Wall clock time and date at job start Tue Mar 31 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48497 * 109.47322 * 270.00634 * 3 2 1 5 5 H 1.48500 * 109.46981 * 30.00461 * 3 2 1 6 6 H 1.48499 * 109.47004 * 150.00101 * 3 2 1 7 7 C 1.38799 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00134 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00028 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47418 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00330 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00710 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47791 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.46680 * 295.00176 * 15 14 13 17 17 N 1.46501 * 109.47398 * 54.99526 * 15 14 13 18 18 C 1.34775 * 120.00606 * 205.00484 * 17 15 14 19 19 O 1.21280 * 119.99487 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00203 * 180.02562 * 18 17 15 21 21 C 1.54894 * 110.48422 * 63.24037 * 20 18 17 22 22 C 1.55238 * 102.58338 * 156.67616 * 21 20 18 23 23 C 1.54266 * 104.23333 * 322.08174 * 22 21 20 24 24 C 1.53869 * 106.59800 * 23.61579 * 23 22 21 25 25 C 1.52999 * 109.47673 * 175.00022 * 15 14 13 26 26 C 1.52999 * 117.49931 * 248.74908 * 25 15 14 27 27 C 1.52994 * 117.50354 * 180.08501 * 25 15 14 28 28 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46975 * 59.99459 * 10 9 7 30 30 H 1.09000 * 109.46525 * 300.00277 * 10 9 7 31 31 H 0.97007 * 119.99781 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.46950 * 59.99585 * 14 13 11 33 33 H 1.09000 * 109.46681 * 300.00031 * 14 13 11 34 34 H 0.97005 * 119.99133 * 25.00609 * 17 15 14 35 35 H 1.09002 * 110.43350 * 300.69816 * 20 18 17 36 36 H 1.08996 * 110.75388 * 275.05970 * 21 20 18 37 37 H 1.08993 * 110.76071 * 38.44196 * 21 20 18 38 38 H 1.09005 * 110.46917 * 203.39204 * 22 21 20 39 39 H 1.09007 * 110.58541 * 80.83124 * 22 21 20 40 40 H 1.08999 * 110.03060 * 264.32313 * 23 22 21 41 41 H 1.09006 * 110.06829 * 142.91691 * 23 22 21 42 42 H 1.09001 * 110.02983 * 240.71432 * 24 23 22 43 43 H 1.08995 * 110.03881 * 119.28625 * 24 23 22 44 44 H 1.09007 * 115.54746 * 34.41364 * 25 15 14 45 45 H 1.08996 * 117.49852 * 359.97438 * 26 25 15 46 46 H 1.08995 * 117.50107 * 145.01756 * 26 25 15 47 47 H 1.08997 * 117.50389 * 214.97783 * 27 25 15 48 48 H 1.09001 * 117.49676 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4945 -0.0001 14 6 7.4908 -4.7357 -0.0006 15 6 7.7566 -6.2423 -0.0002 16 1 7.3923 -6.6752 0.9315 17 7 7.0607 -6.8613 -1.1311 18 6 6.7153 -8.1630 -1.0792 19 8 6.9810 -8.8221 -0.0964 20 6 6.0000 -8.7997 -2.2428 21 6 6.8971 -8.7829 -3.5054 22 6 6.3129 -9.9465 -4.3508 23 6 5.9520 -11.0270 -3.3107 24 6 5.7530 -10.2979 -1.9704 25 6 9.2603 -6.4951 -0.1264 26 6 9.7652 -7.1165 -1.4302 27 6 9.7328 -7.9501 -0.1467 28 1 -0.4850 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8906 30 1 3.6441 -3.4312 0.8893 31 1 5.4292 -5.2434 0.0007 32 1 7.9342 -4.2879 0.8888 33 1 7.9333 -4.2893 -0.8911 34 1 6.8487 -6.3341 -1.9173 35 1 5.0580 -8.2869 -2.4372 36 1 6.8034 -7.8338 -4.0332 37 1 7.9366 -8.9796 -3.2435 38 1 7.0607 -10.3235 -5.0487 39 1 5.4218 -9.6206 -4.8874 40 1 6.7637 -11.7496 -3.2259 41 1 5.0310 -11.5328 -3.6009 42 1 6.4682 -10.6665 -1.2350 43 1 4.7354 -10.4491 -1.6105 44 1 9.9027 -5.7641 0.3647 45 1 9.0261 -7.3455 -2.1978 46 1 10.7399 -6.7947 -1.7966 47 1 10.6863 -8.1764 0.3305 48 1 8.9724 -8.7274 -0.0707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737374853.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:54 Heat of formation + Delta-G solvation = -87.327148 kcal Electronic energy + Delta-G solvation = -27328.402921 eV Core-core repulsion = 23508.573650 eV Total energy + Delta-G solvation = -3819.829271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67445 -40.57058 -38.94037 -37.64169 -36.16675 -34.67098 -34.49611 -31.93657 -30.45993 -29.57256 -29.07267 -27.84313 -24.61465 -23.51662 -23.15996 -21.87834 -21.39409 -20.93518 -20.61703 -19.88181 -18.48442 -17.99343 -17.58354 -17.13049 -17.10609 -16.89607 -16.57521 -16.37103 -15.83235 -15.53921 -15.19240 -14.98296 -14.82193 -14.58554 -14.36989 -14.25967 -13.86965 -13.47283 -13.34093 -13.10077 -13.04870 -12.97475 -12.75235 -12.63878 -12.32158 -12.16333 -12.04748 -11.96555 -11.86790 -11.65860 -11.35999 -11.28949 -11.16520 -11.07821 -10.91443 -10.69249 -10.53068 -10.19699 -10.08007 -8.98660 -8.51116 -6.21706 0.99288 1.32043 1.47152 1.55423 1.55627 1.61337 2.06191 2.21636 2.26235 2.71453 2.87277 2.91701 3.49540 3.54649 3.64522 3.77615 3.83109 3.94519 4.03034 4.19659 4.20043 4.24662 4.28656 4.46629 4.47797 4.49557 4.53323 4.59134 4.64671 4.68452 4.77898 4.85515 4.88394 4.96935 5.00622 5.10678 5.18909 5.25517 5.29473 5.32797 5.34100 5.38846 5.48664 5.49770 5.71092 6.12099 6.39087 6.50953 6.94134 7.15087 7.23981 8.61308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.002388 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.584013 B =11721.434443 C =13051.781361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.172 6.172 10 C -0.113 4.113 11 C 0.539 3.461 12 O -0.558 6.558 13 N -0.712 5.712 14 C 0.122 3.878 15 C 0.177 3.823 16 H 0.086 0.914 17 N -0.715 5.715 18 C 0.524 3.476 19 O -0.566 6.566 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.168 4.168 26 C -0.165 4.165 27 C -0.192 4.192 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.413 0.587 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.499 -22.237 -8.031 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.054 5.946 10 C -0.264 4.264 11 C 0.324 3.676 12 O -0.436 6.436 13 N -0.366 5.366 14 C -0.002 4.002 15 C 0.072 3.928 16 H 0.104 0.896 17 N -0.368 5.368 18 C 0.312 3.688 19 O -0.445 6.445 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.151 4.151 25 C -0.188 4.188 26 C -0.202 4.202 27 C -0.228 4.228 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.249 0.751 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.799 -21.076 -7.320 29.829 hybrid contribution -1.571 -0.479 0.010 1.643 sum 18.228 -21.555 -7.310 29.160 Atomic orbital electron populations 1.70021 1.07354 1.29022 1.49212 1.25583 0.95272 1.02321 0.92927 0.85858 0.80674 0.79534 0.80260 1.18565 1.18544 1.15976 1.22465 0.90369 0.96624 1.58154 0.92019 1.84690 1.06256 1.06061 1.97579 1.23273 0.96025 0.99681 1.07407 1.19863 0.89290 0.83186 0.75235 1.90706 1.59195 1.43682 1.50000 1.45684 1.08460 1.06798 1.75640 1.21611 0.80431 0.94266 1.03872 1.20505 0.90858 0.90739 0.90739 0.89624 1.46057 1.59268 1.10850 1.20581 1.20917 0.77767 0.81580 0.88525 1.90641 1.55711 1.63021 1.35163 1.22256 1.00508 0.97406 0.93370 1.22583 0.98280 1.00440 0.93537 1.22414 1.01336 0.94830 0.97322 1.22145 1.01849 0.98176 0.94037 1.22045 1.02033 0.92792 0.98259 1.22612 0.94977 0.97527 1.03690 1.23036 1.02898 1.03267 0.91021 1.23263 1.03157 0.94309 1.02116 0.91391 0.86630 0.87240 0.75087 0.90163 0.90122 0.74928 0.86535 0.89123 0.91502 0.90710 0.90532 0.91946 0.91084 0.92078 0.91654 0.85979 0.88263 0.88060 0.88846 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.97 21.65 0.30 -55.18 16 2 C 0.04 2.57 5.50 84.86 0.47 3.04 16 3 Si 0.91 44.37 27.74 68.60 1.90 46.28 16 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 7 C -0.53 -30.25 10.04 67.95 0.68 -29.56 16 8 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 10 C -0.11 -4.02 6.16 71.23 0.44 -3.58 16 11 C 0.54 16.93 7.85 87.66 0.69 17.62 16 12 O -0.56 -22.12 15.86 -3.04 -0.05 -22.17 16 13 N -0.71 -14.66 5.39 -463.09 -2.49 -17.16 16 14 C 0.12 2.10 5.22 86.38 0.45 2.55 16 15 C 0.18 2.60 2.59 44.99 0.12 2.71 16 16 H 0.09 1.57 7.58 -2.39 -0.02 1.56 16 17 N -0.71 -8.70 3.02 -442.55 -1.34 -10.04 16 18 C 0.52 8.23 5.98 87.66 0.52 8.76 16 19 O -0.57 -13.22 12.47 -3.03 -0.04 -13.26 16 20 C -0.11 -1.32 3.24 -10.46 -0.03 -1.36 16 21 C -0.11 -0.94 6.29 32.01 0.20 -0.74 16 22 C -0.12 -1.00 6.84 31.79 0.22 -0.78 16 23 C -0.12 -1.31 6.80 31.32 0.21 -1.10 16 24 C -0.11 -1.58 6.17 31.32 0.19 -1.39 16 25 C -0.17 -2.37 5.70 -10.80 -0.06 -2.44 16 26 C -0.17 -2.12 9.74 30.62 0.30 -1.82 16 27 C -0.19 -3.13 9.83 30.62 0.30 -2.83 16 28 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.12 3.70 8.14 -2.40 -0.02 3.68 16 30 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 31 H 0.41 6.74 8.14 -92.70 -0.75 5.99 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 3.63 8.60 -92.70 -0.80 2.83 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.67 7.40 -2.39 -0.02 0.65 16 38 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.06 1.13 6.88 -2.39 -0.02 1.12 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.12 1.54 8.11 -2.38 -0.02 1.52 16 45 H 0.10 1.17 5.98 -2.39 -0.01 1.16 16 46 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.10 2.06 5.01 -2.39 -0.01 2.05 16 Total: -1.00 -74.06 395.77 1.32 -72.73 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.61 Total: 19.20 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.69 Total: -10.91 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.53 Total: -82.37 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.09 Total: -35.43 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.50 kcal Total: -74.06 1.32 -72.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737374853.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.594 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds