Wall clock time and date at job start Tue Mar 31 2020 23:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47091 * 269.99856 * 3 2 1 5 5 H 1.48503 * 109.47135 * 30.00109 * 3 2 1 6 6 H 1.48500 * 109.47126 * 150.00007 * 3 2 1 7 7 C 1.38799 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99819 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00464 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00395 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47477 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00038 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00130 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99825 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46889 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.81704 * 51.66624 * 15 14 13 17 17 C 1.55023 * 110.87802 * 288.31717 * 15 14 13 18 18 C 1.54255 * 104.28301 * 203.89908 * 17 15 14 19 19 C 1.53875 * 106.59692 * 23.51860 * 18 17 15 20 20 C 1.54266 * 106.60144 * 359.97438 * 19 18 17 21 21 H 1.09002 * 110.48483 * 95.19611 * 20 19 18 22 22 N 1.46493 * 110.48652 * 217.71494 * 20 19 18 23 23 C 1.34784 * 119.99864 * 271.75348 * 22 20 19 24 24 O 1.21283 * 119.99649 * 359.72839 * 23 22 20 25 25 C 1.50694 * 119.99988 * 179.72721 * 23 22 20 26 26 C 1.53777 * 113.61568 * 277.49596 * 25 23 22 27 27 C 1.53775 * 87.08539 * 220.02224 * 26 25 23 28 28 C 1.53781 * 87.08192 * 25.43251 * 27 26 25 29 29 H 0.97000 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47376 * 59.99790 * 10 9 7 31 31 H 1.09004 * 109.46955 * 300.00223 * 10 9 7 32 32 H 0.97000 * 120.00091 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.47345 * 59.99517 * 14 13 11 34 34 H 1.09004 * 109.47159 * 299.99844 * 14 13 11 35 35 H 1.09008 * 110.52304 * 85.15368 * 17 15 14 36 36 H 1.09001 * 110.47629 * 322.62667 * 17 15 14 37 37 H 1.09002 * 110.03719 * 264.23337 * 18 17 15 38 38 H 1.09009 * 110.07623 * 142.82096 * 18 17 15 39 39 H 1.09001 * 110.03631 * 240.71294 * 19 18 17 40 40 H 1.09007 * 110.03302 * 119.28509 * 19 18 17 41 41 H 0.97000 * 120.00740 * 91.48041 * 22 20 19 42 42 H 1.09005 * 112.85131 * 48.80593 * 25 23 22 43 43 H 1.09004 * 113.61546 * 334.57149 * 26 25 23 44 44 H 1.09003 * 113.61384 * 105.47433 * 26 25 23 45 45 H 1.09005 * 113.61565 * 270.88849 * 27 26 25 46 46 H 1.08999 * 113.69489 * 139.99610 * 27 26 25 47 47 H 1.09001 * 113.61337 * 220.02490 * 28 27 26 48 48 H 1.08993 * 113.61593 * 89.11741 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3432 0.0049 14 6 2.3303 -7.7152 0.0061 15 6 3.5023 -8.6986 0.0068 16 1 4.2053 -8.4629 0.8058 17 6 4.2181 -8.7062 -1.3682 18 6 4.9041 -10.0863 -1.4326 19 6 4.1266 -11.0086 -0.4772 20 6 2.9957 -10.1565 0.1349 21 1 2.0712 -10.2891 -0.4271 22 7 2.7935 -10.5079 1.5426 23 6 1.9470 -11.5030 1.8739 24 8 1.3489 -12.1042 1.0068 25 6 1.7437 -11.8686 3.3217 26 6 2.8275 -12.8069 3.8782 27 6 1.6996 -13.5393 4.6239 28 6 0.7484 -13.0220 3.5318 29 1 -0.4850 0.8400 -0.0004 30 1 3.1244 -3.7307 0.8927 31 1 3.1244 -3.7322 -0.8872 32 1 3.8009 -6.1836 0.0059 33 1 1.7219 -7.8761 -0.8839 34 1 1.7213 -7.8743 0.8961 35 1 4.9598 -7.9089 -1.4174 36 1 3.4935 -8.6022 -2.1759 37 1 5.9417 -10.0031 -1.1093 38 1 4.8602 -10.4790 -2.4486 39 1 4.7869 -11.3729 0.3098 40 1 3.7048 -11.8483 -1.0297 41 1 3.2718 -10.0271 2.2362 42 1 1.5478 -11.0022 3.9535 43 1 3.3128 -13.4149 3.1146 44 1 3.5375 -12.3101 4.5395 45 1 1.4925 -13.1302 5.6128 46 1 1.8099 -14.6237 4.6290 47 1 -0.2201 -12.6988 3.9136 48 1 0.6652 -13.6887 2.6736 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689111929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:51 Heat of formation + Delta-G solvation = -77.764699 kcal Electronic energy + Delta-G solvation = -26591.366429 eV Core-core repulsion = 22771.951816 eV Total energy + Delta-G solvation = -3819.414613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76660 -39.52866 -38.61617 -37.36548 -34.55601 -33.89697 -32.43575 -30.74328 -28.76484 -28.62184 -26.53688 -26.02052 -25.51898 -24.32299 -21.66981 -20.98961 -20.62844 -20.06445 -19.58893 -17.96857 -17.60623 -17.07177 -16.34264 -15.94446 -15.87850 -15.35378 -15.15496 -15.03380 -14.81144 -14.64670 -14.03981 -13.93157 -13.81289 -13.22959 -13.18407 -12.90799 -12.86598 -12.58276 -12.53697 -12.47734 -11.96944 -11.69795 -11.59847 -11.54436 -11.15357 -11.09090 -11.07075 -11.03109 -10.95858 -10.81720 -10.79234 -10.76389 -9.94428 -9.82497 -9.47213 -9.30304 -9.07864 -8.89506 -8.24078 -6.50773 -6.22332 -3.92986 2.34195 2.84517 3.02185 3.09692 3.21554 3.27079 3.30918 3.67049 4.07776 4.12952 4.15682 4.19604 4.22023 4.33814 4.39261 4.42553 4.77155 4.87170 4.97329 5.04037 5.06284 5.12729 5.14254 5.15290 5.21818 5.24216 5.24893 5.35415 5.44705 5.54478 5.57624 5.59034 5.65213 5.68214 5.68859 5.79146 5.80611 5.87727 5.88651 5.99706 6.01570 6.12407 6.23850 6.59520 7.19524 7.58634 7.69341 7.95628 8.34352 8.61000 9.22856 10.85068 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.001934 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.593819 B =14477.965766 C =15532.597282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.110 4.110 16 H 0.088 0.912 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.133 4.133 20 C 0.148 3.852 21 H 0.098 0.902 22 N -0.723 5.723 23 C 0.524 3.476 24 O -0.538 6.538 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.143 4.143 28 C -0.119 4.119 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.401 0.599 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 -26.696 5.550 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.393 5.393 14 C 0.006 3.994 15 C -0.129 4.129 16 H 0.107 0.893 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.172 4.172 20 C 0.042 3.958 21 H 0.116 0.884 22 N -0.374 5.374 23 C 0.311 3.689 24 O -0.414 6.414 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.180 4.180 28 C -0.156 4.156 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.235 0.765 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.842 -27.364 4.918 29.494 hybrid contribution 2.724 1.707 0.332 3.232 sum 12.567 -25.658 5.251 29.048 Atomic orbital electron populations 1.70020 1.05947 1.27458 1.46822 1.25000 0.95037 0.99044 0.94558 0.86163 0.79387 0.81566 0.78347 1.20271 1.20751 1.19713 1.22865 0.94892 0.91662 1.58967 0.90939 1.85422 1.04935 0.96322 1.96711 1.23525 1.06552 0.95431 1.04866 1.20315 0.86541 0.86292 0.75199 1.90713 1.15396 1.85602 1.47372 1.45975 1.09845 1.05388 1.78048 1.21249 0.95113 0.80452 1.02599 1.22646 0.97326 0.93679 0.99278 0.89344 1.22424 0.99730 0.97334 0.96151 1.22089 0.99231 0.94946 0.99757 1.22521 0.97011 0.98582 0.99067 1.21799 0.99435 0.92488 0.82032 0.88358 1.46078 1.46023 1.36899 1.08387 1.20554 0.78181 0.79111 0.91092 1.90697 1.47630 1.52050 1.51038 1.22835 1.00432 0.99607 0.93368 1.22813 0.96042 0.97471 0.99741 1.22835 0.96292 1.00648 0.98233 1.22809 0.97173 0.96347 0.99302 0.92176 0.89283 0.89251 0.76914 0.91358 0.91598 0.90846 0.90693 0.91610 0.91449 0.91417 0.91156 0.76478 0.86802 0.89762 0.90655 0.89799 0.90974 0.90881 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 12 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 13 N -0.74 -9.29 5.48 -60.29 -0.33 -9.62 16 14 C 0.13 1.46 5.12 -4.04 -0.02 1.44 16 15 C -0.11 -0.82 2.51 -88.57 -0.22 -1.04 16 16 H 0.09 0.54 8.02 -51.93 -0.42 0.12 16 17 C -0.12 -0.82 6.21 -25.01 -0.16 -0.98 16 18 C -0.12 -0.76 6.80 -25.62 -0.17 -0.94 16 19 C -0.13 -0.96 6.54 -25.61 -0.17 -1.13 16 20 C 0.15 1.21 2.63 -66.29 -0.17 1.04 16 21 H 0.10 1.05 7.51 -51.93 -0.39 0.66 16 22 N -0.72 -5.45 5.10 -52.21 -0.27 -5.72 16 23 C 0.52 5.05 7.35 -10.98 -0.08 4.97 16 24 O -0.54 -7.34 15.58 5.56 0.09 -7.25 16 25 C -0.14 -0.98 4.15 -90.96 -0.38 -1.36 16 26 C -0.12 -0.66 7.63 -25.92 -0.20 -0.86 16 27 C -0.14 -0.76 8.08 -25.92 -0.21 -0.97 16 28 C -0.12 -0.87 7.41 -25.92 -0.19 -1.06 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 32 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 33 H 0.07 0.87 7.99 -51.93 -0.42 0.45 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.07 0.60 7.94 -51.93 -0.41 0.18 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 40 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.40 2.09 8.55 -40.82 -0.35 1.74 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.51 8.09 -51.93 -0.42 0.08 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.85 7.43 -51.93 -0.39 0.46 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -36.28 405.99 -10.61 -46.89 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.17 Total: 1.24 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.64 Total: -6.98 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.14 Total: -40.75 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.17 Total: -18.96 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.28 -10.61 -46.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689111929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.870 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds