Wall clock time and date at job start Tue Mar 31 2020 23:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00048 * 2 1 4 4 H 1.48494 * 109.47403 * 270.00394 * 3 2 1 5 5 H 1.48498 * 109.47041 * 30.00121 * 3 2 1 6 6 H 1.48497 * 109.47017 * 150.00128 * 3 2 1 7 7 C 1.38795 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00244 * 0.02562 * 7 2 1 9 9 S 1.76198 * 119.99810 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00237 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00376 * 180.02562 * 17 16 15 19 19 O 1.21288 * 119.99593 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00115 * 180.02562 * 18 17 16 21 21 C 1.53005 * 109.46783 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.63765 * 55.00037 * 21 20 18 23 23 C 1.53018 * 109.64141 * 294.57812 * 21 20 18 24 24 C 1.50170 * 110.09118 * 191.09577 * 23 21 20 25 25 C 1.29439 * 124.14799 * 16.72316 * 24 23 21 26 26 C 1.50067 * 124.07565 * 359.75049 * 25 24 23 27 27 C 1.53028 * 110.14637 * 17.13745 * 26 25 24 28 28 H 0.97005 * 120.00180 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47573 * 59.99523 * 10 9 7 30 30 H 1.09002 * 109.46856 * 300.00046 * 10 9 7 31 31 H 0.97005 * 119.99680 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 33 33 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 34 34 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 35 35 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 36 36 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 37 37 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 38 38 H 0.97004 * 119.99396 * 0.02562 * 17 16 15 39 39 H 1.09002 * 109.46793 * 299.99519 * 20 18 17 40 40 H 1.08992 * 109.46831 * 59.99969 * 20 18 17 41 41 H 1.08999 * 109.35927 * 311.08763 * 23 21 20 42 42 H 1.08997 * 109.35977 * 70.67675 * 23 21 20 43 43 H 1.08000 * 117.88885 * 196.91972 * 24 23 21 44 44 H 1.07997 * 117.96366 * 179.73714 * 25 24 23 45 45 H 1.08995 * 109.36396 * 256.93120 * 26 25 24 46 46 H 1.08999 * 109.24735 * 137.27065 * 26 25 24 47 47 H 1.09001 * 109.64243 * 190.87519 * 27 26 25 48 48 H 1.09005 * 109.64202 * 70.24814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0014 9 16 3.7722 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2325 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0457 -4.4947 -0.0030 14 6 7.4907 -4.7358 -0.0037 15 6 7.7563 -6.2425 -0.0034 16 6 9.2654 -6.4944 -0.0035 17 7 9.5199 -7.9371 -0.0038 18 6 10.7863 -8.3981 -0.0034 19 8 11.7154 -7.6184 -0.0023 20 6 11.0480 -9.8822 -0.0043 21 6 12.5572 -10.1339 -0.0042 22 1 13.0153 -9.6139 0.8371 23 6 13.1634 -9.6264 -1.3144 24 6 14.5809 -10.1043 -1.4461 25 6 15.0893 -11.0711 -0.7516 26 6 14.3344 -11.8473 0.2875 27 6 12.8287 -11.6392 0.1102 28 1 -0.4851 0.8401 0.0004 29 1 3.6433 -3.4311 -0.8926 30 1 3.6440 -3.4321 0.8873 31 1 5.4290 -5.2435 -0.0029 32 1 7.9340 -4.2889 0.8862 33 1 7.9332 -4.2886 -0.8937 34 1 7.3138 -6.6894 0.8869 35 1 7.3130 -6.6898 -0.8931 36 1 9.7083 -6.0475 -0.8936 37 1 9.7085 -6.0472 0.8863 38 1 8.7767 -8.5606 -0.0043 39 1 10.6046 -10.3298 0.8852 40 1 10.6056 -10.3285 -0.8948 41 1 12.5783 -10.0036 -2.1532 42 1 13.1433 -8.5367 -1.3235 43 1 15.2168 -9.6074 -2.1639 44 1 16.1208 -11.3357 -0.9312 45 1 14.6318 -11.5073 1.2794 46 1 14.5673 -12.9070 0.1839 47 1 12.2990 -12.0426 0.9733 48 1 12.4936 -12.1421 -0.7970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703318731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:51 Heat of formation + Delta-G solvation = -115.012216 kcal Electronic energy + Delta-G solvation = -25200.422276 eV Core-core repulsion = 21379.392490 eV Total energy + Delta-G solvation = -3821.029786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04185 -40.63332 -39.13687 -37.19560 -35.49915 -34.66906 -33.79122 -32.64800 -31.59303 -30.65675 -28.45861 -27.84851 -25.95973 -24.07979 -22.86927 -22.38473 -21.75660 -21.06177 -19.86767 -18.87570 -17.99417 -17.65930 -17.51889 -17.14403 -17.10240 -16.90934 -16.47872 -16.44567 -15.72720 -15.65820 -15.21139 -14.97639 -14.88085 -14.61002 -14.43645 -14.06690 -13.79617 -13.60589 -13.37220 -13.36619 -13.26721 -13.14421 -13.00918 -12.88840 -12.60653 -12.60251 -12.42543 -12.06054 -11.86654 -11.62806 -11.49225 -11.16972 -11.04949 -11.00273 -10.67097 -10.52586 -10.15638 -10.06139 -9.83054 -8.99411 -8.51498 -6.22146 0.99594 1.31480 1.42179 1.47106 1.55810 1.56801 1.71491 2.07720 2.25064 2.41301 2.73226 2.87128 3.70061 3.75201 3.81423 3.87955 3.97671 3.99765 4.06432 4.16677 4.25015 4.29581 4.44419 4.48585 4.49650 4.51882 4.59018 4.60708 4.74563 4.78702 4.80487 4.84581 4.96055 5.05529 5.09861 5.10556 5.14731 5.24755 5.38359 5.39951 5.48850 5.53928 5.70991 5.79575 6.09797 6.11717 6.47926 6.62177 6.94194 7.20803 7.34555 8.60835 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.049999 B = 0.001256 C = 0.001235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.872057 B =22294.787130 C =22663.795769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.121 3.879 15 C -0.122 4.122 16 C 0.123 3.877 17 N -0.719 5.719 18 C 0.504 3.496 19 O -0.584 6.584 20 C -0.129 4.129 21 C -0.071 4.071 22 H 0.056 0.944 23 C -0.090 4.090 24 C -0.168 4.168 25 C -0.165 4.165 26 C -0.094 4.094 27 C -0.111 4.111 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.420 0.580 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.419 0.581 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.501 -31.204 -0.119 39.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.364 5.364 14 C -0.003 4.003 15 C -0.160 4.160 16 C -0.002 4.002 17 N -0.373 5.373 18 C 0.292 3.708 19 O -0.464 6.464 20 C -0.169 4.169 21 C -0.090 4.090 22 H 0.074 0.926 23 C -0.127 4.127 24 C -0.186 4.186 25 C -0.183 4.183 26 C -0.131 4.131 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.257 0.743 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.256 0.744 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.265 -29.030 -0.118 39.149 hybrid contribution -1.447 -0.312 -0.184 1.492 sum 24.818 -29.342 -0.302 38.432 Atomic orbital electron populations 1.70013 1.07274 1.29002 1.49201 1.25525 0.95219 1.02144 0.92887 0.85892 0.80686 0.79773 0.80189 1.18752 1.18342 1.16180 1.22463 0.90196 0.96738 1.58200 0.91770 1.84777 1.06509 1.06560 1.97599 1.23273 0.95802 0.99398 1.07670 1.19999 0.89444 0.83476 0.75285 1.90700 1.59422 1.44038 1.50257 1.45653 1.08621 1.06795 1.75312 1.21240 0.80109 0.96988 1.01988 1.21801 0.94849 0.93706 1.05643 1.21072 0.95693 0.81660 1.01738 1.45901 1.08273 1.07890 1.75189 1.21383 0.82262 0.92507 0.74647 1.90701 1.44516 1.60104 1.51048 1.21809 0.97783 0.90365 1.06895 1.20919 0.93766 0.96716 0.97592 0.92560 1.20590 0.93591 1.00794 0.97752 1.22203 0.97520 0.98268 1.00658 1.22257 1.00192 0.97557 0.98266 1.20513 0.94878 1.00157 0.97570 1.21667 0.95763 0.94183 1.03186 0.91376 0.86606 0.86577 0.74267 0.92336 0.92327 0.88322 0.88325 0.92535 0.92534 0.74393 0.86017 0.86363 0.90682 0.91982 0.88566 0.87634 0.90965 0.89702 0.89691 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 13.97 21.65 0.30 -55.13 16 2 C 0.05 2.78 5.50 84.86 0.47 3.25 16 3 Si 0.91 44.86 27.74 68.60 1.90 46.77 16 4 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 7 C -0.53 -30.42 10.04 67.95 0.68 -29.73 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 10 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 11 C 0.53 17.43 7.85 87.66 0.69 18.12 16 12 O -0.57 -23.90 15.86 -3.01 -0.05 -23.95 16 13 N -0.71 -14.47 5.56 -463.07 -2.57 -17.04 16 14 C 0.12 2.13 5.67 86.38 0.49 2.62 16 15 C -0.12 -1.02 5.44 30.59 0.17 -0.85 16 16 C 0.12 1.53 5.67 86.38 0.49 2.02 16 17 N -0.72 -6.43 5.56 -463.06 -2.57 -9.00 16 18 C 0.50 7.03 7.59 87.66 0.66 7.70 16 19 O -0.58 -14.13 14.06 -3.05 -0.04 -14.17 16 20 C -0.13 -0.84 5.18 29.85 0.15 -0.69 16 21 C -0.07 -0.79 1.87 -10.66 -0.02 -0.81 16 22 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 23 C -0.09 -1.34 5.06 29.69 0.15 -1.19 16 24 C -0.17 -2.49 9.80 27.07 0.27 -2.23 16 25 C -0.16 -2.03 9.80 27.04 0.27 -1.77 16 26 C -0.09 -0.82 6.12 29.66 0.18 -0.64 16 27 C -0.11 -0.76 5.31 30.73 0.16 -0.60 16 28 H 0.28 15.49 8.31 -92.70 -0.77 14.71 16 29 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 30 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.42 5.32 8.47 -92.70 -0.79 4.53 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.42 0.68 8.47 -92.71 -0.79 -0.10 16 39 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.12 0.25 8.10 -2.39 -0.02 0.23 16 41 H 0.07 0.93 8.07 -2.39 -0.02 0.91 16 42 H 0.06 1.29 6.25 -2.39 -0.01 1.28 16 43 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.07 0.43 8.13 -2.38 -0.02 0.41 16 Total: -1.00 -82.34 404.90 0.52 -81.82 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.65 Total: 9.12 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.25 Total: -8.33 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -4.84 Total: -81.17 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.09 Total: -38.12 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -82.34 0.52 -81.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703318731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.187 kcal (2) G-P(sol) polarization free energy of solvation -82.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds