Wall clock time and date at job start Tue Mar 31 2020 23:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47555 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00199 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99772 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47519 * 59.99172 * 19 17 16 21 21 C 1.52947 * 109.47618 * 299.97798 * 19 17 16 22 22 C 1.52951 * 109.82032 * 177.01843 * 21 19 17 23 23 C 1.53182 * 109.44437 * 62.98841 * 22 21 19 24 24 C 1.53146 * 108.88287 * 303.42732 * 23 22 21 25 25 C 1.52811 * 117.75007 * 199.63535 * 24 23 22 26 26 C 1.52845 * 117.67482 * 268.51706 * 24 23 22 27 27 C 1.53152 * 115.00583 * 53.95001 * 24 23 22 28 28 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 30 30 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 31 31 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 32 32 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 33 33 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 34 34 H 1.08998 * 109.47382 * 300.00439 * 15 14 13 35 35 H 1.09005 * 109.46800 * 60.00640 * 15 14 13 36 36 H 0.97000 * 119.99478 * 0.02562 * 16 15 14 37 37 H 1.09002 * 109.41481 * 297.12399 * 21 19 17 38 38 H 1.09002 * 109.41480 * 56.91184 * 21 19 17 39 39 H 1.09000 * 109.47292 * 302.99737 * 22 21 19 40 40 H 1.08999 * 109.47851 * 182.98775 * 22 21 19 41 41 H 1.09000 * 109.56299 * 183.60740 * 23 22 21 42 42 H 1.09000 * 109.66811 * 63.31273 * 23 22 21 43 43 H 1.08998 * 117.50418 * 215.10636 * 25 24 23 44 44 H 1.09002 * 117.50121 * 0.14669 * 25 24 23 45 45 H 1.09000 * 117.50577 * 359.72938 * 26 24 23 46 46 H 1.09006 * 117.50251 * 144.74484 * 26 24 23 47 47 H 1.09001 * 109.57055 * 186.23415 * 27 24 23 48 48 H 1.08997 * 109.66992 * 65.93371 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 6 3.5026 -8.6984 -0.0204 16 7 2.9889 -10.0704 -0.0267 17 6 3.8457 -11.1108 -0.0334 18 8 5.0419 -10.9111 -0.0338 19 6 3.3171 -12.5220 -0.0405 20 1 2.7073 -12.6773 -0.9305 21 6 2.4651 -12.7538 1.2084 22 6 1.8640 -14.1597 1.1725 23 6 2.9907 -15.1970 1.2047 24 6 3.9404 -14.9338 0.0324 25 6 4.8544 -16.0746 -0.4129 26 6 3.6642 -15.6627 -1.2824 27 6 4.4905 -13.5067 -0.0472 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7316 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 3.8010 -6.1834 -0.0093 32 1 1.7235 -7.8794 0.8762 33 1 1.7203 -7.8707 -0.9037 34 1 4.1099 -8.5342 -0.9104 35 1 4.1124 -8.5426 0.8696 36 1 2.0321 -10.2300 -0.0267 37 1 3.0881 -12.6486 2.0966 38 1 1.6622 -12.0172 1.2410 39 1 1.2824 -14.2831 0.2590 40 1 1.2159 -14.3001 2.0376 41 1 2.5682 -16.1977 1.1147 42 1 3.5382 -15.1150 2.1436 43 1 5.8512 -15.8120 -0.7670 44 1 4.7805 -17.0187 0.1269 45 1 2.8074 -16.3357 -1.3145 46 1 3.8777 -15.1288 -2.2084 47 1 5.0625 -13.3867 -0.9673 48 1 5.1344 -13.3133 0.8107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720021705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:44 Heat of formation + Delta-G solvation = -101.056347 kcal Electronic energy + Delta-G solvation = -25860.720298 eV Core-core repulsion = 22040.295684 eV Total energy + Delta-G solvation = -3820.424614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40250 -40.63000 -39.62201 -36.98361 -35.79651 -34.96923 -34.58014 -32.26565 -31.51704 -29.34582 -28.27312 -27.63945 -25.10826 -23.46049 -23.38154 -22.56294 -21.93090 -21.06656 -19.86987 -19.58915 -18.19846 -17.89339 -17.09883 -17.06364 -16.88016 -16.84613 -16.41459 -16.08902 -15.84755 -15.67447 -15.34431 -15.13119 -14.71830 -14.54200 -14.37693 -14.31226 -13.90222 -13.65157 -13.47521 -13.15762 -12.93997 -12.93238 -12.82632 -12.78708 -12.58628 -12.37773 -12.11889 -12.06109 -11.82422 -11.71460 -11.50468 -11.15673 -11.07366 -10.83252 -10.73818 -10.43330 -10.27536 -10.25467 -10.13377 -8.66158 -8.34888 -6.12537 1.25016 1.41562 1.45223 1.56768 1.57571 1.58703 1.88625 2.27147 2.54514 2.87657 2.99629 3.32035 3.54008 3.62986 3.66417 3.85192 3.93652 3.99630 3.99986 4.09667 4.19346 4.23098 4.31019 4.32484 4.38311 4.47835 4.52522 4.54561 4.68282 4.80658 4.82184 4.85914 4.90986 5.05747 5.07170 5.11027 5.15682 5.20745 5.25745 5.28782 5.30395 5.38926 5.42759 5.46315 5.50726 6.20286 6.41096 6.47958 7.07014 7.17155 7.19603 8.74538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040157 B = 0.001424 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.094758 B =19662.800530 C =20071.368158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.712 5.712 14 C 0.116 3.884 15 C 0.119 3.881 16 N -0.716 5.716 17 C 0.517 3.483 18 O -0.582 6.582 19 C -0.094 4.094 20 H 0.116 0.884 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.082 4.082 24 C -0.127 4.127 25 C -0.180 4.180 26 C -0.170 4.170 27 C -0.057 4.057 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 -33.708 0.559 34.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.367 5.367 14 C -0.008 4.008 15 C -0.006 4.006 16 N -0.370 5.370 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.115 4.115 20 H 0.134 0.866 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.217 4.217 26 C -0.206 4.206 27 C -0.095 4.095 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.210 -33.813 0.560 34.578 hybrid contribution 1.755 1.444 -0.086 2.274 sum 8.964 -32.369 0.474 33.591 Atomic orbital electron populations 1.70183 1.07932 1.28548 1.48074 1.26100 0.95944 1.03243 0.93733 0.84918 0.78607 0.76434 0.78069 1.18111 1.19956 1.19941 1.23249 0.95379 0.92063 1.58773 0.89923 1.85538 1.10448 0.99176 1.97056 1.23380 1.03647 0.94263 1.06969 1.19999 0.86133 0.86538 0.75000 1.90699 1.17247 1.86026 1.49981 1.45526 1.10575 1.04749 1.75894 1.21381 0.96134 0.80066 1.03250 1.21273 0.95392 0.80681 1.03235 1.45752 1.11097 1.04959 1.75156 1.21181 0.85966 0.88007 0.74363 1.90702 1.17505 1.86765 1.51184 1.21323 0.98790 0.88982 1.02438 0.86589 1.21518 0.98754 0.98916 0.95449 1.21496 0.97318 0.92832 1.03220 1.21182 0.95319 0.99457 0.96019 1.21471 1.01871 0.92248 0.97104 1.23045 0.95468 0.99006 1.04192 1.23085 1.00100 1.03346 0.94113 1.20835 0.95555 0.91281 1.01808 0.91984 0.87099 0.87093 0.74497 0.90819 0.90871 0.90779 0.90747 0.74590 0.92264 0.89908 0.90755 0.90419 0.90804 0.91879 0.89377 0.88000 0.87785 0.89070 0.92556 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 18.72 7.85 87.66 0.69 19.41 16 12 O -0.56 -24.68 15.86 -3.04 -0.05 -24.73 16 13 N -0.71 -16.26 5.56 -463.06 -2.57 -18.83 16 14 C 0.12 2.14 5.79 86.38 0.50 2.64 16 15 C 0.12 1.81 5.79 86.38 0.50 2.31 16 16 N -0.72 -9.47 5.43 -463.06 -2.51 -11.98 16 17 C 0.52 8.91 7.15 87.66 0.63 9.53 16 18 O -0.58 -15.18 15.96 -3.04 -0.05 -15.23 16 19 C -0.09 -1.08 2.53 -11.50 -0.03 -1.11 16 20 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 21 C -0.11 -0.92 5.03 30.56 0.15 -0.77 16 22 C -0.11 -0.73 5.93 30.64 0.18 -0.55 16 23 C -0.08 -0.67 5.67 30.70 0.17 -0.50 16 24 C -0.13 -1.33 1.97 -52.20 -0.10 -1.43 16 25 C -0.18 -1.84 9.99 30.54 0.31 -1.54 16 26 C -0.17 -1.55 9.93 30.55 0.30 -1.25 16 27 C -0.06 -0.81 4.27 30.71 0.13 -0.68 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 31 H 0.42 6.94 8.47 -92.71 -0.79 6.15 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.42 3.37 7.85 -92.71 -0.73 2.64 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.48 7.47 -2.39 -0.02 0.46 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 0.87 8.14 -2.38 -0.02 0.86 16 47 H 0.06 0.93 8.09 -2.39 -0.02 0.92 16 48 H 0.06 1.01 8.01 -2.39 -0.02 0.99 16 Total: -1.00 -79.78 406.77 0.40 -79.38 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.55 Total: 18.06 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.98 Total: -7.51 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -4.80 Total: -86.02 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.10 Total: -39.95 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -79.78 0.40 -79.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.675 kcal (2) G-P(sol) polarization free energy of solvation -79.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds