Wall clock time and date at job start Tue Mar 31 2020 23:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47179 * 300.00159 * 3 2 1 6 6 H 1.48504 * 109.46884 * 60.00349 * 3 2 1 7 7 C 1.38805 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99710 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99728 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46991 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99885 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00190 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00370 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47128 * 180.02562 * 14 13 11 16 16 N 1.46501 * 109.46925 * 185.56059 * 15 14 13 17 17 C 1.34785 * 119.99999 * 85.56468 * 16 15 14 18 18 O 1.21274 * 119.99974 * 187.04949 * 17 16 15 19 19 C 1.50703 * 119.99798 * 7.04888 * 17 16 15 20 20 C 1.54269 * 110.03362 * 278.40423 * 19 17 16 21 21 C 1.54890 * 104.19765 * 217.10806 * 20 19 17 22 22 C 1.54898 * 102.74618 * 37.94125 * 21 20 19 23 23 C 1.53872 * 110.02782 * 161.23958 * 19 17 16 24 24 C 1.46494 * 119.99947 * 265.56707 * 16 15 14 25 25 C 1.53004 * 117.49553 * 195.93192 * 24 16 15 26 26 C 1.53000 * 117.49893 * 127.30772 * 24 16 15 27 27 H 0.96994 * 120.00126 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46878 * 60.00132 * 10 9 7 29 29 H 1.08994 * 109.46879 * 299.99930 * 10 9 7 30 30 H 0.97003 * 119.99586 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.46704 * 60.00318 * 14 13 11 32 32 H 1.08995 * 109.46970 * 300.00645 * 14 13 11 33 33 H 1.08996 * 109.47076 * 65.56102 * 15 14 13 34 34 H 1.08998 * 109.46669 * 305.55747 * 15 14 13 35 35 H 1.08996 * 110.01997 * 39.84526 * 19 17 16 36 36 H 1.09009 * 110.48304 * 335.78774 * 20 19 17 37 37 H 1.08994 * 110.48479 * 98.42489 * 20 19 17 38 38 H 1.08993 * 110.75567 * 279.63050 * 21 20 19 39 39 H 1.08994 * 110.91206 * 156.32885 * 21 20 19 40 40 H 1.08999 * 110.48363 * 203.37736 * 22 21 20 41 41 H 1.08995 * 110.48369 * 80.73486 * 22 21 20 42 42 H 1.09002 * 110.02945 * 238.56536 * 23 19 17 43 43 H 1.08999 * 110.03397 * 359.97438 * 23 19 17 44 44 H 1.08997 * 115.55142 * 341.63145 * 24 16 15 45 45 H 1.08991 * 117.49944 * 359.97438 * 25 24 16 46 46 H 1.09001 * 117.49733 * 145.02149 * 25 24 16 47 47 H 1.09008 * 117.49437 * 214.97323 * 26 24 16 48 48 H 1.08997 * 117.50105 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3304 -7.7152 0.0019 15 6 3.5025 -8.6986 0.0018 16 7 2.9929 -10.0657 -0.1308 17 6 2.7457 -10.5771 -1.3531 18 8 2.2054 -11.6575 -1.4605 19 6 3.1409 -9.8064 -2.5864 20 6 2.0745 -8.7386 -2.9066 21 6 2.0042 -8.7240 -4.4539 22 6 2.1640 -10.2212 -4.8174 23 6 3.1978 -10.7490 -3.8013 24 6 2.7518 -10.8768 1.0650 25 6 2.5846 -12.3855 0.8733 26 6 1.3713 -11.5187 1.2167 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7313 -0.8894 30 1 3.8010 -6.1835 0.0004 31 1 1.7209 -7.8756 -0.8874 32 1 1.7227 -7.8748 0.8926 33 1 4.0547 -8.6058 0.9370 34 1 4.1644 -8.4748 -0.8348 35 1 4.1109 -9.3327 -2.4356 36 1 1.1109 -9.0230 -2.4836 37 1 2.3851 -7.7643 -2.5296 38 1 2.8209 -8.1357 -4.8721 39 1 1.0416 -8.3440 -4.7960 40 1 2.5398 -10.3287 -5.8349 41 1 1.2149 -10.7449 -4.7030 42 1 4.1952 -10.7322 -4.2405 43 1 2.9400 -11.7640 -3.4988 44 1 3.2512 -10.5367 1.9722 45 1 2.6535 -12.7744 -0.1425 46 1 2.9740 -13.0383 1.6545 47 1 0.9627 -11.6014 2.2239 48 1 0.6423 -11.3373 0.4270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737875277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:37 Heat of formation + Delta-G solvation = -43.109480 kcal Electronic energy + Delta-G solvation = -27557.152113 eV Core-core repulsion = 23739.240263 eV Total energy + Delta-G solvation = -3817.911849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13310 -39.20807 -38.05720 -36.60622 -35.60104 -33.77407 -32.45698 -30.22501 -29.50159 -28.97342 -27.87093 -25.51373 -23.95116 -23.24819 -22.56369 -21.33688 -20.80754 -20.50392 -18.85597 -17.97170 -17.53686 -17.00023 -16.30896 -16.12198 -15.78143 -15.53763 -15.33460 -14.94714 -14.83009 -14.20358 -14.06918 -14.00474 -13.77180 -13.62253 -13.28594 -13.12694 -12.67394 -12.58393 -12.36895 -12.10833 -11.76069 -11.57645 -11.46330 -11.37498 -11.30364 -11.10194 -11.07424 -11.05026 -10.99200 -10.78940 -10.75550 -10.60443 -9.84123 -9.66829 -9.51294 -9.10897 -8.98130 -8.76744 -8.26634 -6.53425 -6.24635 -3.95422 2.18545 2.37518 3.02886 3.03992 3.19435 3.26571 3.30929 3.61011 3.73152 4.05355 4.17365 4.26832 4.31107 4.39980 4.55940 4.62332 4.72619 4.83226 4.86300 4.93228 5.08688 5.10753 5.11553 5.17457 5.22215 5.24575 5.30731 5.41081 5.53314 5.54506 5.57056 5.60256 5.70864 5.75353 5.81482 5.84112 5.86110 5.92438 6.02654 6.08673 6.09967 6.10288 6.38595 6.47249 6.97271 7.56682 7.59341 7.84254 8.32423 8.53359 9.20891 10.82833 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.002322 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.985364 B =12056.029168 C =13109.415609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.738 5.738 14 C 0.091 3.909 15 C 0.101 3.899 16 N -0.582 5.582 17 C 0.524 3.476 18 O -0.526 6.526 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.115 4.115 24 C 0.066 3.934 25 C -0.190 4.190 26 C -0.184 4.184 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.398 -23.012 -3.151 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.394 5.394 14 C -0.034 4.034 15 C -0.022 4.022 16 N -0.313 5.313 17 C 0.314 3.686 18 O -0.403 6.403 19 C -0.136 4.136 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.038 4.038 25 C -0.228 4.228 26 C -0.223 4.223 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.232 0.768 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.944 -23.821 -3.205 25.646 hybrid contribution 2.445 1.538 0.266 2.900 sum 11.389 -22.283 -2.939 25.197 Atomic orbital electron populations 1.70023 1.05959 1.27389 1.46872 1.25001 0.95029 0.99064 0.94531 0.86115 0.79565 0.81876 0.77922 1.19617 1.20555 1.20567 1.22899 0.94916 0.91602 1.58913 0.90867 1.85439 1.04842 0.96375 1.96719 1.23527 1.06639 0.95235 1.04972 1.20318 0.86493 0.86200 0.75124 1.90722 1.15363 1.85517 1.47111 1.45861 1.09980 1.05097 1.78443 1.21954 0.96564 0.80950 1.03935 1.21765 0.95914 0.80419 1.04133 1.47197 1.65488 1.13427 1.05176 1.20744 0.77690 0.85944 0.84220 1.90527 1.41765 1.21997 1.86038 1.22044 1.00962 0.97319 0.93254 1.22527 0.98059 0.97672 0.97130 1.22505 1.02380 0.96543 0.94683 1.22354 0.99340 0.95797 0.98551 1.22139 0.99597 0.99958 0.93581 1.21754 1.01251 0.91956 0.88812 1.23795 1.01403 0.91958 1.05616 1.23253 0.91928 1.04308 1.02796 0.92207 0.89178 0.89147 0.76803 0.90235 0.91177 0.89162 0.89384 0.88752 0.90984 0.90062 0.91107 0.90971 0.91518 0.91434 0.91491 0.89727 0.85298 0.84798 0.89258 0.88572 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 11 C 0.53 9.24 7.85 -10.99 -0.09 9.15 16 12 O -0.51 -11.23 15.86 5.56 0.09 -11.14 16 13 N -0.74 -8.40 5.56 -60.29 -0.33 -8.74 16 14 C 0.09 0.95 5.39 -4.04 -0.02 0.93 16 15 C 0.10 0.70 5.30 -4.04 -0.02 0.68 16 16 N -0.58 -5.09 2.85 -166.11 -0.47 -5.56 16 17 C 0.52 5.36 6.49 -10.98 -0.07 5.29 16 18 O -0.53 -6.73 11.16 5.56 0.06 -6.67 16 19 C -0.11 -0.96 2.47 -90.65 -0.22 -1.18 16 20 C -0.12 -1.08 4.39 -25.07 -0.11 -1.19 16 21 C -0.12 -1.06 6.91 -24.73 -0.17 -1.23 16 22 C -0.12 -1.00 6.83 -25.07 -0.17 -1.17 16 23 C -0.11 -0.95 6.35 -25.61 -0.16 -1.12 16 24 C 0.07 0.57 6.61 -67.93 -0.45 0.12 16 25 C -0.19 -1.76 9.63 -26.72 -0.26 -2.02 16 26 C -0.18 -1.78 9.88 -26.73 -0.26 -2.05 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 30 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 31 H 0.08 0.94 4.58 -51.93 -0.24 0.70 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.47 7.97 -51.93 -0.41 0.06 16 34 H 0.09 0.46 6.10 -51.93 -0.32 0.15 16 35 H 0.09 0.62 6.57 -51.93 -0.34 0.28 16 36 H 0.07 0.80 7.51 -51.92 -0.39 0.41 16 37 H 0.08 0.78 6.55 -51.93 -0.34 0.44 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.84 6.58 -51.93 -0.34 0.49 16 44 H 0.13 0.84 8.05 -51.93 -0.42 0.42 16 45 H 0.13 1.54 5.23 -52.09 -0.27 1.27 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 48 H 0.10 1.16 7.60 -51.93 -0.39 0.77 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.94 392.08 -10.42 -45.37 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.58 Total: 2.86 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.59 Total: -9.15 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.07 Total: -39.41 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.15 Total: -17.80 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.94 -10.42 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737875277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.260 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds