Wall clock time and date at job start Tue Mar 31 2020 22:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47001 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.47045 * 29.99748 * 3 2 1 6 6 H 1.48497 * 109.47155 * 150.00310 * 3 2 1 7 7 C 1.38804 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99942 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99984 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46753 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00556 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99630 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00210 * 184.95126 * 13 11 10 15 15 H 1.09007 * 109.47252 * 326.18038 * 14 13 11 16 16 C 1.53005 * 109.47450 * 206.18261 * 14 13 11 17 17 N 1.46497 * 109.47126 * 54.99674 * 16 14 13 18 18 C 1.34780 * 120.00149 * 180.02562 * 17 16 14 19 19 O 1.21273 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99901 * 179.97438 * 18 17 16 21 21 C 1.52999 * 117.49863 * 248.62022 * 20 18 17 22 22 C 1.52996 * 60.00064 * 252.51313 * 21 20 18 23 23 C 1.52998 * 109.47450 * 86.18143 * 14 13 11 24 24 C 1.54266 * 110.03673 * 180.52950 * 23 14 13 25 25 C 1.54890 * 104.19670 * 217.10536 * 24 23 14 26 26 C 1.54886 * 102.74801 * 37.94141 * 25 24 23 27 27 C 1.53874 * 110.03580 * 63.36040 * 23 14 13 28 28 H 0.97004 * 119.99756 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46620 * 60.00270 * 10 9 7 30 30 H 1.08997 * 109.46863 * 299.99908 * 10 9 7 31 31 H 0.97002 * 120.00015 * 5.22130 * 13 11 10 32 32 H 1.09002 * 109.47531 * 174.99876 * 16 14 13 33 33 H 1.08997 * 109.46693 * 294.99997 * 16 14 13 34 34 H 0.97006 * 120.00061 * 0.02562 * 17 16 14 35 35 H 1.08998 * 115.54899 * 34.32889 * 20 18 17 36 36 H 1.09010 * 117.50075 * 0.02562 * 21 20 18 37 37 H 1.09001 * 117.49808 * 145.02156 * 21 20 18 38 38 H 1.08999 * 117.49794 * 252.50707 * 22 21 20 39 39 H 1.09002 * 117.51405 * 107.48247 * 22 21 20 40 40 H 1.08999 * 110.01303 * 301.96953 * 23 14 13 41 41 H 1.09006 * 110.48328 * 335.78377 * 24 23 14 42 42 H 1.08998 * 110.48771 * 98.42276 * 24 23 14 43 43 H 1.09004 * 110.75248 * 279.62012 * 25 24 23 44 44 H 1.08996 * 110.91240 * 156.32841 * 25 24 23 45 45 H 1.08999 * 110.48266 * 203.38291 * 26 25 24 46 46 H 1.08991 * 110.60136 * 80.79599 * 26 25 24 47 47 H 1.09002 * 110.03299 * 238.57426 * 27 23 14 48 48 H 1.09003 * 110.02807 * 0.02562 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3340 -7.7121 -0.1081 15 1 1.3713 -7.7825 0.3984 16 6 3.3249 -8.6790 0.5432 17 7 3.5815 -8.2592 1.9231 18 6 4.4294 -8.9664 2.6960 19 8 4.9803 -9.9500 2.2490 20 6 4.6937 -8.5343 4.1153 21 6 6.0881 -7.9955 4.4416 22 6 5.6661 -9.3787 4.9414 23 6 2.1614 -8.0762 -1.5841 24 6 1.6118 -9.5118 -1.7135 25 6 2.3347 -10.0846 -2.9579 26 6 3.7593 -9.4905 -2.8291 27 6 3.5268 -8.0627 -2.2935 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8906 30 1 3.1245 -3.7314 -0.8894 31 1 3.7982 -6.1857 0.0765 32 1 2.9054 -9.6850 0.5415 33 1 4.2594 -8.6740 -0.0178 34 1 3.1411 -7.4722 2.2805 35 1 3.8467 -8.0879 4.6363 36 1 6.8141 -7.9533 3.6296 37 1 6.1586 -7.1945 5.1775 38 1 5.4591 -9.4876 6.0060 39 1 6.1144 -10.2469 4.4583 40 1 1.4835 -7.3713 -2.0654 41 1 1.8580 -10.0959 -0.8267 42 1 0.5336 -9.4946 -1.8728 43 1 1.8548 -9.7425 -3.8749 44 1 2.3656 -11.1735 -2.9229 45 1 4.2483 -9.4578 -3.8027 46 1 4.3543 -10.0705 -2.1238 47 1 3.5113 -7.3518 -3.1197 48 1 4.3124 -7.7971 -1.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759993681.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:48 Heat of formation + Delta-G solvation = -90.096120 kcal Electronic energy + Delta-G solvation = -27425.385796 eV Core-core repulsion = 23605.436453 eV Total energy + Delta-G solvation = -3819.949343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54149 -40.65561 -39.33153 -37.22296 -36.36949 -34.75960 -34.56950 -32.17282 -30.06444 -29.56930 -28.40558 -27.64950 -25.16800 -23.57239 -23.28704 -22.15998 -21.40607 -21.18228 -19.99731 -19.84553 -18.49704 -18.08622 -17.70666 -17.05061 -16.86918 -16.51727 -16.33435 -16.28723 -15.84663 -15.74912 -15.61897 -14.97253 -14.65801 -14.63345 -14.37719 -14.08914 -13.67585 -13.51077 -13.42092 -13.15832 -13.11994 -12.89486 -12.61669 -12.43333 -12.35533 -11.97867 -11.93887 -11.78315 -11.71836 -11.54815 -11.48004 -11.42055 -11.37753 -11.13716 -10.96238 -10.92730 -10.25744 -10.16391 -10.09645 -8.64515 -8.34137 -6.11216 1.27335 1.42467 1.44685 1.47434 1.57033 1.60890 2.03802 2.24928 2.29614 2.92931 3.00297 3.31990 3.46938 3.63126 3.67526 3.77495 3.87000 3.88404 3.98604 4.00001 4.12485 4.22910 4.28912 4.34282 4.46746 4.53389 4.57216 4.62092 4.69351 4.75157 4.76924 4.83629 4.91367 4.94677 5.03250 5.04935 5.08758 5.22289 5.24179 5.26978 5.35560 5.40546 5.42880 5.48914 5.51156 6.20478 6.42708 6.46381 7.07767 7.15344 7.22651 8.74800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.002958 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.339167 B = 9464.589831 C =11783.708623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.131 4.131 11 C 0.542 3.458 12 O -0.558 6.558 13 N -0.708 5.708 14 C 0.150 3.850 15 H 0.081 0.919 16 C 0.118 3.882 17 N -0.718 5.718 18 C 0.541 3.459 19 O -0.580 6.580 20 C -0.206 4.206 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.119 4.119 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -20.419 3.261 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.081 5.919 10 C -0.282 4.282 11 C 0.328 3.672 12 O -0.435 6.435 13 N -0.362 5.362 14 C 0.045 3.955 15 H 0.099 0.901 16 C -0.006 4.006 17 N -0.369 5.369 18 C 0.329 3.671 19 O -0.461 6.461 20 C -0.227 4.227 21 C -0.180 4.180 22 C -0.187 4.187 23 C -0.118 4.118 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.157 4.157 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.247 0.753 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.220 -21.356 2.913 24.300 hybrid contribution 1.350 1.850 -0.078 2.291 sum 12.570 -19.507 2.835 23.378 Atomic orbital electron populations 1.70178 1.07924 1.28553 1.48083 1.26088 0.95919 1.03219 0.93812 0.84993 0.78292 0.76239 0.78720 1.19494 1.20378 1.18125 1.23206 0.95330 0.92142 1.58718 0.89988 1.85556 1.10328 0.99028 1.97033 1.23382 1.03601 0.94512 1.06727 1.19965 0.86162 0.86390 0.74724 1.90709 1.17218 1.85918 1.49659 1.45784 1.10433 1.04724 1.75295 1.21133 0.97837 0.80208 0.96370 0.90056 1.21741 0.99388 0.97932 0.81518 1.45927 1.46458 1.31283 1.13278 1.20096 0.77684 0.82006 0.87313 1.90673 1.51705 1.28183 1.75494 1.22285 0.97748 1.09420 0.93225 1.23024 0.93207 0.98235 1.03560 1.23000 1.00338 0.95020 1.00310 1.22075 0.97935 0.97978 0.93848 1.22497 1.00012 0.93955 0.99450 1.22472 0.95394 1.00570 0.97474 1.22364 0.97116 0.95115 1.01341 1.22224 0.95801 0.97894 0.99740 0.92040 0.87065 0.87599 0.74982 0.89532 0.89792 0.75318 0.84005 0.89009 0.85675 0.85888 0.89183 0.92591 0.90275 0.91810 0.91789 0.90392 0.91143 0.91102 0.92414 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.06 13.22 21.65 0.29 -54.78 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 42.77 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.55 -30.38 9.50 67.96 0.65 -29.74 16 8 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 9 S -0.15 -7.83 20.57 -56.49 -1.16 -9.00 16 10 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 11 C 0.54 17.96 7.82 87.66 0.69 18.65 16 12 O -0.56 -23.72 15.48 -3.04 -0.05 -23.77 16 13 N -0.71 -15.48 4.05 -442.54 -1.79 -17.28 16 14 C 0.15 3.01 1.94 44.99 0.09 3.09 16 15 H 0.08 1.99 7.48 -2.38 -0.02 1.97 16 16 C 0.12 2.01 4.68 86.38 0.40 2.41 16 17 N -0.72 -12.22 5.39 -463.07 -2.49 -14.72 16 18 C 0.54 10.86 7.61 87.66 0.67 11.53 16 19 O -0.58 -15.77 16.26 -3.01 -0.05 -15.81 16 20 C -0.21 -3.02 6.19 -11.54 -0.07 -3.09 16 21 C -0.14 -1.77 10.23 30.59 0.31 -1.45 16 22 C -0.15 -2.03 10.04 30.59 0.31 -1.72 16 23 C -0.10 -1.97 2.95 -10.07 -0.03 -2.00 16 24 C -0.12 -2.06 6.19 31.67 0.20 -1.86 16 25 C -0.12 -1.80 6.91 31.88 0.22 -1.58 16 26 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 27 C -0.12 -2.03 5.62 31.32 0.18 -1.85 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 30 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 31 H 0.41 6.86 8.55 -92.71 -0.79 6.06 16 32 H 0.09 1.51 6.29 -2.39 -0.02 1.50 16 33 H 0.08 1.40 6.13 -2.39 -0.01 1.39 16 34 H 0.41 6.38 8.14 -92.70 -0.75 5.63 16 35 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 37 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.55 7.67 -2.39 -0.02 1.54 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.21 5.85 -2.38 -0.01 1.19 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.11 5.86 -2.39 -0.01 1.10 16 Total: -1.00 -76.20 401.93 0.92 -75.27 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.57 Total: 27.56 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.72 Total: -12.29 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -4.00 Total: -86.77 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.16 Total: -9.00 kcal Total: -76.20 0.92 -75.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759993681.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds