Wall clock time and date at job start Wed Apr 1 2020 00:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47064 * 299.99687 * 3 2 1 6 6 H 1.48504 * 109.47422 * 59.99621 * 3 2 1 7 7 C 1.38799 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00212 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99664 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46837 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00537 * 0.02562 * 11 10 9 13 13 N 1.34787 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46921 * 120.62572 * 5.34292 * 13 11 10 15 15 C 1.53198 * 108.77332 * 233.62791 * 14 13 11 16 16 C 1.53040 * 109.30987 * 305.36795 * 15 14 13 17 17 C 1.53037 * 109.53860 * 61.36874 * 16 15 14 18 18 C 1.46924 * 120.62703 * 185.36345 * 13 11 10 19 19 H 1.08999 * 109.58182 * 246.29758 * 18 13 11 20 20 C 1.52995 * 109.59069 * 6.58466 * 18 13 11 21 21 C 1.53002 * 109.47271 * 178.30162 * 20 18 13 22 22 N 1.46501 * 109.47272 * 174.92547 * 21 20 18 23 23 C 1.34774 * 119.99920 * 179.97438 * 22 21 20 24 24 O 1.21283 * 119.99984 * 359.97438 * 23 22 21 25 25 C 1.50694 * 119.99760 * 180.02562 * 23 22 21 26 26 C 1.53005 * 117.49702 * 248.74360 * 25 23 22 27 27 C 1.53006 * 117.49845 * 180.08621 * 25 23 22 28 28 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46658 * 60.00886 * 10 9 7 30 30 H 1.08993 * 109.47470 * 300.00009 * 10 9 7 31 31 H 1.08995 * 109.59276 * 353.41609 * 14 13 11 32 32 H 1.09004 * 109.58353 * 113.84562 * 14 13 11 33 33 H 1.08998 * 109.49563 * 65.31658 * 15 14 13 34 34 H 1.09001 * 109.49727 * 185.38511 * 15 14 13 35 35 H 1.09002 * 109.45996 * 181.38296 * 16 15 14 36 36 H 1.08997 * 109.46409 * 301.35512 * 16 15 14 37 37 H 1.09004 * 109.49680 * 178.68318 * 17 16 15 38 38 H 1.08994 * 109.50310 * 58.58022 * 17 16 15 39 39 H 1.08997 * 109.47299 * 58.29894 * 20 18 13 40 40 H 1.09001 * 109.46949 * 298.30280 * 20 18 13 41 41 H 1.09004 * 109.46691 * 54.92403 * 21 20 18 42 42 H 1.09003 * 109.46920 * 294.92786 * 21 20 18 43 43 H 0.97006 * 119.99722 * 0.02562 * 22 21 20 44 44 H 1.09001 * 115.55375 * 34.41365 * 25 23 22 45 45 H 1.08996 * 117.49779 * 0.02562 * 26 25 23 46 46 H 1.09007 * 117.49666 * 145.02191 * 26 25 23 47 47 H 1.08996 * 117.49872 * 214.97311 * 27 25 23 48 48 H 1.09000 * 117.49767 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 4.2917 -6.1206 0.1196 15 6 4.9953 -6.8261 -1.0441 16 6 4.5855 -8.3005 -1.0642 17 6 3.0738 -8.4087 -1.2768 18 6 2.3484 -7.7212 -0.1157 19 1 2.5446 -8.2603 0.8110 20 6 0.8433 -7.7032 -0.3900 21 6 0.3376 -9.1378 -0.5539 22 7 -1.1205 -9.1285 -0.6956 23 6 -1.7896 -10.2876 -0.8541 24 8 -1.1846 -11.3384 -0.8798 25 6 -3.2894 -10.2778 -1.0004 26 6 -4.1150 -10.8642 0.1466 27 6 -3.9910 -11.6263 -1.1751 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8894 31 1 4.5017 -5.0518 0.0796 32 1 4.6486 -6.5301 1.0647 33 1 4.7059 -6.3552 -1.9835 34 1 6.0751 -6.7499 -0.9164 35 1 5.1037 -8.8104 -1.8763 36 1 4.8527 -8.7647 -0.1149 37 1 2.7860 -9.4594 -1.3144 38 1 2.8025 -7.9229 -2.2140 39 1 0.6471 -7.1421 -1.3036 40 1 0.3275 -7.2293 0.4452 41 1 0.6137 -9.7228 0.3234 42 1 0.7862 -9.5819 -1.4426 43 1 -1.6043 -8.2879 -0.6762 44 1 -3.7043 -9.4220 -1.5328 45 1 -3.5732 -11.2566 1.0072 46 1 -5.0732 -10.3943 0.3686 47 1 -4.8676 -11.6575 -1.8221 48 1 -3.3676 -12.5204 -1.1846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738286882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:19 Heat of formation + Delta-G solvation = -48.081641 kcal Electronic energy + Delta-G solvation = -27245.022190 eV Core-core repulsion = 23426.894732 eV Total energy + Delta-G solvation = -3818.127459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49970 -39.91439 -37.27323 -36.57189 -35.37693 -33.13289 -32.70861 -32.45997 -29.11188 -28.93006 -25.68549 -25.34063 -24.51050 -23.28151 -22.67694 -21.42282 -21.07573 -20.14822 -19.02120 -17.73112 -17.51941 -16.56844 -16.31997 -15.76640 -15.48784 -15.39674 -14.95679 -14.83887 -14.56427 -14.48947 -14.18187 -13.99379 -13.70312 -13.55465 -13.17892 -12.89195 -12.70442 -12.60021 -12.35915 -12.08419 -11.82970 -11.79246 -11.50695 -11.12815 -11.10143 -11.04697 -10.96107 -10.88077 -10.86287 -10.78466 -10.74048 -10.70146 -9.95713 -9.82475 -9.14312 -9.10851 -8.76041 -8.48155 -8.26714 -6.53729 -6.25658 -3.95926 2.37098 2.82183 2.99091 3.05829 3.18646 3.23920 3.28384 3.55586 3.63070 4.16725 4.45846 4.51977 4.57200 4.62738 4.64441 4.67992 4.84856 4.91149 4.96882 5.05487 5.09935 5.14887 5.20358 5.24690 5.33188 5.38984 5.47682 5.51238 5.56397 5.57613 5.64780 5.68408 5.72719 5.79271 5.82986 5.85551 5.88125 5.88419 6.08433 6.10835 6.25530 6.28204 6.45422 6.74374 7.42052 7.54370 7.56728 8.12423 8.31691 8.52828 9.20209 10.81781 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.002636 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.312605 B =10619.067615 C =13010.613577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.616 5.616 14 C 0.108 3.892 15 C -0.137 4.137 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.156 3.844 19 H 0.070 0.930 20 C -0.127 4.127 21 C 0.112 3.888 22 N -0.720 5.720 23 C 0.541 3.459 24 O -0.549 6.549 25 C -0.196 4.196 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.407 0.593 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -19.882 -1.364 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.388 6.388 13 N -0.352 5.352 14 C -0.015 4.015 15 C -0.175 4.175 16 C -0.156 4.156 17 C -0.174 4.174 18 C 0.052 3.948 19 H 0.088 0.912 20 C -0.164 4.164 21 C -0.012 4.012 22 N -0.371 5.371 23 C 0.328 3.672 24 O -0.427 6.427 25 C -0.217 4.217 26 C -0.190 4.190 27 C -0.186 4.186 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.242 0.758 44 H 0.143 0.857 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.364 -20.800 -1.375 20.890 hybrid contribution 1.957 1.863 -0.076 2.703 sum 3.320 -18.936 -1.452 19.280 Atomic orbital electron populations 1.70019 1.05935 1.27353 1.46967 1.24986 0.95027 0.99026 0.94533 0.86130 0.79603 0.81915 0.77926 1.19622 1.20558 1.20554 1.22894 0.94904 0.91630 1.58821 0.90940 1.85319 1.05022 0.96373 1.96694 1.23603 1.06477 0.95641 1.04601 1.20302 0.86274 0.86062 0.74817 1.90671 1.15396 1.84441 1.48262 1.48139 1.06791 1.05545 1.74741 1.21733 0.79690 1.01879 0.98223 1.21937 1.00173 0.96013 0.99370 1.21502 0.95752 0.96347 1.02001 1.22099 0.95416 1.00924 0.98998 1.21047 0.93600 0.82224 0.97880 0.91173 1.22424 0.94335 0.93589 1.06089 1.21584 0.79619 0.98479 1.01490 1.45931 1.08250 1.09243 1.73661 1.19657 0.88320 0.83574 0.75673 1.90674 1.69842 1.31292 1.50886 1.22223 0.91690 1.00741 1.07050 1.22949 1.00804 1.02775 0.92475 1.22953 1.01762 0.94440 0.99486 0.92238 0.89429 0.89378 0.89152 0.91484 0.91282 0.90788 0.91739 0.91819 0.90638 0.91251 0.90137 0.87541 0.91941 0.91763 0.75842 0.85690 0.88293 0.87687 0.87951 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.96 4.51 36.01 0.16 -2.80 16 11 C 0.54 9.41 7.55 -10.98 -0.08 9.33 16 12 O -0.51 -10.21 11.41 5.56 0.06 -10.14 16 13 N -0.62 -8.16 2.97 -165.22 -0.49 -8.65 16 14 C 0.11 1.13 6.35 -3.71 -0.02 1.10 16 15 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 16 C -0.12 -0.97 5.88 -26.69 -0.16 -1.13 16 17 C -0.14 -1.30 4.82 -26.61 -0.13 -1.43 16 18 C 0.16 1.79 3.03 -67.60 -0.20 1.59 16 19 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.13 -1.60 3.29 -26.73 -0.09 -1.69 16 21 C 0.11 1.29 5.15 -4.04 -0.02 1.27 16 22 N -0.72 -8.20 5.56 -60.29 -0.33 -8.54 16 23 C 0.54 6.70 7.61 -10.99 -0.08 6.62 16 24 O -0.55 -8.61 16.26 5.55 0.09 -8.52 16 25 C -0.20 -1.83 6.19 -91.77 -0.57 -2.40 16 26 C -0.15 -1.22 10.24 -26.69 -0.27 -1.49 16 27 C -0.15 -1.25 10.05 -26.69 -0.27 -1.52 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.09 1.59 7.72 -51.91 -0.40 1.19 16 30 H 0.09 1.61 7.91 -51.92 -0.41 1.20 16 31 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.66 6.87 -51.93 -0.36 0.30 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.17 7.24 -51.93 -0.38 0.80 16 40 H 0.11 1.59 6.23 -51.93 -0.32 1.27 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 6.84 -51.93 -0.36 0.39 16 43 H 0.41 4.16 8.47 -40.82 -0.35 3.82 16 44 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.11 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -33.96 395.30 -10.81 -44.77 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.89 Total: 4.32 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.70 Total: -6.52 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.09 Total: -42.10 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.15 Total: -18.66 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.96 -10.81 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738286882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.311 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds