Wall clock time and date at job start Tue Mar 31 2020 23:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48492 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47192 * 300.00669 * 3 2 1 6 6 H 1.48509 * 109.46827 * 59.99885 * 3 2 1 7 7 C 1.38793 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00611 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00220 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47186 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00055 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00056 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46997 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47020 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47001 * 180.02562 * 16 15 14 18 18 C 1.34780 * 119.99747 * 180.02562 * 17 16 15 19 19 O 1.21276 * 120.00115 * 0.02562 * 18 17 16 20 20 C 1.50693 * 119.99563 * 180.02562 * 18 17 16 21 21 H 1.09006 * 109.26765 * 60.50225 * 20 18 17 22 22 C 1.52613 * 110.08212 * 302.07850 * 20 18 17 23 23 C 1.53301 * 108.86697 * 185.23592 * 22 20 18 24 24 C 1.52875 * 108.72981 * 73.86395 * 23 22 20 25 25 C 1.52713 * 110.15610 * 305.38313 * 24 23 22 26 26 H 1.09003 * 115.38850 * 231.22360 * 25 24 23 27 27 C 1.53650 * 116.03195 * 90.20324 * 25 24 23 28 28 C 1.52074 * 120.51849 * 21.47137 * 25 24 23 29 29 H 1.09000 * 115.92844 * 210.74405 * 28 25 24 30 30 H 0.97002 * 120.00518 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47019 * 59.99847 * 10 9 7 32 32 H 1.09003 * 109.46756 * 300.00045 * 10 9 7 33 33 H 0.97004 * 119.99431 * 0.02562 * 13 11 10 34 34 H 1.09008 * 109.47062 * 60.00577 * 14 13 11 35 35 H 1.08998 * 109.47513 * 300.00645 * 14 13 11 36 36 H 1.09005 * 109.46516 * 60.00840 * 15 14 13 37 37 H 1.08989 * 109.47353 * 300.00355 * 15 14 13 38 38 H 1.09008 * 109.46974 * 60.00592 * 16 15 14 39 39 H 1.08998 * 109.47578 * 300.00674 * 16 15 14 40 40 H 0.96997 * 119.99837 * 0.02562 * 17 16 15 41 41 H 1.09001 * 110.02595 * 65.09139 * 22 20 18 42 42 H 1.08994 * 108.92377 * 304.73018 * 22 20 18 43 43 H 1.09002 * 109.62184 * 314.04398 * 23 22 20 44 44 H 1.08998 * 109.61736 * 193.68143 * 23 22 20 45 45 H 1.09003 * 109.35878 * 65.58870 * 24 23 22 46 46 H 1.09000 * 109.35885 * 185.17394 * 24 23 22 47 47 H 1.08999 * 117.53771 * 355.69354 * 27 25 24 48 48 H 1.08999 * 117.53763 * 140.94583 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2019 -0.0005 8 1 3.0902 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0020 16 6 2.9661 -10.1313 -0.0014 17 7 4.0884 -11.0730 -0.0009 18 6 3.8544 -12.4003 -0.0008 19 8 2.7148 -12.8151 -0.0017 20 6 5.0088 -13.3689 0.0003 21 1 5.6093 -13.2117 0.8963 22 6 5.9005 -13.1227 -1.2136 23 6 6.9879 -14.2025 -1.2570 24 6 6.3551 -15.5185 -1.7096 25 6 5.1718 -15.8700 -0.8105 26 1 5.1833 -16.8779 -0.3956 27 6 3.8029 -15.3335 -1.2569 28 6 4.4705 -14.7912 0.0001 29 1 4.0363 -15.1128 0.9467 30 1 -0.4851 0.8400 0.0004 31 1 3.1245 -3.7312 0.8894 32 1 3.1245 -3.7312 -0.8906 33 1 3.8011 -6.1834 -0.0015 34 1 1.7216 -7.8749 -0.8917 35 1 1.7223 -7.8753 0.8883 36 1 4.1112 -8.5384 0.8881 37 1 4.1112 -8.5383 -0.8919 38 1 2.3573 -10.2916 -0.8912 39 1 2.3577 -10.2912 0.8887 40 1 4.9999 -10.7412 -0.0006 41 1 6.3644 -12.1389 -1.1426 42 1 5.2923 -13.1792 -2.1163 43 1 7.4203 -14.3267 -0.2642 44 1 7.7665 -13.9096 -1.9613 45 1 6.0096 -15.4182 -2.7386 46 1 7.0983 -16.3140 -1.6561 47 1 3.7769 -14.6857 -2.1331 48 1 2.9394 -15.9858 -1.1273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758126372.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:58 Heat of formation + Delta-G solvation = -101.384809 kcal Electronic energy + Delta-G solvation = -25637.129059 eV Core-core repulsion = 21816.690201 eV Total energy + Delta-G solvation = -3820.438857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52687 -40.61347 -39.45747 -37.18435 -35.56132 -34.57998 -34.11851 -32.84864 -31.89224 -30.37243 -27.70356 -26.75785 -25.68207 -23.54207 -22.88152 -22.65683 -21.73206 -21.23643 -19.83099 -19.37595 -18.06932 -17.64407 -17.58605 -17.25697 -17.07380 -16.87571 -16.54598 -16.33031 -15.74528 -15.60924 -14.98799 -14.81297 -14.70127 -14.63238 -14.37467 -14.27185 -14.01223 -13.67794 -13.36560 -13.23878 -13.15201 -12.97815 -12.90758 -12.61114 -12.56955 -12.32823 -12.07761 -12.06015 -11.75034 -11.70381 -11.30352 -11.15421 -11.12436 -10.98463 -10.64808 -10.49480 -10.25908 -10.14135 -10.07846 -8.66461 -8.34176 -6.12459 1.27687 1.42250 1.48003 1.58753 1.61749 1.65590 2.02249 2.27644 2.38854 2.90606 3.00333 3.32980 3.54433 3.70823 3.77626 3.87798 3.97011 3.98601 4.00854 4.07367 4.14782 4.25652 4.28498 4.31848 4.50953 4.52324 4.52688 4.56958 4.58631 4.67312 4.74616 4.80814 4.89077 5.07356 5.09291 5.10810 5.11691 5.18931 5.29905 5.32220 5.36289 5.41410 5.42912 5.45575 5.50410 6.20699 6.51993 6.58176 7.07359 7.26258 7.29323 8.75351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036202 B = 0.001352 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.247905 B =20704.999740 C =21267.506953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.121 3.879 15 C -0.120 4.120 16 C 0.124 3.876 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.581 6.581 20 C -0.068 4.068 21 H 0.122 0.878 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.094 4.094 25 C -0.131 4.131 26 H 0.109 0.891 27 C -0.184 4.184 28 C -0.129 4.129 29 H 0.091 0.909 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.420 0.580 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.418 0.582 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.610 -31.033 -1.418 38.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C -0.004 4.004 15 C -0.158 4.158 16 C -0.001 4.001 17 N -0.369 5.369 18 C 0.299 3.701 19 O -0.460 6.460 20 C -0.089 4.089 21 H 0.140 0.860 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.149 4.149 26 H 0.127 0.873 27 C -0.221 4.221 28 C -0.148 4.148 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.670 -31.585 -1.424 37.237 hybrid contribution 1.396 1.387 0.069 1.969 sum 21.066 -30.198 -1.355 36.845 Atomic orbital electron populations 1.70193 1.08047 1.28537 1.48129 1.26136 0.95938 1.03370 0.93741 0.84895 0.78682 0.76283 0.78007 1.17841 1.20031 1.20020 1.23244 0.95396 0.91898 1.58711 0.89722 1.85645 1.10867 0.99476 1.97063 1.23366 1.03429 0.94146 1.07005 1.20120 0.86237 0.86857 0.75117 1.90704 1.17681 1.86167 1.50186 1.45651 1.10411 1.04848 1.75528 1.21221 0.97159 0.80160 1.01827 1.21792 0.97281 0.91042 1.05725 1.21090 0.89303 0.87962 1.01772 1.45848 1.10764 1.05181 1.75106 1.21158 0.90761 0.83432 0.74747 1.90710 1.25492 1.79008 1.50758 1.20586 0.94073 0.91240 1.03034 0.86034 1.21600 0.96503 1.01096 0.95689 1.21559 0.97083 0.93538 1.02933 1.21126 0.95666 0.98536 0.97765 1.22413 0.93383 0.97794 1.01351 0.87271 1.22962 0.96598 1.03980 0.98529 1.21433 1.03632 0.93321 0.96370 0.89091 0.92030 0.86960 0.86967 0.74281 0.92549 0.92535 0.88199 0.88209 0.92564 0.92479 0.74463 0.88637 0.92822 0.90481 0.89984 0.91966 0.90170 0.89904 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.17 29.55 68.60 2.03 45.19 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.79 9.50 67.95 0.65 -30.15 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 10 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 11 C 0.53 18.94 7.85 87.65 0.69 19.63 16 12 O -0.57 -26.38 15.86 -3.03 -0.05 -26.43 16 13 N -0.71 -15.86 5.56 -463.06 -2.57 -18.44 16 14 C 0.12 2.37 5.67 86.38 0.49 2.86 16 15 C -0.12 -1.16 5.44 30.60 0.17 -1.00 16 16 C 0.12 1.72 5.67 86.38 0.49 2.21 16 17 N -0.72 -7.64 5.45 -463.05 -2.53 -10.16 16 18 C 0.51 8.41 7.15 87.65 0.63 9.04 16 19 O -0.58 -15.55 15.66 -3.02 -0.05 -15.60 16 20 C -0.07 -0.69 2.51 -11.98 -0.03 -0.72 16 21 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 22 C -0.11 -0.69 4.85 30.57 0.15 -0.54 16 23 C -0.11 -0.51 5.92 30.65 0.18 -0.33 16 24 C -0.09 -0.66 5.84 30.46 0.18 -0.48 16 25 C -0.13 -1.38 6.19 -10.98 -0.07 -1.45 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 C -0.18 -2.89 9.16 30.58 0.28 -2.61 16 28 C -0.13 -1.77 4.71 -11.63 -0.05 -1.83 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 32 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.42 5.87 8.47 -92.71 -0.79 5.09 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.42 1.38 7.93 -92.71 -0.73 0.65 16 41 H 0.10 0.15 7.67 -2.39 -0.02 0.13 16 42 H 0.05 0.52 7.12 -2.39 -0.02 0.51 16 43 H 0.08 0.26 8.06 -2.39 -0.02 0.24 16 44 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.06 0.51 8.06 -2.39 -0.02 0.49 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.08 1.42 7.27 -2.39 -0.02 1.40 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -85.18 404.00 0.05 -85.13 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.56 Total: 14.55 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.65 Total: -8.62 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -4.81 Total: -84.35 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.10 Total: -42.03 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -85.18 0.05 -85.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758126372.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal (2) G-P(sol) polarization free energy of solvation -85.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds