Wall clock time and date at job start Wed Apr 1 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47426 * 270.00375 * 3 2 1 5 5 H 1.48495 * 109.47155 * 30.00466 * 3 2 1 6 6 H 1.48501 * 109.47275 * 150.00582 * 3 2 1 7 7 C 1.38813 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00226 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99892 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47162 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49564 * 59.09556 * 11 10 9 13 13 C 1.53195 * 109.49549 * 299.03535 * 11 10 9 14 14 N 1.46922 * 108.77473 * 294.68153 * 13 11 10 15 15 C 1.34782 * 120.63061 * 126.37165 * 14 13 11 16 16 O 1.21277 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99710 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.46978 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47342 * 179.97438 * 18 17 15 20 20 F 1.39903 * 109.47464 * 179.97438 * 19 18 17 21 21 C 1.46929 * 118.73839 * 306.39222 * 14 13 11 22 22 C 1.53198 * 108.77515 * 53.60992 * 21 14 13 23 23 C 1.53040 * 109.31265 * 305.36312 * 22 21 14 24 24 H 1.08997 * 109.45793 * 301.34674 * 23 22 21 25 25 C 1.52997 * 109.45735 * 181.38234 * 23 22 21 26 26 F 1.39893 * 109.47526 * 306.47262 * 25 23 22 27 27 F 1.39898 * 109.46748 * 66.47659 * 25 23 22 28 28 F 1.39901 * 109.46689 * 186.47004 * 25 23 22 29 29 H 0.97005 * 120.00466 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00162 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47196 * 59.99588 * 10 9 7 32 32 H 1.09004 * 109.47032 * 299.99431 * 10 9 7 33 33 H 1.08994 * 109.58796 * 54.46898 * 13 11 10 34 34 H 1.09003 * 109.58335 * 174.89539 * 13 11 10 35 35 H 1.09000 * 109.47236 * 299.99928 * 17 15 14 36 36 H 1.08998 * 109.47735 * 60.00127 * 17 15 14 37 37 H 1.09000 * 109.46952 * 299.99948 * 18 17 15 38 38 H 1.08996 * 109.47245 * 59.99885 * 18 17 15 39 39 H 1.09000 * 109.47136 * 299.99936 * 19 18 17 40 40 H 1.09007 * 109.47387 * 59.99846 * 19 18 17 41 41 H 1.09005 * 109.58764 * 173.39604 * 21 14 13 42 42 H 1.09001 * 109.58569 * 293.67944 * 21 14 13 43 43 H 1.09002 * 109.49156 * 65.31408 * 22 21 14 44 44 H 1.08997 * 109.49368 * 185.41393 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0024 12 1 5.8783 -1.6056 0.8788 13 6 5.9900 -1.4094 -1.2656 14 7 5.7511 -2.2624 -2.4377 15 6 4.9807 -1.8304 -3.4559 16 8 4.4768 -0.7283 -3.4097 17 6 4.7447 -2.7175 -4.6510 18 6 3.8438 -1.9934 -5.6535 19 6 3.6046 -2.8937 -6.8672 20 9 2.7804 -2.2319 -7.7837 21 6 6.3675 -3.5955 -2.4787 22 6 5.9896 -4.3529 -1.2018 23 6 6.3822 -3.5162 0.0180 24 1 7.4534 -3.3168 -0.0080 25 6 6.0377 -4.2845 1.2953 26 9 4.6933 -4.6697 1.2597 27 9 6.8465 -5.4223 1.3876 28 9 6.2584 -3.4641 2.4068 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8484 -3.0427 -0.8907 32 1 3.8491 -3.0422 0.8892 33 1 5.3750 -0.5121 -1.3352 34 1 7.0430 -1.1309 -1.2249 35 1 5.6986 -2.9519 -5.1236 36 1 4.2623 -3.6403 -4.3290 37 1 2.8899 -1.7587 -5.1812 38 1 4.3266 -1.0708 -5.9755 39 1 4.5587 -3.1280 -7.3394 40 1 3.1220 -3.8167 -6.5456 41 1 6.0016 -4.1407 -3.3488 42 1 7.4512 -3.4952 -2.5395 43 1 4.9144 -4.5317 -1.1897 44 1 6.5178 -5.3060 -1.1745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691445036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:10 Heat of formation + Delta-G solvation = -229.225528 kcal Electronic energy + Delta-G solvation = -32129.079382 eV Core-core repulsion = 27195.027019 eV Total energy + Delta-G solvation = -4934.052363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.13804 -47.65814 -47.62414 -47.54221 -40.44196 -38.08587 -34.88944 -34.07719 -33.48298 -31.85553 -30.40990 -28.15690 -27.15037 -25.60146 -23.73154 -23.28101 -22.17895 -21.79234 -20.15544 -18.91964 -18.36750 -18.24013 -17.94945 -17.23507 -16.79542 -16.59837 -16.04597 -15.64620 -15.33992 -15.19827 -14.71527 -14.61203 -14.53270 -14.32160 -14.04287 -13.94077 -13.87711 -13.78108 -13.63862 -13.34894 -13.10829 -12.97926 -12.84747 -12.75679 -12.34018 -12.18711 -11.70659 -11.60319 -11.45642 -11.27589 -11.12394 -10.99344 -10.79582 -10.74115 -10.66489 -10.46407 -10.04896 -9.61999 -9.50016 -8.78287 -8.63483 -7.12670 -5.67896 -3.02593 2.68811 2.78759 2.97710 3.45012 3.51106 3.56539 3.73452 3.86368 3.97501 4.27197 4.49178 4.58175 4.63235 4.64074 4.69859 4.78454 4.85633 4.86588 4.98611 5.01466 5.08058 5.16585 5.17874 5.32779 5.38650 5.43340 5.56274 5.61718 5.63560 5.70447 5.78193 5.88898 5.97297 6.15065 6.21283 6.46478 6.63024 6.67629 7.41667 8.05663 8.33276 8.50114 9.28856 10.02051 10.20274 11.50629 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007547 B = 0.005438 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3709.366387 B = 5147.406636 C = 7828.710058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.749 5.749 10 C 0.150 3.850 11 C -0.118 4.118 12 H 0.095 0.905 13 C 0.124 3.876 14 N -0.613 5.613 15 C 0.515 3.485 16 O -0.513 6.513 17 C -0.135 4.135 18 C -0.142 4.142 19 C 0.064 3.936 20 F -0.218 7.218 21 C 0.116 3.884 22 C -0.141 4.141 23 C -0.121 4.121 24 H 0.113 0.887 25 C 0.454 3.546 26 F -0.169 7.169 27 F -0.189 7.189 28 F -0.181 7.181 29 H 0.258 0.742 30 H 0.359 0.641 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.408 -12.426 -7.291 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.395 5.395 10 C 0.023 3.977 11 C -0.138 4.138 12 H 0.114 0.886 13 C 0.002 3.998 14 N -0.348 5.348 15 C 0.302 3.698 16 O -0.386 6.386 17 C -0.175 4.175 18 C -0.180 4.180 19 C 0.009 3.991 20 F -0.199 7.199 21 C -0.008 4.008 22 C -0.179 4.179 23 C -0.142 4.142 24 H 0.131 0.869 25 C 0.400 3.600 26 F -0.151 7.151 27 F -0.171 7.171 28 F -0.163 7.163 29 H 0.068 0.932 30 H 0.193 0.807 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.849 -11.892 -7.275 23.444 hybrid contribution 0.540 0.961 0.425 1.181 sum 19.388 -10.931 -6.850 23.288 Atomic orbital electron populations 1.69699 1.05102 1.25695 1.57850 1.24603 0.95156 0.97097 1.01931 0.86569 0.78980 0.85125 0.77994 1.20664 1.21970 1.20619 1.18941 0.80453 0.94537 1.42836 0.89491 1.42611 1.04036 1.01699 1.91106 1.21072 0.86643 0.90132 0.99862 1.21884 0.98261 0.93842 0.99780 0.88635 1.21536 1.00651 0.94832 0.82810 1.47986 1.50753 1.16605 1.19495 1.20480 0.77752 0.87813 0.83709 1.90802 1.47279 1.21436 1.79120 1.21543 1.01542 0.99722 0.94707 1.21943 1.02324 0.99200 0.94567 1.21983 0.93603 0.95277 0.88239 1.92775 1.75019 1.83374 1.68776 1.21617 0.98052 0.83179 0.97927 1.22093 1.04611 0.98243 0.92946 1.22420 1.03650 0.96815 0.91267 0.86854 1.20573 0.74790 0.77921 0.86723 1.93171 1.33836 1.91422 1.96644 1.93155 1.73533 1.53616 1.96789 1.93186 1.94453 1.72263 1.56371 0.93187 0.80748 0.95203 0.93787 0.87625 0.91713 0.88977 0.88525 0.89281 0.90069 0.91041 0.90733 0.89025 0.91018 0.88884 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.46 13.97 55.49 0.78 -29.68 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 23.50 27.73 -169.99 -4.71 18.78 16 4 H -0.28 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.28 -6.93 6.52 56.52 0.37 -6.57 16 7 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -18.12 5.06 -59.91 -0.30 -18.42 16 10 C 0.15 2.83 4.53 -4.04 -0.02 2.81 16 11 C -0.12 -1.63 2.12 -90.49 -0.19 -1.82 16 12 H 0.10 1.34 7.61 -51.93 -0.40 0.94 16 13 C 0.12 1.69 5.73 -3.71 -0.02 1.67 16 14 N -0.61 -7.41 2.39 -172.76 -0.41 -7.83 16 15 C 0.51 7.47 7.70 -10.99 -0.08 7.39 16 16 O -0.51 -10.32 15.39 5.56 0.09 -10.24 16 17 C -0.14 -1.31 4.05 -27.88 -0.11 -1.42 16 18 C -0.14 -1.65 4.96 -26.73 -0.13 -1.79 16 19 C 0.06 0.58 7.55 37.16 0.28 0.87 16 20 F -0.22 -2.81 17.36 2.25 0.04 -2.77 16 21 C 0.12 0.86 6.34 -3.71 -0.02 0.84 16 22 C -0.14 -1.20 4.75 -26.61 -0.13 -1.32 16 23 C -0.12 -1.23 2.02 -90.58 -0.18 -1.41 16 24 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 25 C 0.45 5.49 2.60 37.16 0.10 5.58 16 26 F -0.17 -2.45 13.37 2.25 0.03 -2.42 16 27 F -0.19 -2.10 17.03 2.25 0.04 -2.06 16 28 F -0.18 -2.46 16.52 2.25 0.04 -2.42 16 29 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 30 H 0.36 8.64 4.44 -40.82 -0.18 8.46 16 31 H 0.03 0.58 5.99 -51.93 -0.31 0.27 16 32 H 0.04 0.89 5.42 -51.93 -0.28 0.60 16 33 H 0.11 1.87 5.67 -51.93 -0.29 1.58 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 36 H 0.10 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.09 0.48 5.93 -51.93 -0.31 0.18 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 1.00 5.91 -51.93 -0.31 0.69 16 44 H 0.09 0.54 7.95 -51.93 -0.41 0.13 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -37.11 355.72 -5.68 -42.79 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.85 Total: 4.50 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.77 Total: 4.41 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.06 Total: -55.93 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 0.14 Total: -9.67 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.71 Total: 18.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.11 -5.68 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691445036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.434 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds