0.62 5.51 -28.01 -0.15 -0.78 16 20 C -0.13 -0.59 5.71 -27.30 -0.16 -0.74 16 21 C 0.11 0.59 5.90 -2.95 -0.02 0.57 16 22 N -0.60 -5.17 1.68 -164.92 -0.28 -5.45 16 23 C 0.54 6.06 6.50 -10.98 -0.07 5.99 16 24 O -0.51 -7.94 11.77 5.56 0.07 -7.88 16 25 C -0.20 -1.75 4.86 -91.77 -0.45 -2.19 16 26 C -0.15 -1.15 10.23 -26.76 -0.27 -1.43 16 27 C -0.15 -1.41 10.04 -26.76 -0.27 -1.68 16 28 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.08 1.78 8.14 -51.91 -0.42 1.36 16 30 H 0.08 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.39 5.18 7.84 -40.82 -0.32 4.86 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.95 5.54 -52.91 -0.29 1.66 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.34 7.36 -51.93 -0.38 -0.04 16 38 H 0.07 0.44 7.48 -51.93 -0.39 0.05 16 39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.31 7.32 -51.93 -0.38 -0.07 16 42 H 0.09 0.39 5.62 -51.93 -0.29 0.10 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.12 0.80 6.74 -51.93 -0.35 0.45 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.11 1.37 7.67 -51.92 -0.40 0.97 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -37.16 389.90 -10.35 -47.51 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.84 Total: 2.91 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.52 Total: -5.00 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.21 Total: -43.37 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.15 Total: -20.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.16 -10.35 -47.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678567618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.411 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds