Wall clock time and date at job start Tue Mar 31 2020 23:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86807 * 119.99618 * 2 1 4 4 H 1.48498 * 109.46899 * 269.99990 * 3 2 1 5 5 H 1.48497 * 109.47160 * 29.99942 * 3 2 1 6 6 H 1.48504 * 109.47007 * 149.99949 * 3 2 1 7 7 C 1.38797 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99940 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47066 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00358 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47357 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.42212 * 291.65203 * 15 14 13 17 17 C 1.54856 * 109.45159 * 171.72159 * 15 14 13 18 18 C 1.47095 * 110.32191 * 168.69494 * 17 15 14 19 19 C 1.52566 * 114.32732 * 62.79899 * 18 17 15 20 20 C 1.50890 * 109.35251 * 274.98243 * 19 18 17 21 21 C 1.53949 * 110.09007 * 91.89038 * 20 19 18 22 22 N 1.44579 * 109.44913 * 51.57827 * 15 14 13 23 23 C 1.34776 * 118.64238 * 30.77291 * 22 15 14 24 24 O 1.21275 * 120.00122 * 356.07138 * 23 22 15 25 25 C 1.50709 * 119.99843 * 176.06666 * 23 22 15 26 26 C 1.52994 * 117.49981 * 248.62221 * 25 23 22 27 27 C 1.52991 * 117.49649 * 180.02562 * 25 23 22 28 28 H 0.96998 * 120.00383 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46946 * 60.00233 * 10 9 7 30 30 H 1.08997 * 109.47023 * 300.00267 * 10 9 7 31 31 H 0.96998 * 119.99660 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46985 * 59.99554 * 14 13 11 33 33 H 1.09009 * 109.46898 * 300.00063 * 14 13 11 34 34 H 1.08996 * 109.33305 * 48.43027 * 17 15 14 35 35 H 1.09000 * 109.32710 * 288.95476 * 17 15 14 36 36 H 1.09000 * 108.50969 * 184.05309 * 18 17 15 37 37 H 1.08998 * 108.51065 * 301.54074 * 18 17 15 38 38 H 1.09000 * 109.49048 * 34.94599 * 19 18 17 39 39 H 1.08992 * 109.49389 * 154.99494 * 19 18 17 40 40 H 1.08998 * 109.36595 * 212.08000 * 20 19 18 41 41 H 1.08996 * 109.36633 * 331.70329 * 20 19 18 42 42 H 1.09002 * 108.94683 * 80.12502 * 21 20 19 43 43 H 1.08999 * 108.94574 * 198.74751 * 21 20 19 44 44 H 1.08999 * 115.54610 * 34.33334 * 25 23 22 45 45 H 1.09005 * 117.50145 * 0.02562 * 26 25 23 46 46 H 1.09001 * 117.49670 * 145.01932 * 26 25 23 47 47 H 1.09006 * 117.49828 * 214.98046 * 27 25 23 48 48 H 1.09008 * 117.50264 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8914 0.0013 11 6 1.9877 -5.3026 0.0030 12 8 0.7914 -5.5023 0.0040 13 7 2.8444 -6.3430 0.0024 14 6 2.3308 -7.7150 0.0035 15 6 3.5029 -8.6984 0.0031 16 1 4.0237 -8.6413 -0.9528 17 6 2.9693 -10.1367 0.2145 18 6 4.0316 -11.1195 -0.0489 19 6 5.2284 -11.0187 0.8919 20 6 6.1894 -9.9795 0.3689 21 6 5.8696 -8.6056 0.9855 22 7 4.4170 -8.3583 1.0704 23 6 3.9222 -7.7922 2.1889 24 8 2.7441 -7.5127 2.2570 25 6 4.8330 -7.5065 3.3552 26 6 4.6329 -8.3332 4.6269 27 6 4.2110 -6.8634 4.5962 28 1 -0.4850 0.8400 0.0004 29 1 3.1253 -3.7308 0.8909 30 1 3.1240 -3.7316 -0.8891 31 1 3.8012 -6.1834 0.0013 32 1 1.7211 -7.8754 -0.8857 33 1 1.7232 -7.8748 0.8943 34 1 2.1357 -10.3158 -0.4646 35 1 2.6236 -10.2458 1.2424 36 1 3.6068 -12.1196 0.0374 37 1 4.3829 -10.9836 -1.0717 38 1 4.8864 -10.7302 1.8859 39 1 5.7308 -11.9844 0.9462 40 1 7.2082 -10.2650 0.6308 41 1 6.1005 -9.9184 -0.7157 42 1 6.2956 -8.5597 1.9878 43 1 6.3258 -7.8280 0.3730 44 1 5.8521 -7.2193 3.0963 45 1 3.8427 -9.0841 4.6200 46 1 5.5205 -8.5902 5.2049 47 1 4.8210 -6.1530 5.1542 48 1 3.1429 -6.6473 4.5694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678567618.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:46 Heat of formation + Delta-G solvation = -54.167159 kcal Electronic energy + Delta-G solvation = -28498.240373 eV Core-core repulsion = 24679.849027 eV Total energy + Delta-G solvation = -3818.391346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.09212 -40.28328 -38.91362 -37.23688 -35.73766 -34.86109 -34.59838 -33.59679 -31.17759 -29.00740 -27.69567 -26.96097 -25.69911 -23.98286 -23.33544 -22.33504 -21.88639 -21.17661 -19.95704 -19.49138 -18.48029 -17.68387 -17.62924 -16.91150 -16.86184 -16.54839 -16.45372 -16.03173 -15.76179 -15.55572 -15.32398 -14.90478 -14.72381 -14.62564 -14.38366 -13.99110 -13.73252 -13.65729 -13.40340 -13.24887 -13.18222 -13.03201 -12.88990 -12.61377 -12.46349 -12.35194 -11.91060 -11.75386 -11.61514 -11.53082 -11.48704 -11.36585 -11.26518 -11.15336 -10.91150 -10.57252 -10.29752 -9.71959 -9.54646 -8.69153 -8.35337 -6.14599 1.25212 1.42050 1.45593 1.52245 1.56724 1.67290 1.93985 2.26120 2.35555 2.93511 2.98274 3.31361 3.37535 3.74745 3.81716 3.84498 3.87565 3.97309 4.02983 4.08028 4.15940 4.17696 4.23692 4.28788 4.34425 4.42371 4.63405 4.66257 4.71288 4.72563 4.78406 4.89479 4.99258 5.01031 5.04496 5.09648 5.21632 5.26888 5.28868 5.31668 5.37655 5.39652 5.46140 5.52410 5.78740 6.18555 6.39413 6.51223 7.04873 7.29583 7.31284 8.74248 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002756 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.769118 B =10155.852590 C =10792.570665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.003 2.997 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.152 6.152 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.571 6.571 13 N -0.697 5.697 14 C 0.105 3.895 15 C 0.151 3.849 16 H 0.108 0.892 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.127 4.127 21 C 0.099 3.901 22 N -0.596 5.596 23 C 0.528 3.472 24 O -0.561 6.561 25 C -0.196 4.196 26 C -0.130 4.130 27 C -0.169 4.169 28 H 0.272 0.728 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.153 0.847 45 H 0.084 0.916 46 H 0.135 0.865 47 H 0.119 0.881 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.314 -25.720 3.607 34.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.824 3.176 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.075 5.925 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.450 6.450 13 N -0.349 5.349 14 C -0.018 4.018 15 C 0.047 3.953 16 H 0.126 0.874 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.165 4.165 21 C -0.022 4.022 22 N -0.329 5.329 23 C 0.318 3.682 24 O -0.440 6.440 25 C -0.217 4.217 26 C -0.167 4.167 27 C -0.206 4.206 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.171 0.829 45 H 0.102 0.898 46 H 0.153 0.847 47 H 0.137 0.863 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.589 -25.867 3.598 32.647 hybrid contribution 1.284 1.378 -0.040 1.885 sum 20.874 -24.489 3.558 32.374 Atomic orbital electron populations 1.70199 1.08079 1.28665 1.47952 1.26196 0.96014 1.03461 0.93643 0.84902 0.78149 0.75681 0.78897 1.19093 1.20200 1.18098 1.23193 0.95300 0.91879 1.59026 0.89962 1.85630 1.10570 0.99249 1.97008 1.23307 1.03462 0.94642 1.06077 1.19993 0.86261 0.86627 0.75236 1.90657 1.17573 1.86126 1.50609 1.45442 1.09324 1.05233 1.74944 1.22041 0.97666 0.79971 1.02171 1.21278 0.89111 0.93381 0.91534 0.87422 1.21091 0.99420 0.93394 1.01853 1.20436 0.95751 0.98539 1.00606 1.21050 0.95728 0.99630 0.98781 1.21772 1.00613 0.92954 1.01138 1.22364 0.77332 0.98520 1.03993 1.47737 1.08997 1.60836 1.15324 1.20335 0.87765 0.76224 0.83915 1.90732 1.18757 1.53184 1.81372 1.22396 1.01331 1.09402 0.88537 1.22945 1.04127 0.93473 0.96166 1.22919 1.01177 0.97440 0.99074 0.91951 0.88265 0.87335 0.75956 0.93212 0.89822 0.90562 0.93532 0.91919 0.90972 0.92978 0.90752 0.88501 0.90945 0.88062 0.90191 0.82917 0.89789 0.84703 0.86264 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.94 13.22 21.65 0.29 -57.66 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 44.72 29.55 68.60 2.03 46.74 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.55 -32.55 9.50 67.95 0.65 -31.90 16 8 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 9 S -0.15 -9.03 20.57 -56.49 -1.16 -10.19 16 10 C -0.12 -5.50 6.16 71.23 0.44 -5.06 16 11 C 0.53 23.12 7.85 87.66 0.69 23.81 16 12 O -0.57 -30.55 15.86 -3.03 -0.05 -30.60 16 13 N -0.70 -22.00 4.05 -463.07 -1.88 -23.87 16 14 C 0.11 3.03 4.30 86.38 0.37 3.40 16 15 C 0.15 2.66 2.20 45.98 0.10 2.76 16 16 H 0.11 1.44 8.07 -2.38 -0.02 1.42 16 17 C -0.12 -1.86 5.05 29.39 0.15 -1.71 16 18 C -0.12 -1.16 5.15 28.61 0.15 -1.01 16 19 C -0.11 -0.88 5.51 29.76 0.16 -0.72 16 20 C -0.13 -0.58 5.71 30.23 0.17 -0.41 16 21 C 0.10 0.69 5.90 86.49 0.51 1.21 16 22 N -0.60 -9.08 1.68 -794.06 -1.34 -10.41 16 23 C 0.53 11.67 6.50 87.66 0.57 12.24 16 24 O -0.56 -18.69 11.77 -3.02 -0.04 -18.72 16 25 C -0.20 -3.11 4.86 -11.54 -0.06 -3.17 16 26 C -0.13 -1.75 10.23 30.57 0.31 -1.44 16 27 C -0.17 -3.26 10.04 30.57 0.31 -2.96 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 30 H 0.11 4.29 8.14 -2.40 -0.02 4.27 16 31 H 0.40 10.11 7.84 -92.71 -0.73 9.39 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 3.08 5.54 -18.02 -0.10 2.98 16 34 H 0.08 1.20 8.11 -2.39 -0.02 1.18 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.59 7.36 -2.39 -0.02 0.57 16 38 H 0.05 0.57 7.48 -2.39 -0.02 0.56 16 39 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.07 0.33 7.32 -2.39 -0.02 0.31 16 42 H 0.10 0.45 5.62 -2.39 -0.01 0.44 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.15 1.42 6.74 -2.39 -0.02 1.41 16 45 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.13 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.07 1.95 7.67 -2.38 -0.02 1.93 16 Total: -1.00 -87.20 389.90 2.99 -84.21 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.15 Total: 24.33 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 4.99 Total: -3.83 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -2.93 Total: -91.94 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.08 Total: -49.32 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.16 Total: -10.19 kcal Total: -87.20 2.99 -84.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678567618.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.044 kcal (2) G-P(sol) polarization free energy of solvation -87.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds