Wall clock time and date at job start Tue Mar 31 2020 23:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48497 * 109.47322 * 270.00634 * 3 2 1 5 5 H 1.48500 * 109.46981 * 30.00461 * 3 2 1 6 6 H 1.48499 * 109.47004 * 150.00101 * 3 2 1 7 7 C 1.38799 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00028 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47418 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00330 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00710 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47791 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.46680 * 295.00176 * 15 14 13 17 17 N 1.46501 * 109.47398 * 54.99526 * 15 14 13 18 18 C 1.34775 * 120.00606 * 205.00484 * 17 15 14 19 19 O 1.21280 * 119.99487 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00203 * 180.02562 * 18 17 15 21 21 C 1.54894 * 110.48422 * 63.24037 * 20 18 17 22 22 C 1.55238 * 102.58338 * 156.67616 * 21 20 18 23 23 C 1.54266 * 104.23333 * 322.08174 * 22 21 20 24 24 C 1.53869 * 106.59800 * 23.61579 * 23 22 21 25 25 C 1.52999 * 109.47673 * 175.00022 * 15 14 13 26 26 C 1.52999 * 117.49931 * 248.74908 * 25 15 14 27 27 C 1.52994 * 117.50354 * 180.08501 * 25 15 14 28 28 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46975 * 59.99459 * 10 9 7 30 30 H 1.09000 * 109.46525 * 300.00277 * 10 9 7 31 31 H 0.97007 * 119.99781 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.46950 * 59.99585 * 14 13 11 33 33 H 1.09000 * 109.46681 * 300.00031 * 14 13 11 34 34 H 0.97005 * 119.99133 * 25.00609 * 17 15 14 35 35 H 1.09002 * 110.43350 * 300.69816 * 20 18 17 36 36 H 1.08996 * 110.75388 * 275.05970 * 21 20 18 37 37 H 1.08993 * 110.76071 * 38.44196 * 21 20 18 38 38 H 1.09005 * 110.46917 * 203.39204 * 22 21 20 39 39 H 1.09007 * 110.58541 * 80.83124 * 22 21 20 40 40 H 1.08999 * 110.03060 * 264.32313 * 23 22 21 41 41 H 1.09006 * 110.06829 * 142.91691 * 23 22 21 42 42 H 1.09001 * 110.02983 * 240.71432 * 24 23 22 43 43 H 1.08995 * 110.03881 * 119.28625 * 24 23 22 44 44 H 1.09007 * 115.54746 * 34.41364 * 25 15 14 45 45 H 1.08996 * 117.49852 * 359.97438 * 26 25 15 46 46 H 1.08995 * 117.50107 * 145.01756 * 26 25 15 47 47 H 1.08997 * 117.50389 * 214.97783 * 27 25 15 48 48 H 1.09001 * 117.49676 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4945 -0.0001 14 6 7.4908 -4.7357 -0.0006 15 6 7.7566 -6.2423 -0.0002 16 1 7.3923 -6.6752 0.9315 17 7 7.0607 -6.8613 -1.1311 18 6 6.7153 -8.1630 -1.0792 19 8 6.9810 -8.8221 -0.0964 20 6 6.0000 -8.7997 -2.2428 21 6 6.8971 -8.7829 -3.5054 22 6 6.3129 -9.9465 -4.3508 23 6 5.9520 -11.0270 -3.3107 24 6 5.7530 -10.2979 -1.9704 25 6 9.2603 -6.4951 -0.1264 26 6 9.7652 -7.1165 -1.4302 27 6 9.7328 -7.9501 -0.1467 28 1 -0.4850 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8906 30 1 3.6441 -3.4312 0.8893 31 1 5.4292 -5.2434 0.0007 32 1 7.9342 -4.2879 0.8888 33 1 7.9333 -4.2893 -0.8911 34 1 6.8487 -6.3341 -1.9173 35 1 5.0580 -8.2869 -2.4372 36 1 6.8034 -7.8338 -4.0332 37 1 7.9366 -8.9796 -3.2435 38 1 7.0607 -10.3235 -5.0487 39 1 5.4218 -9.6206 -4.8874 40 1 6.7637 -11.7496 -3.2259 41 1 5.0310 -11.5328 -3.6009 42 1 6.4682 -10.6665 -1.2350 43 1 4.7354 -10.4491 -1.6105 44 1 9.9027 -5.7641 0.3647 45 1 9.0261 -7.3455 -2.1978 46 1 10.7399 -6.7947 -1.7966 47 1 10.6863 -8.1764 0.3305 48 1 8.9724 -8.7274 -0.0707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737374853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:55 Heat of formation + Delta-G solvation = -65.565277 kcal Electronic energy + Delta-G solvation = -27327.459256 eV Core-core repulsion = 23508.573650 eV Total energy + Delta-G solvation = -3818.885606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96447 -39.35760 -38.26615 -36.99764 -35.22360 -33.62097 -32.46180 -30.88116 -29.59115 -29.06308 -28.18631 -25.64590 -23.75938 -22.91183 -22.49362 -21.03413 -20.66767 -20.15955 -19.95706 -18.06956 -17.73580 -16.86590 -16.65287 -16.18718 -16.00972 -15.90964 -15.26436 -15.04251 -14.89873 -14.49563 -14.24998 -13.82309 -13.75144 -13.58100 -13.29088 -13.01648 -12.82073 -12.54643 -12.36082 -12.12595 -11.93493 -11.71027 -11.65920 -11.53649 -11.50944 -11.29222 -11.19960 -11.03108 -10.79913 -10.71485 -10.63463 -10.30201 -10.00113 -9.88330 -9.61177 -9.38482 -9.10033 -9.01616 -8.53465 -6.94907 -6.31234 -4.03342 2.27123 2.67047 2.76790 2.91131 3.24492 3.31269 3.48380 3.53862 3.63749 4.03994 4.12674 4.25072 4.30786 4.34244 4.52850 4.67684 4.70509 4.72632 4.89506 4.94881 4.97160 5.03255 5.07795 5.08443 5.12373 5.16295 5.23956 5.24607 5.38268 5.43673 5.46166 5.54280 5.63943 5.66843 5.68934 5.72022 5.75986 5.84415 5.89278 5.96813 5.96991 6.05091 6.13792 6.40919 7.11983 7.50584 7.88028 7.91794 8.39224 8.40908 9.14830 10.77999 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.002388 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.584013 B =11721.434443 C =13051.781361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.117 3.883 15 C 0.165 3.835 16 H 0.100 0.900 17 N -0.725 5.725 18 C 0.523 3.477 19 O -0.532 6.532 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.168 4.168 26 C -0.176 4.176 27 C -0.181 4.181 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.168 -22.088 -6.848 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.007 4.007 15 C 0.060 3.940 16 H 0.117 0.883 17 N -0.377 5.377 18 C 0.310 3.690 19 O -0.408 6.408 20 C -0.138 4.138 21 C -0.153 4.153 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.187 4.187 26 C -0.213 4.213 27 C -0.218 4.218 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.472 -20.885 -6.119 28.546 hybrid contribution -1.186 -0.313 -0.378 1.283 sum 17.287 -21.198 -6.497 28.114 Atomic orbital electron populations 1.69939 1.05920 1.27796 1.48010 1.24720 0.94456 0.98983 0.93173 0.86732 0.81899 0.83274 0.79925 1.19207 1.19926 1.15917 1.22309 0.88245 0.97532 1.58843 0.89395 1.84791 1.09315 0.99915 1.97429 1.23275 0.93921 1.04489 1.05809 1.20284 0.90629 0.82162 0.75198 1.90711 1.58757 1.42153 1.47560 1.45944 1.07168 1.08207 1.77928 1.21532 0.82145 0.93385 1.03665 1.20724 0.90366 0.92008 0.90860 0.88257 1.46155 1.59809 1.11132 1.20606 1.20598 0.78244 0.81566 0.88576 1.90640 1.54310 1.62197 1.33687 1.22221 0.99883 0.98070 0.93647 1.22585 0.99003 0.99512 0.94218 1.22406 1.00857 0.95304 0.97534 1.22150 1.01593 0.97984 0.94580 1.22065 1.02904 0.91973 0.97989 1.22595 0.95316 0.97799 1.03038 1.22969 1.02294 1.04591 0.91452 1.23342 1.03403 0.94437 1.00614 0.91915 0.88535 0.88464 0.76591 0.89912 0.90720 0.76073 0.87875 0.90728 0.90877 0.91383 0.91203 0.91728 0.91634 0.89853 0.91374 0.86834 0.88729 0.89113 0.89324 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.59 27.74 -169.99 -4.71 16.87 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 7 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 11 C 0.53 8.88 7.85 -10.99 -0.09 8.80 16 12 O -0.52 -10.65 15.86 5.55 0.09 -10.56 16 13 N -0.74 -8.50 5.39 -60.30 -0.32 -8.82 16 14 C 0.12 1.14 5.22 -4.04 -0.02 1.12 16 15 C 0.17 1.36 2.59 -67.93 -0.18 1.18 16 16 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 17 N -0.72 -5.13 3.02 -53.81 -0.16 -5.29 16 18 C 0.52 4.41 5.98 -10.99 -0.07 4.34 16 19 O -0.53 -6.22 12.47 5.56 0.07 -6.15 16 20 C -0.12 -0.77 3.24 -90.11 -0.29 -1.06 16 21 C -0.12 -0.62 6.29 -24.55 -0.15 -0.77 16 22 C -0.12 -0.64 6.84 -24.88 -0.17 -0.81 16 23 C -0.13 -0.73 6.80 -25.62 -0.17 -0.90 16 24 C -0.11 -0.80 6.17 -25.62 -0.16 -0.96 16 25 C -0.17 -1.33 5.70 -90.62 -0.52 -1.85 16 26 C -0.18 -1.31 9.74 -26.69 -0.26 -1.57 16 27 C -0.18 -1.56 9.83 -26.70 -0.26 -1.83 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.40 3.83 8.14 -40.82 -0.33 3.50 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 2.36 8.60 -40.82 -0.35 2.01 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 7.40 -51.93 -0.38 0.05 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.75 6.88 -51.93 -0.36 0.39 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.11 0.84 8.11 -51.93 -0.42 0.41 16 45 H 0.09 0.67 5.98 -51.93 -0.31 0.36 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.12 1.24 5.01 -51.93 -0.26 0.98 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -34.02 395.77 -10.08 -44.11 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.88 Total: 3.25 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.90 Total: -8.26 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.29 Total: -39.72 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.16 Total: -16.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.02 -10.08 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737374853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.457 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds