Wall clock time and date at job start Tue Mar 31 2020 22:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48500 * 109.47310 * 270.00426 * 3 2 1 5 5 H 1.48497 * 109.46917 * 30.00301 * 3 2 1 6 6 H 1.48492 * 109.46998 * 150.00237 * 3 2 1 7 7 C 1.38796 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00725 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99775 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99971 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47033 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00038 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99939 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00229 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.87974 * 37.43020 * 14 13 11 16 16 C 1.55157 * 111.00617 * 273.54840 * 14 13 11 17 17 C 1.54323 * 102.94087 * 206.42142 * 16 14 13 18 18 N 1.47021 * 107.27207 * 22.19232 * 17 16 14 19 19 C 1.34769 * 125.64735 * 181.02127 * 18 17 16 20 20 O 1.21277 * 120.00209 * 180.02562 * 19 18 17 21 21 C 1.50707 * 120.00310 * 0.02732 * 19 18 17 22 22 C 1.52997 * 109.47458 * 180.02562 * 21 19 18 23 23 C 1.54891 * 110.75763 * 71.66687 * 22 21 19 24 24 C 1.54267 * 104.19324 * 156.25900 * 23 22 21 25 25 C 1.53876 * 106.59870 * 336.39035 * 24 23 22 26 26 C 1.54261 * 106.59990 * 0.02562 * 25 24 23 27 27 C 1.47419 * 108.70277 * 1.28755 * 18 17 16 28 28 H 0.96998 * 120.00110 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46978 * 59.99873 * 10 9 7 30 30 H 1.09004 * 109.46905 * 300.00217 * 10 9 7 31 31 H 0.96996 * 119.99966 * 0.02562 * 13 11 10 32 32 H 1.09008 * 110.71856 * 88.05747 * 16 14 13 33 33 H 1.08996 * 110.87025 * 324.85924 * 16 14 13 34 34 H 1.08998 * 109.88057 * 262.77241 * 17 16 14 35 35 H 1.08994 * 109.87786 * 141.61210 * 17 16 14 36 36 H 1.09000 * 109.46966 * 59.99705 * 21 19 18 37 37 H 1.09005 * 109.46703 * 299.99952 * 21 19 18 38 38 H 1.09001 * 110.66811 * 308.23292 * 22 21 19 39 39 H 1.09004 * 110.48613 * 37.58272 * 23 22 21 40 40 H 1.08994 * 110.48745 * 274.93690 * 23 22 21 41 41 H 1.08995 * 110.03032 * 217.10762 * 24 23 22 42 42 H 1.08998 * 110.03405 * 95.67701 * 24 23 22 43 43 H 1.08998 * 110.02768 * 119.28860 * 25 24 23 44 44 H 1.08994 * 110.03051 * 240.71540 * 25 24 23 45 45 H 1.09000 * 110.48928 * 142.28640 * 26 25 24 46 46 H 1.08999 * 110.48469 * 264.93049 * 26 25 24 47 47 H 1.09003 * 110.37037 * 94.48288 * 27 18 17 48 48 H 1.09005 * 110.36645 * 216.80441 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0457 -4.4946 -0.0011 14 6 7.4908 -4.7357 -0.0016 15 1 8.0073 -4.0020 0.6174 16 6 8.0537 -4.7386 -1.4474 17 6 9.3047 -5.6346 -1.3295 18 7 9.1223 -6.4851 -0.1441 19 6 10.0052 -7.3946 0.3133 20 8 9.7485 -8.0435 1.3052 21 6 11.3117 -7.6055 -0.4076 22 6 12.1229 -8.6850 0.3118 23 6 11.4922 -10.0827 0.0931 24 6 12.6631 -11.0638 0.3084 25 6 13.9550 -10.2724 0.0393 26 6 13.5242 -8.8378 -0.3295 27 6 7.8108 -6.1826 0.4574 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8907 30 1 3.6440 -3.4314 0.8893 31 1 5.4292 -5.2434 -0.0018 32 1 8.3293 -3.7301 -1.7560 33 1 7.3344 -5.1702 -2.1433 34 1 10.1938 -5.0158 -1.2085 35 1 9.4011 -6.2556 -2.2200 36 1 11.8758 -6.6729 -0.4177 37 1 11.1145 -7.9220 -1.4319 38 1 12.2075 -8.4583 1.3746 39 1 11.1022 -10.1708 -0.9209 40 1 10.7036 -10.2639 0.8233 41 1 12.5842 -11.8980 -0.3887 42 1 12.6578 -11.4322 1.3342 43 1 14.5765 -10.2568 0.9345 44 1 14.5030 -10.7225 -0.7884 45 1 14.2184 -8.1107 0.0919 46 1 13.4621 -8.7245 -1.4118 47 1 7.0551 -6.8760 0.0883 48 1 7.8720 -6.2304 1.5447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703787921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:40 Heat of formation + Delta-G solvation = -91.934024 kcal Electronic energy + Delta-G solvation = -26375.763641 eV Core-core repulsion = 22555.734601 eV Total energy + Delta-G solvation = -3820.029041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67993 -39.52303 -38.41831 -37.32781 -34.31257 -32.46714 -32.21053 -31.08193 -29.74329 -29.02936 -28.39684 -26.13831 -25.62439 -23.55981 -21.74259 -20.77287 -20.63260 -20.43448 -19.40105 -17.97980 -17.45728 -17.08537 -16.52401 -16.34056 -15.71816 -15.40945 -15.10912 -15.05498 -14.93837 -14.62171 -13.95727 -13.87881 -13.75748 -13.61007 -13.45348 -13.03961 -12.87403 -12.82360 -12.57540 -12.35303 -12.08962 -11.74862 -11.71267 -11.46572 -11.41477 -11.29512 -11.18171 -11.07269 -11.03420 -10.93655 -10.78380 -10.64827 -10.10767 -9.89001 -9.63499 -9.16323 -9.03737 -9.01511 -8.54410 -6.95576 -6.31512 -4.03851 2.30684 2.40728 2.78455 2.84869 3.27801 3.31532 3.47886 3.60408 3.93801 4.16639 4.19992 4.24434 4.30448 4.35114 4.54616 4.64019 4.68744 4.79387 4.83988 4.86513 4.90176 5.05479 5.07602 5.08141 5.19758 5.22752 5.25099 5.29762 5.32925 5.39166 5.43246 5.48986 5.53595 5.62470 5.68466 5.71893 5.74384 5.79555 5.87071 5.88246 5.96764 6.00868 6.08635 6.40686 7.11121 7.47771 7.82685 7.91433 8.37304 8.39135 9.14510 10.77702 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.045205 B = 0.001618 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.249856 B =17301.959764 C =17609.765168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.728 5.728 14 C 0.137 3.863 15 H 0.104 0.896 16 C -0.146 4.146 17 C 0.102 3.898 18 N -0.620 5.620 19 C 0.530 3.470 20 O -0.535 6.535 21 C -0.129 4.129 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.121 4.121 27 C 0.102 3.898 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.402 0.598 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.934 -20.249 -3.712 33.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.382 5.382 14 C 0.031 3.969 15 H 0.122 0.878 16 C -0.185 4.185 17 C -0.021 4.021 18 N -0.356 5.356 19 C 0.319 3.681 20 O -0.412 6.412 21 C -0.168 4.168 22 C -0.097 4.097 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.022 4.022 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 26.974 -18.990 -3.141 33.137 hybrid contribution -1.204 -0.614 -0.196 1.365 sum 25.770 -19.603 -3.336 32.550 Atomic orbital electron populations 1.69936 1.05921 1.27796 1.47953 1.24710 0.94444 0.98957 0.93146 0.86735 0.81892 0.83303 0.79921 1.19207 1.19913 1.15941 1.22312 0.88216 0.97562 1.58921 0.89360 1.84790 1.09374 0.99862 1.97443 1.23283 0.93721 1.04557 1.05964 1.20309 0.90673 0.82073 0.74851 1.90705 1.58737 1.42108 1.47442 1.45822 1.06304 1.08412 1.77696 1.21996 0.82337 0.96041 0.96543 0.87791 1.23103 0.96547 1.01006 0.97855 1.22088 0.99241 0.92838 0.87957 1.48429 1.18443 1.39380 1.29312 1.20439 0.84946 0.78181 0.84535 1.90711 1.77705 1.46585 1.26164 1.21703 0.93303 1.01371 1.00463 1.21916 0.93651 0.93865 1.00261 1.22421 0.97817 0.93704 1.01628 1.22135 0.94544 0.98145 1.01521 1.22113 0.97565 0.95323 1.01216 1.22430 0.96013 0.96867 1.00561 1.22380 0.85132 0.94838 0.99835 0.91913 0.88370 0.88314 0.76332 0.88953 0.89900 0.90841 0.90964 0.88764 0.88832 0.89654 0.92118 0.90686 0.92052 0.91900 0.91913 0.91949 0.91572 0.91496 0.90798 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.27 13.97 55.49 0.78 -25.49 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.48 27.74 -169.99 -4.71 16.76 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 10 C -0.12 -2.28 6.16 36.00 0.22 -2.06 16 11 C 0.53 8.75 7.85 -10.99 -0.09 8.66 16 12 O -0.52 -10.36 15.61 5.55 0.09 -10.27 16 13 N -0.73 -8.22 5.23 -51.61 -0.27 -8.49 16 14 C 0.14 1.37 3.33 -65.66 -0.22 1.16 16 15 H 0.10 1.24 7.73 -51.93 -0.40 0.84 16 16 C -0.15 -1.20 6.64 -24.90 -0.17 -1.37 16 17 C 0.10 0.66 6.48 -3.06 -0.02 0.64 16 18 N -0.62 -5.33 3.32 -170.39 -0.57 -5.90 16 19 C 0.53 5.11 7.68 -10.99 -0.08 5.02 16 20 O -0.54 -7.07 15.09 5.56 0.08 -6.99 16 21 C -0.13 -0.81 4.39 -27.88 -0.12 -0.94 16 22 C -0.08 -0.55 2.45 -88.64 -0.22 -0.76 16 23 C -0.12 -0.89 5.76 -25.07 -0.14 -1.03 16 24 C -0.13 -0.80 6.80 -25.61 -0.17 -0.98 16 25 C -0.12 -0.69 6.80 -25.61 -0.17 -0.86 16 26 C -0.12 -0.65 6.28 -25.09 -0.16 -0.81 16 27 C 0.10 0.91 6.53 -2.41 -0.02 0.90 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 1.66 8.14 -51.91 -0.42 1.23 16 30 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 31 H 0.40 3.44 8.52 -40.82 -0.35 3.09 16 32 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.45 7.99 -51.93 -0.41 0.04 16 38 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 39 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 40 H 0.07 0.72 7.38 -51.93 -0.38 0.33 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16 47 H 0.07 0.60 8.00 -51.93 -0.42 0.18 16 48 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -34.74 398.71 -10.00 -44.75 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.27 Total: -0.66 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.14 Total: -4.25 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.06 Total: -39.88 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.17 Total: -17.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.74 -10.00 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703787921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.187 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds