Wall clock time and date at job start Wed Apr 1 2020 00:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99985 * 2 1 4 4 H 1.48505 * 109.47424 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47064 * 299.99687 * 3 2 1 6 6 H 1.48504 * 109.47422 * 59.99621 * 3 2 1 7 7 C 1.38799 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00212 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99664 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46837 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00537 * 0.02562 * 11 10 9 13 13 N 1.34787 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46921 * 120.62572 * 5.34292 * 13 11 10 15 15 C 1.53198 * 108.77332 * 233.62791 * 14 13 11 16 16 C 1.53040 * 109.30987 * 305.36795 * 15 14 13 17 17 C 1.53037 * 109.53860 * 61.36874 * 16 15 14 18 18 C 1.46924 * 120.62703 * 185.36345 * 13 11 10 19 19 H 1.08999 * 109.58182 * 246.29758 * 18 13 11 20 20 C 1.52995 * 109.59069 * 6.58466 * 18 13 11 21 21 C 1.53002 * 109.47271 * 178.30162 * 20 18 13 22 22 N 1.46501 * 109.47272 * 174.92547 * 21 20 18 23 23 C 1.34774 * 119.99920 * 179.97438 * 22 21 20 24 24 O 1.21283 * 119.99984 * 359.97438 * 23 22 21 25 25 C 1.50694 * 119.99760 * 180.02562 * 23 22 21 26 26 C 1.53005 * 117.49702 * 248.74360 * 25 23 22 27 27 C 1.53006 * 117.49845 * 180.08621 * 25 23 22 28 28 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46658 * 60.00886 * 10 9 7 30 30 H 1.08993 * 109.47470 * 300.00009 * 10 9 7 31 31 H 1.08995 * 109.59276 * 353.41609 * 14 13 11 32 32 H 1.09004 * 109.58353 * 113.84562 * 14 13 11 33 33 H 1.08998 * 109.49563 * 65.31658 * 15 14 13 34 34 H 1.09001 * 109.49727 * 185.38511 * 15 14 13 35 35 H 1.09002 * 109.45996 * 181.38296 * 16 15 14 36 36 H 1.08997 * 109.46409 * 301.35512 * 16 15 14 37 37 H 1.09004 * 109.49680 * 178.68318 * 17 16 15 38 38 H 1.08994 * 109.50310 * 58.58022 * 17 16 15 39 39 H 1.08997 * 109.47299 * 58.29894 * 20 18 13 40 40 H 1.09001 * 109.46949 * 298.30280 * 20 18 13 41 41 H 1.09004 * 109.46691 * 54.92403 * 21 20 18 42 42 H 1.09003 * 109.46920 * 294.92786 * 21 20 18 43 43 H 0.97006 * 119.99722 * 0.02562 * 22 21 20 44 44 H 1.09001 * 115.55375 * 34.41365 * 25 23 22 45 45 H 1.08996 * 117.49779 * 0.02562 * 26 25 23 46 46 H 1.09007 * 117.49666 * 145.02191 * 26 25 23 47 47 H 1.08996 * 117.49872 * 214.97311 * 27 25 23 48 48 H 1.09000 * 117.49767 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 4.2917 -6.1206 0.1196 15 6 4.9953 -6.8261 -1.0441 16 6 4.5855 -8.3005 -1.0642 17 6 3.0738 -8.4087 -1.2768 18 6 2.3484 -7.7212 -0.1157 19 1 2.5446 -8.2603 0.8110 20 6 0.8433 -7.7032 -0.3900 21 6 0.3376 -9.1378 -0.5539 22 7 -1.1205 -9.1285 -0.6956 23 6 -1.7896 -10.2876 -0.8541 24 8 -1.1846 -11.3384 -0.8798 25 6 -3.2894 -10.2778 -1.0004 26 6 -4.1150 -10.8642 0.1466 27 6 -3.9910 -11.6263 -1.1751 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8894 31 1 4.5017 -5.0518 0.0796 32 1 4.6486 -6.5301 1.0647 33 1 4.7059 -6.3552 -1.9835 34 1 6.0751 -6.7499 -0.9164 35 1 5.1037 -8.8104 -1.8763 36 1 4.8527 -8.7647 -0.1149 37 1 2.7860 -9.4594 -1.3144 38 1 2.8025 -7.9229 -2.2140 39 1 0.6471 -7.1421 -1.3036 40 1 0.3275 -7.2293 0.4452 41 1 0.6137 -9.7228 0.3234 42 1 0.7862 -9.5819 -1.4426 43 1 -1.6043 -8.2879 -0.6762 44 1 -3.7043 -9.4220 -1.5328 45 1 -3.5732 -11.2566 1.0072 46 1 -5.0732 -10.3943 0.3686 47 1 -4.8676 -11.6575 -1.8221 48 1 -3.3676 -12.5204 -1.1846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738286882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:18 Heat of formation + Delta-G solvation = -69.499459 kcal Electronic energy + Delta-G solvation = -27245.950937 eV Core-core repulsion = 23426.894732 eV Total energy + Delta-G solvation = -3819.056205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62664 -40.89622 -38.41292 -37.35742 -36.37258 -34.58615 -34.19203 -33.63988 -30.56495 -29.83683 -27.69191 -26.41476 -25.40898 -24.18077 -23.32078 -22.40661 -22.02435 -21.04704 -20.34936 -19.41225 -18.51016 -17.75955 -17.37814 -16.88502 -16.81937 -16.66669 -16.47613 -15.90606 -15.74286 -15.36089 -15.34678 -15.02461 -14.87688 -14.54207 -14.45893 -14.19505 -13.94733 -13.54019 -13.45441 -13.28675 -13.16085 -12.93578 -12.85171 -12.60204 -12.46753 -12.38927 -11.95747 -11.92018 -11.69045 -11.62233 -11.56379 -11.51465 -11.44622 -11.15791 -10.94665 -10.25062 -10.17413 -10.05522 -9.56665 -8.64747 -8.35011 -6.11699 1.26506 1.40561 1.44057 1.45977 1.56624 1.60991 2.01683 2.21764 2.27844 2.90901 2.99317 3.26004 3.58266 3.69252 3.79316 3.84152 3.87159 3.97788 3.98368 4.07558 4.09398 4.19981 4.23541 4.27435 4.32796 4.36121 4.47563 4.57670 4.60773 4.72274 4.72409 4.83227 4.90020 4.95228 5.00981 5.05834 5.09304 5.19090 5.20563 5.24098 5.25348 5.42127 5.45301 5.46750 5.69968 6.19797 6.33840 6.48703 7.06934 7.16228 7.20465 8.74176 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.002636 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.312605 B =10619.067615 C =13010.613577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.080 0.920 9 S -0.143 6.143 10 C -0.127 4.127 11 C 0.533 3.467 12 O -0.545 6.545 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.152 3.848 19 H 0.087 0.913 20 C -0.111 4.111 21 C 0.121 3.879 22 N -0.718 5.718 23 C 0.536 3.464 24 O -0.587 6.587 25 C -0.208 4.208 26 C -0.143 4.143 27 C -0.147 4.147 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.412 0.588 44 H 0.144 0.856 45 H 0.089 0.911 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -20.444 -1.305 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.098 0.902 9 S 0.084 5.916 10 C -0.278 4.278 11 C 0.321 3.679 12 O -0.424 6.424 13 N -0.339 5.339 14 C -0.023 4.023 15 C -0.170 4.170 16 C -0.153 4.153 17 C -0.169 4.169 18 C 0.049 3.951 19 H 0.105 0.895 20 C -0.149 4.149 21 C -0.004 4.004 22 N -0.369 5.369 23 C 0.324 3.676 24 O -0.468 6.468 25 C -0.229 4.229 26 C -0.181 4.181 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.247 0.753 44 H 0.162 0.838 45 H 0.107 0.893 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.313 -21.377 -1.316 21.672 hybrid contribution 1.408 1.917 -0.083 2.380 sum 4.721 -19.460 -1.399 20.073 Atomic orbital electron populations 1.70172 1.07858 1.28496 1.48095 1.26079 0.95956 1.03174 0.93824 0.84951 0.78640 0.76566 0.78083 1.18133 1.19963 1.19937 1.23221 0.95265 0.92190 1.58670 0.90198 1.85436 1.10272 0.98878 1.96971 1.23427 1.03456 0.95122 1.05809 1.20041 0.86270 0.86230 0.75407 1.90683 1.16779 1.84777 1.50122 1.48140 1.07703 1.05217 1.72855 1.22047 0.77752 1.02259 1.00287 1.21921 1.01362 0.95976 0.97734 1.21514 0.94276 0.96135 1.03345 1.22056 0.96577 1.01047 0.97184 1.21252 0.92854 0.81316 0.99641 0.89481 1.22130 0.95350 0.93610 1.03770 1.21478 0.79827 0.97461 1.01587 1.45992 1.08350 1.09461 1.73075 1.20209 0.89659 0.82981 0.74719 1.90647 1.70902 1.32472 1.52783 1.22304 0.89696 1.02174 1.08712 1.23049 1.01205 1.02050 0.91778 1.23024 1.02013 0.93131 1.00254 0.92015 0.87961 0.88181 0.89589 0.89225 0.92626 0.88336 0.90339 0.90406 0.89427 0.92655 0.92500 0.90034 0.91759 0.91549 0.75258 0.83804 0.89288 0.85312 0.85535 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.96 13.22 21.65 0.29 -54.68 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.04 29.55 68.60 2.03 45.06 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -30.67 9.50 67.95 0.65 -30.03 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.14 -7.71 20.57 -56.49 -1.16 -8.87 16 10 C -0.13 -4.94 4.51 71.24 0.32 -4.62 16 11 C 0.53 18.84 7.55 87.66 0.66 19.51 16 12 O -0.55 -22.61 11.41 -3.03 -0.03 -22.64 16 13 N -0.60 -15.38 2.97 -795.02 -2.36 -17.74 16 14 C 0.10 1.81 6.35 86.37 0.55 2.36 16 15 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 16 C -0.12 -1.51 5.88 30.62 0.18 -1.33 16 17 C -0.13 -2.26 4.82 30.67 0.15 -2.11 16 18 C 0.15 3.32 3.03 44.98 0.14 3.46 16 19 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.11 -2.85 3.29 30.59 0.10 -2.75 16 21 C 0.12 2.78 5.15 86.38 0.44 3.22 16 22 N -0.72 -16.68 5.56 -463.05 -2.57 -19.26 16 23 C 0.54 13.39 7.61 87.66 0.67 14.05 16 24 O -0.59 -18.72 16.26 -3.04 -0.05 -18.77 16 25 C -0.21 -3.74 6.19 -11.54 -0.07 -3.81 16 26 C -0.14 -2.13 10.24 30.62 0.31 -1.81 16 27 C -0.15 -2.32 10.05 30.62 0.31 -2.01 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.10 3.65 7.72 -2.39 -0.02 3.63 16 30 H 0.10 3.62 7.91 -2.40 -0.02 3.60 16 31 H 0.09 1.67 5.93 -2.39 -0.01 1.66 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.34 6.87 -2.39 -0.02 1.32 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.74 7.24 -2.39 -0.02 1.72 16 40 H 0.08 2.55 6.23 -2.39 -0.01 2.53 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.52 6.84 -2.39 -0.02 1.50 16 43 H 0.41 8.73 8.47 -92.70 -0.79 7.95 16 44 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.09 1.74 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -76.47 395.30 1.36 -75.10 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.17 Total: 28.11 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.06 Total: -6.32 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.65 Total: -91.68 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.08 Total: -41.41 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.16 Total: -8.87 kcal Total: -76.47 1.36 -75.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738286882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.605 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds