Wall clock time and date at job start Wed Apr 1 2020 00:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48500 * 109.46850 * 269.99773 * 3 2 1 5 5 H 1.48496 * 109.46862 * 29.99896 * 3 2 1 6 6 H 1.48500 * 109.47171 * 150.00197 * 3 2 1 7 7 C 1.38800 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.80990 * 100.00165 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47221 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99693 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64034 * 328.13352 * 14 13 11 16 16 C 1.55149 * 110.72085 * 91.47549 * 14 13 11 17 17 C 1.54913 * 101.58081 * 153.86559 * 16 14 13 18 18 N 1.47422 * 104.83234 * 322.98715 * 17 16 14 19 19 C 1.34770 * 125.64787 * 204.16584 * 18 17 16 20 20 O 1.21285 * 119.99823 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.00308 * 359.95740 * 19 18 17 22 22 C 1.52998 * 109.47378 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47560 * 179.97438 * 22 21 19 24 24 C 1.52998 * 109.47560 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.49881 * 243.62674 * 24 23 22 26 26 C 1.52999 * 117.49864 * 175.00070 * 24 23 22 27 27 C 1.47022 * 108.70013 * 24.13136 * 18 17 16 28 28 H 0.96994 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47206 * 60.00591 * 10 9 7 30 30 H 1.08994 * 109.47584 * 300.00054 * 10 9 7 31 31 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 32 32 H 1.09005 * 111.00403 * 271.93754 * 16 14 13 33 33 H 1.08993 * 111.00882 * 35.79071 * 16 14 13 34 34 H 1.09006 * 110.36719 * 204.14961 * 17 16 14 35 35 H 1.08998 * 110.36705 * 81.82857 * 17 16 14 36 36 H 1.09000 * 109.46898 * 300.00236 * 21 19 18 37 37 H 1.09004 * 109.46949 * 60.00090 * 21 19 18 38 38 H 1.08996 * 109.47264 * 300.00480 * 22 21 19 39 39 H 1.09004 * 109.47056 * 60.00095 * 22 21 19 40 40 H 1.09000 * 109.46894 * 300.00283 * 23 22 21 41 41 H 1.09004 * 109.46772 * 60.00027 * 23 22 21 42 42 H 1.09003 * 115.54874 * 29.33160 * 24 23 22 43 43 H 1.09000 * 117.49550 * 359.97438 * 25 24 23 44 44 H 1.09001 * 117.49567 * 145.02011 * 25 24 23 45 45 H 1.08997 * 117.49392 * 214.98011 * 26 24 23 46 46 H 1.08993 * 117.49625 * 0.02562 * 26 24 23 47 47 H 1.09005 * 109.88380 * 239.51983 * 27 18 17 48 48 H 1.09005 * 110.01113 * 118.43119 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.3840 -7.7714 0.5356 16 6 2.1746 -8.2416 -1.4530 17 6 2.3102 -9.7707 -1.2453 18 7 3.3287 -9.9194 -0.1899 19 6 4.1005 -11.0061 0.0094 20 8 4.9097 -11.0178 0.9127 21 6 3.9578 -12.2069 -0.8899 22 6 4.9417 -13.2930 -0.4505 23 6 4.7964 -14.5124 -1.3631 24 6 5.7799 -15.5988 -0.9234 25 6 6.8779 -15.9993 -1.9107 26 6 5.7086 -16.9485 -1.6404 27 6 3.3637 -8.6854 0.6087 28 1 -0.4849 0.8400 0.0004 29 1 3.1245 -3.7313 0.8895 30 1 3.1246 -3.7313 -0.8904 31 1 3.8011 -6.1834 -0.0004 32 1 1.1948 -7.9876 -1.8576 33 1 2.9705 -7.8624 -2.0939 34 1 2.6444 -10.2504 -2.1653 35 1 1.3607 -10.1948 -0.9186 36 1 2.9398 -12.5911 -0.8240 37 1 4.1711 -11.9175 -1.9189 38 1 5.9597 -12.9090 -0.5159 39 1 4.7279 -13.5822 0.5785 40 1 3.7783 -14.8962 -1.2972 41 1 5.0099 -14.2235 -2.3922 42 1 6.0299 -15.6050 0.1376 43 1 6.8992 -15.4892 -2.8738 44 1 7.8506 -16.2691 -1.4994 45 1 5.9121 -17.8426 -1.0512 46 1 4.9614 -17.0623 -2.4256 47 1 4.3590 -8.2432 0.5644 48 1 3.1009 -8.9034 1.6438 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688005577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:41 Heat of formation + Delta-G solvation = -85.701731 kcal Electronic energy + Delta-G solvation = -25703.487551 eV Core-core repulsion = 21883.728763 eV Total energy + Delta-G solvation = -3819.758788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42463 -40.48569 -38.76248 -38.32905 -35.34710 -34.71439 -34.57887 -32.25825 -30.70767 -29.91095 -28.32385 -27.62331 -24.73430 -23.27643 -23.01829 -22.34360 -21.72780 -21.33492 -20.12848 -19.85074 -18.24019 -18.13653 -17.43091 -16.93513 -16.87079 -16.58318 -16.47079 -16.37258 -15.91935 -15.46301 -15.17947 -14.89634 -14.78809 -14.54889 -14.40890 -13.93520 -13.68991 -13.49642 -13.27903 -13.16187 -13.07046 -12.91863 -12.88392 -12.69767 -12.61382 -12.56275 -12.35037 -11.98422 -11.91670 -11.74198 -11.72378 -11.13947 -11.13863 -10.99989 -10.87379 -10.70085 -10.27422 -10.18090 -9.74819 -8.65508 -8.34550 -6.12024 1.25393 1.42538 1.45363 1.55516 1.57877 1.59753 1.82154 2.27147 2.35505 2.94433 2.99934 3.26616 3.32624 3.53291 3.67747 3.78954 3.93166 4.00320 4.05734 4.08033 4.16391 4.19043 4.25068 4.28056 4.31414 4.42970 4.52135 4.54885 4.68276 4.72677 4.79276 4.80902 4.82195 4.89275 4.90981 5.00798 5.06922 5.10821 5.20179 5.26834 5.28918 5.36954 5.42460 5.43701 5.51677 6.20152 6.40441 6.47011 7.07314 7.10031 7.19943 8.74593 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.001430 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.782636 B =19571.829554 C =19833.114278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.146 6.146 10 C -0.132 4.132 11 C 0.541 3.459 12 O -0.558 6.558 13 N -0.706 5.706 14 C 0.135 3.865 15 H 0.091 0.909 16 C -0.142 4.142 17 C 0.104 3.896 18 N -0.619 5.619 19 C 0.522 3.478 20 O -0.588 6.588 21 C -0.127 4.127 22 C -0.097 4.097 23 C -0.081 4.081 24 C -0.164 4.164 25 C -0.187 4.187 26 C -0.180 4.180 27 C 0.107 3.893 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.416 0.584 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.492 -31.178 -6.597 33.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.283 4.283 11 C 0.327 3.673 12 O -0.436 6.436 13 N -0.361 5.361 14 C 0.030 3.970 15 H 0.109 0.891 16 C -0.181 4.181 17 C -0.018 4.018 18 N -0.353 5.353 19 C 0.313 3.687 20 O -0.469 6.469 21 C -0.167 4.167 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.183 4.183 25 C -0.224 4.224 26 C -0.217 4.217 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.253 0.747 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.831 -31.506 -6.103 33.564 hybrid contribution 2.017 1.593 0.427 2.606 sum 11.848 -29.913 -5.676 32.671 Atomic orbital electron populations 1.70171 1.07925 1.28605 1.48010 1.26080 0.95917 1.03190 0.93720 0.84988 0.78203 0.76205 0.78810 1.19259 1.20331 1.18341 1.23216 0.95357 0.92143 1.58879 0.89994 1.85524 1.10307 0.99046 1.97050 1.23386 1.03692 0.94390 1.06854 1.19980 0.86184 0.86427 0.74718 1.90694 1.17143 1.85939 1.49781 1.45688 1.10308 1.04334 1.75727 1.21904 0.97275 0.80133 0.97735 0.89079 1.23212 1.04188 0.94937 0.95745 1.22562 0.91855 0.95854 0.91543 1.48563 1.38916 1.14650 1.33148 1.21194 0.78687 0.83837 0.84994 1.90707 1.38113 1.82660 1.35408 1.21726 1.03489 0.91579 0.99872 1.21254 0.98648 0.94266 0.99398 1.21141 0.98864 0.92687 0.99132 1.22392 1.01221 0.96847 0.97807 1.23113 0.94152 1.04287 1.00832 1.23033 1.01474 0.93560 1.03584 1.21936 0.99370 0.85044 0.95374 0.91983 0.87364 0.87066 0.74671 0.89400 0.89425 0.86948 0.89283 0.86418 0.86315 0.92882 0.92876 0.90389 0.90653 0.88736 0.88242 0.89085 0.88734 0.87992 0.90659 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -30.87 9.50 67.95 0.65 -30.22 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -7.93 20.57 -56.49 -1.16 -9.09 16 10 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 11 C 0.54 18.54 7.85 87.66 0.69 19.23 16 12 O -0.56 -24.06 15.51 -3.01 -0.05 -24.11 16 13 N -0.71 -16.21 5.18 -436.92 -2.26 -18.47 16 14 C 0.14 2.69 3.32 46.18 0.15 2.84 16 15 H 0.09 2.19 7.55 -2.39 -0.02 2.17 16 16 C -0.14 -2.12 6.77 31.98 0.22 -1.90 16 17 C 0.10 1.03 6.69 86.86 0.58 1.61 16 18 N -0.62 -9.75 3.33 -811.79 -2.70 -12.45 16 19 C 0.52 9.57 7.85 87.66 0.69 10.26 16 20 O -0.59 -16.38 16.31 -3.04 -0.05 -16.43 16 21 C -0.13 -1.21 4.71 29.85 0.14 -1.07 16 22 C -0.10 -1.20 4.46 30.59 0.14 -1.07 16 23 C -0.08 -0.67 5.50 30.59 0.17 -0.51 16 24 C -0.16 -1.73 5.74 -10.79 -0.06 -1.79 16 25 C -0.19 -1.82 10.18 30.60 0.31 -1.50 16 26 C -0.18 -1.58 10.25 30.60 0.31 -1.27 16 27 C 0.11 1.95 6.62 86.73 0.57 2.52 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 30 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 31 H 0.42 7.09 8.37 -92.71 -0.78 6.32 16 32 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 0.48 7.48 -2.38 -0.02 0.47 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.12 0.58 7.85 -2.39 -0.02 0.56 16 38 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 39 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.49 7.88 -2.39 -0.02 0.47 16 42 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 43 H 0.10 0.84 8.03 -2.39 -0.02 0.82 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 1.37 7.72 -2.38 -0.02 1.35 16 48 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -80.23 410.86 1.72 -78.51 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.17 Total: 17.99 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.46 Total: -6.08 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -4.68 Total: -85.95 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.10 Total: -40.54 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -80.23 1.72 -78.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688005577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.193 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds