Wall clock time and date at job start Tue Mar 31 2020 23:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48492 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47192 * 300.00669 * 3 2 1 6 6 H 1.48509 * 109.46827 * 59.99885 * 3 2 1 7 7 C 1.38793 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00611 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00220 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47186 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00055 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00056 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46997 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47020 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47001 * 180.02562 * 16 15 14 18 18 C 1.34780 * 119.99747 * 180.02562 * 17 16 15 19 19 O 1.21276 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.50693 * 119.99563 * 180.02562 * 18 17 16 21 21 H 1.09006 * 109.26765 * 60.50225 * 20 18 17 22 22 C 1.52613 * 110.08212 * 302.07850 * 20 18 17 23 23 C 1.53301 * 108.86697 * 185.23592 * 22 20 18 24 24 C 1.52875 * 108.72981 * 73.86395 * 23 22 20 25 25 C 1.52713 * 110.15610 * 305.38313 * 24 23 22 26 26 H 1.09003 * 115.38850 * 231.22360 * 25 24 23 27 27 C 1.53650 * 116.03195 * 90.20324 * 25 24 23 28 28 C 1.52074 * 120.51849 * 21.47137 * 25 24 23 29 29 H 1.09000 * 115.92844 * 210.74405 * 28 25 24 30 30 H 0.97002 * 120.00518 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47019 * 59.99847 * 10 9 7 32 32 H 1.09003 * 109.46756 * 300.00045 * 10 9 7 33 33 H 0.97004 * 119.99431 * 0.02562 * 13 11 10 34 34 H 1.09008 * 109.47062 * 60.00577 * 14 13 11 35 35 H 1.08998 * 109.47513 * 300.00645 * 14 13 11 36 36 H 1.09005 * 109.46516 * 60.00840 * 15 14 13 37 37 H 1.08989 * 109.47353 * 300.00355 * 15 14 13 38 38 H 1.09008 * 109.46974 * 60.00592 * 16 15 14 39 39 H 1.08998 * 109.47578 * 300.00674 * 16 15 14 40 40 H 0.96997 * 119.99837 * 0.02562 * 17 16 15 41 41 H 1.09001 * 110.02595 * 65.09139 * 22 20 18 42 42 H 1.08994 * 108.92377 * 304.73018 * 22 20 18 43 43 H 1.09002 * 109.62184 * 314.04398 * 23 22 20 44 44 H 1.08998 * 109.61736 * 193.68143 * 23 22 20 45 45 H 1.09003 * 109.35878 * 65.58870 * 24 23 22 46 46 H 1.09000 * 109.35885 * 185.17394 * 24 23 22 47 47 H 1.08999 * 117.53771 * 355.69354 * 27 25 24 48 48 H 1.08999 * 117.53763 * 140.94583 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2019 -0.0005 8 1 3.0902 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0020 16 6 2.9661 -10.1313 -0.0014 17 7 4.0884 -11.0730 -0.0009 18 6 3.8544 -12.4003 -0.0008 19 8 2.7148 -12.8151 -0.0017 20 6 5.0088 -13.3689 0.0003 21 1 5.6093 -13.2117 0.8963 22 6 5.9005 -13.1227 -1.2136 23 6 6.9879 -14.2025 -1.2570 24 6 6.3551 -15.5185 -1.7096 25 6 5.1718 -15.8700 -0.8105 26 1 5.1833 -16.8779 -0.3956 27 6 3.8029 -15.3335 -1.2569 28 6 4.4705 -14.7912 0.0001 29 1 4.0363 -15.1128 0.9467 30 1 -0.4851 0.8400 0.0004 31 1 3.1245 -3.7312 0.8894 32 1 3.1245 -3.7312 -0.8906 33 1 3.8011 -6.1834 -0.0015 34 1 1.7216 -7.8749 -0.8917 35 1 1.7223 -7.8753 0.8883 36 1 4.1112 -8.5384 0.8881 37 1 4.1112 -8.5383 -0.8919 38 1 2.3573 -10.2916 -0.8912 39 1 2.3577 -10.2912 0.8887 40 1 4.9999 -10.7412 -0.0006 41 1 6.3644 -12.1389 -1.1426 42 1 5.2923 -13.1792 -2.1163 43 1 7.4203 -14.3267 -0.2642 44 1 7.7665 -13.9096 -1.9613 45 1 6.0096 -15.4182 -2.7386 46 1 7.0983 -16.3140 -1.6561 47 1 3.7769 -14.6857 -2.1331 48 1 2.9394 -15.9858 -1.1273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758126372.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:59 Heat of formation + Delta-G solvation = -75.461085 kcal Electronic energy + Delta-G solvation = -25636.004922 eV Core-core repulsion = 21816.690201 eV Total energy + Delta-G solvation = -3819.314720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96440 -39.26826 -38.82779 -36.30145 -34.59128 -33.61866 -32.44190 -32.13761 -31.12021 -29.07977 -26.16262 -25.52543 -24.95997 -23.12079 -22.22786 -22.03019 -20.64648 -20.37368 -18.93687 -17.86755 -17.41311 -16.89220 -16.50007 -16.29305 -16.19965 -15.51728 -15.36312 -14.81655 -14.75971 -14.46557 -14.33197 -14.01856 -13.89314 -13.84304 -13.29030 -13.14163 -13.01814 -12.69366 -12.60105 -12.30660 -11.97827 -11.93538 -11.86978 -11.63028 -11.40190 -11.31555 -11.07999 -11.03242 -10.89232 -10.77051 -10.58222 -10.16926 -9.90443 -9.81685 -9.44077 -9.43688 -9.09121 -8.93286 -8.24347 -6.51312 -6.22844 -3.93574 2.30543 2.63557 3.04094 3.07422 3.20615 3.27327 3.31580 3.42189 3.70033 4.00432 4.15335 4.18878 4.19125 4.45715 4.51812 4.58019 4.60382 4.65294 4.68633 4.71240 4.89844 4.95228 5.08034 5.11131 5.12453 5.15750 5.20289 5.30752 5.36480 5.47133 5.47497 5.52029 5.61067 5.64126 5.64733 5.71645 5.76306 5.82900 5.84570 5.87973 5.88287 6.03220 6.11566 6.55970 7.09997 7.58588 7.66140 7.88336 8.34183 8.58358 9.22572 10.84653 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036202 B = 0.001352 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.247905 B =20704.999740 C =21267.506953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.124 3.876 15 C -0.142 4.142 16 C 0.122 3.878 17 N -0.732 5.732 18 C 0.516 3.484 19 O -0.529 6.529 20 C -0.074 4.074 21 H 0.099 0.901 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.150 4.150 26 H 0.103 0.897 27 C -0.164 4.164 28 C -0.119 4.119 29 H 0.103 0.897 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.091 -31.093 -1.486 36.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.001 4.001 15 C -0.180 4.180 16 C -0.003 4.003 17 N -0.385 5.385 18 C 0.302 3.698 19 O -0.404 6.404 20 C -0.096 4.096 21 H 0.117 0.883 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.128 4.128 25 C -0.168 4.168 26 H 0.121 0.879 27 C -0.201 4.201 28 C -0.138 4.138 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.047 -31.626 -1.490 35.055 hybrid contribution 2.793 1.559 0.089 3.200 sum 17.840 -30.068 -1.401 34.990 Atomic orbital electron populations 1.70024 1.05962 1.27372 1.46892 1.24991 0.95019 0.99038 0.94523 0.86116 0.79562 0.81884 0.77915 1.19630 1.20561 1.20555 1.22906 0.94938 0.91640 1.58905 0.90869 1.85428 1.04919 0.96362 1.96713 1.23527 1.06589 0.95350 1.04920 1.20324 0.86530 0.86297 0.75153 1.90713 1.15379 1.85593 1.47299 1.45965 1.09931 1.05400 1.78198 1.21103 0.95441 0.80577 1.02941 1.21971 0.98956 0.93619 1.03477 1.21234 0.88977 0.86880 1.03160 1.46017 1.10123 1.06000 1.76324 1.20594 0.90749 0.82594 0.75845 1.90727 1.23300 1.78104 1.48268 1.20564 0.94888 0.92974 1.01147 0.88293 1.21572 0.96798 0.99469 0.97380 1.21553 0.97233 0.94547 1.02111 1.21062 0.96018 0.97376 0.98377 1.22323 0.94077 0.97973 1.02476 0.87886 1.23005 0.95506 1.03311 0.98289 1.21355 1.03207 0.91972 0.97228 0.87913 0.92213 0.89207 0.89212 0.76842 0.91251 0.91257 0.90509 0.90511 0.90955 0.90943 0.76615 0.90980 0.91258 0.91331 0.91301 0.91559 0.91406 0.88992 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.44 -0.10 1.99 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 11 C 0.53 9.71 7.85 -10.98 -0.09 9.63 16 12 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 13 N -0.74 -9.19 5.56 -60.30 -0.33 -9.52 16 14 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 15 C -0.14 -0.91 5.44 -26.73 -0.15 -1.05 16 16 C 0.12 0.92 5.67 -4.04 -0.02 0.90 16 17 N -0.73 -4.65 5.45 -60.29 -0.33 -4.98 16 18 C 0.52 4.43 7.15 -10.99 -0.08 4.35 16 19 O -0.53 -6.81 15.66 5.56 0.09 -6.72 16 20 C -0.07 -0.44 2.51 -92.44 -0.23 -0.67 16 21 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.11 -0.50 4.85 -26.77 -0.13 -0.63 16 23 C -0.12 -0.44 5.92 -26.64 -0.16 -0.59 16 24 C -0.09 -0.40 5.84 -26.94 -0.16 -0.56 16 25 C -0.15 -0.85 6.19 -90.90 -0.56 -1.41 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 C -0.16 -1.22 9.16 -26.75 -0.24 -1.46 16 28 C -0.12 -0.83 4.71 -91.91 -0.43 -1.26 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 32 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 33 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 34 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.40 1.41 7.93 -40.82 -0.32 1.08 16 41 H 0.07 0.20 7.67 -51.93 -0.40 -0.20 16 42 H 0.07 0.39 7.12 -51.93 -0.37 0.02 16 43 H 0.07 0.24 8.06 -51.93 -0.42 -0.18 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.31 8.06 -51.93 -0.42 -0.11 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.73 7.27 -51.93 -0.38 0.35 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -36.82 404.00 -10.87 -47.69 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.12 Total: -0.77 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.85 Total: -7.19 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.07 Total: -39.88 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.82 -10.87 -47.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758126372.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.771 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds