Wall clock time and date at job start Tue Mar 31 2020 23:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47405 * 269.99868 * 3 2 1 5 5 H 1.48503 * 109.46936 * 30.00281 * 3 2 1 6 6 H 1.48506 * 109.47119 * 149.99906 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.47364 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99750 * 180.02562 * 16 15 14 18 18 O 1.21276 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99618 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.47579 * 300.00523 * 19 17 16 21 21 C 1.52954 * 109.47537 * 60.01891 * 19 17 16 22 22 C 1.52948 * 109.81889 * 182.98011 * 21 19 17 23 23 C 1.53173 * 109.44904 * 297.01559 * 22 21 19 24 24 C 1.53147 * 108.88680 * 56.57017 * 23 22 21 25 25 C 1.52848 * 117.67298 * 91.48171 * 24 23 22 26 26 C 1.52804 * 117.75629 * 160.35779 * 24 23 22 27 27 C 1.53148 * 115.00717 * 306.06082 * 24 23 22 28 28 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 30 30 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 31 31 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 33 33 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 34 34 H 1.08992 * 109.47346 * 300.00533 * 15 14 13 35 35 H 1.09004 * 109.46785 * 60.00155 * 15 14 13 36 36 H 0.97003 * 119.99532 * 0.02562 * 16 15 14 37 37 H 1.08993 * 109.41159 * 303.08670 * 21 19 17 38 38 H 1.08997 * 109.40841 * 62.87522 * 21 19 17 39 39 H 1.09002 * 109.47076 * 177.01837 * 22 21 19 40 40 H 1.09005 * 109.47793 * 57.00837 * 22 21 19 41 41 H 1.08996 * 109.56847 * 296.74621 * 23 22 21 42 42 H 1.09001 * 109.56806 * 176.39204 * 23 22 21 43 43 H 1.09008 * 117.50574 * 215.23134 * 25 24 23 44 44 H 1.08998 * 117.50524 * 0.27965 * 25 24 23 45 45 H 1.09006 * 117.49998 * 359.86708 * 26 24 23 46 46 H 1.08998 * 117.50127 * 144.89246 * 26 24 23 47 47 H 1.09007 * 109.56861 * 294.12095 * 27 24 23 48 48 H 1.09003 * 109.66954 * 173.81990 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 6 3.5026 -8.6985 -0.0018 16 7 2.9889 -10.0705 -0.0024 17 6 3.8458 -11.1108 -0.0019 18 8 5.0420 -10.9112 -0.0014 19 6 3.3173 -12.5221 -0.0019 20 1 2.7082 -12.6821 0.8878 21 6 2.4642 -12.7472 -1.2513 22 6 1.8632 -14.1534 -1.2224 23 6 2.9898 -15.1904 -1.2610 24 6 3.9405 -14.9334 -0.0882 25 6 3.6654 -15.6694 1.2230 26 6 4.8547 -16.0765 0.3504 27 6 4.4906 -13.5068 -0.0013 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7312 -0.8905 30 1 3.1245 -3.7312 0.8895 31 1 3.8010 -6.1834 -0.0004 32 1 1.7210 -7.8755 0.8873 33 1 1.7228 -7.8747 -0.8927 34 1 4.1118 -8.5379 -0.8912 35 1 4.1106 -8.5390 0.8887 36 1 2.0321 -10.2301 -0.0031 37 1 1.6613 -12.0106 -1.2792 38 1 3.0864 -12.6373 -2.1394 39 1 1.2144 -14.2890 -2.0878 40 1 1.2823 -14.2817 -0.3090 41 1 3.5360 -15.1013 -2.2000 42 1 2.5674 -16.1916 -1.1760 43 1 3.8801 -15.1406 2.1517 44 1 2.8087 -16.3426 1.2522 45 1 4.7805 -17.0178 -0.1944 46 1 5.8519 -15.8158 0.7050 47 1 5.1327 -13.3102 -0.8600 48 1 5.0646 -13.3903 0.9180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720021706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:48 Heat of formation + Delta-G solvation = -76.582648 kcal Electronic energy + Delta-G solvation = -25859.762216 eV Core-core repulsion = 22040.398861 eV Total energy + Delta-G solvation = -3819.363355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.75748 -39.36753 -38.95088 -36.00864 -35.30408 -33.93743 -32.44545 -31.71186 -30.27186 -28.34914 -27.66090 -25.50959 -24.42137 -22.98693 -22.67705 -22.10313 -20.78310 -20.20608 -19.13211 -17.96930 -17.38079 -16.68499 -16.24047 -16.06597 -15.82798 -15.51306 -15.44382 -15.06025 -14.81592 -14.71071 -14.40649 -14.00294 -13.82572 -13.69599 -13.32291 -13.20220 -13.03772 -12.58695 -12.39472 -12.38018 -12.05085 -11.95431 -11.69509 -11.65616 -11.59545 -11.41229 -11.07507 -11.03980 -11.00241 -10.77925 -10.40027 -10.13166 -9.96120 -9.83611 -9.50338 -9.46701 -9.09420 -9.01279 -8.26685 -6.52442 -6.23336 -3.94274 2.29540 2.54229 3.01616 3.10842 3.21707 3.27647 3.29856 3.35339 3.73684 4.07704 4.13011 4.18855 4.27781 4.37929 4.43757 4.54168 4.61719 4.69127 4.77871 4.80611 4.89437 5.01523 5.09320 5.10251 5.12086 5.18755 5.22591 5.35246 5.46812 5.47326 5.48707 5.55515 5.60628 5.61068 5.66934 5.70195 5.72075 5.73940 5.85970 5.89644 5.90211 6.01836 6.11150 6.47284 7.08841 7.57633 7.59523 7.85864 8.33709 8.51573 9.22173 10.84115 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040154 B = 0.001424 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.147514 B =19662.374299 C =20070.177123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.111 3.889 15 C 0.108 3.892 16 N -0.727 5.727 17 C 0.518 3.482 18 O -0.538 6.538 19 C -0.102 4.102 20 H 0.099 0.901 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.083 4.083 24 C -0.124 4.124 25 C -0.175 4.175 26 C -0.174 4.174 27 C -0.059 4.059 28 H 0.269 0.731 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -32.836 -0.695 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.393 5.393 14 C -0.014 4.014 15 C -0.016 4.016 16 N -0.380 5.380 17 C 0.305 3.695 18 O -0.414 6.414 19 C -0.123 4.123 20 H 0.117 0.883 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.212 4.212 26 C -0.211 4.211 27 C -0.097 4.097 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.301 -32.899 -0.690 33.504 hybrid contribution 1.967 1.306 0.078 2.362 sum 8.268 -31.592 -0.611 32.662 Atomic orbital electron populations 1.70011 1.05963 1.27491 1.46830 1.24987 0.95023 0.99034 0.94478 0.86165 0.79419 0.81531 0.78368 1.20254 1.20736 1.19682 1.22871 0.94937 0.91609 1.59033 0.90874 1.85389 1.04854 0.96371 1.96741 1.23531 1.06676 0.95094 1.05112 1.20329 0.86431 0.86230 0.74967 1.90707 1.15342 1.85559 1.47383 1.45812 1.10255 1.04884 1.78301 1.21319 0.95562 0.81391 1.03105 1.21454 0.96307 0.80583 1.03265 1.45843 1.10421 1.05647 1.76063 1.20702 0.86511 0.86902 0.75413 1.90717 1.15595 1.86104 1.49013 1.21328 0.98898 0.91121 1.00979 0.88277 1.21511 0.98816 0.97793 0.96774 1.21505 0.97503 0.93812 1.02411 1.21167 0.95371 0.98732 0.96759 1.21495 1.01446 0.93144 0.96317 1.23045 0.99999 1.03581 0.94581 1.22982 0.95573 0.98716 1.03837 1.20919 0.95498 0.89876 1.03412 0.92162 0.89061 0.89053 0.76481 0.90960 0.90964 0.90679 0.90702 0.76162 0.91288 0.91185 0.91338 0.91514 0.91356 0.91705 0.88849 0.88876 0.88832 0.88756 0.90591 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.60 7.85 -10.99 -0.09 9.51 16 12 O -0.52 -11.32 15.86 5.56 0.09 -11.24 16 13 N -0.74 -9.18 5.56 -60.29 -0.33 -9.52 16 14 C 0.11 1.14 5.79 -4.04 -0.02 1.11 16 15 C 0.11 0.93 5.79 -4.04 -0.02 0.90 16 16 N -0.73 -5.43 5.43 -60.30 -0.33 -5.76 16 17 C 0.52 4.70 7.15 -10.99 -0.08 4.62 16 18 O -0.54 -7.02 15.96 5.56 0.09 -6.93 16 19 C -0.10 -0.65 2.53 -91.70 -0.23 -0.88 16 20 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.11 -0.57 5.03 -26.78 -0.13 -0.70 16 22 C -0.11 -0.50 5.93 -26.67 -0.16 -0.66 16 23 C -0.08 -0.40 5.67 -26.57 -0.15 -0.55 16 24 C -0.12 -0.71 1.97 -154.54 -0.31 -1.01 16 25 C -0.18 -0.92 9.93 -26.80 -0.27 -1.19 16 26 C -0.17 -0.95 9.99 -26.82 -0.27 -1.22 16 27 C -0.06 -0.42 4.27 -26.56 -0.11 -0.54 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 31 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 2.10 7.85 -40.82 -0.32 1.78 16 37 H 0.07 0.29 7.47 -51.93 -0.39 -0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 43 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.64 8.02 -51.92 -0.42 0.23 16 48 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -35.85 406.77 -10.47 -46.32 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.20 Total: 0.09 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.42 Total: -6.28 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.07 Total: -40.55 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.17 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.85 -10.47 -46.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.261 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds