Wall clock time and date at job start Tue Mar 31 2020 22:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33001 * 119.99393 * 2 1 4 4 C 1.50691 * 119.99627 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99811 * 0.02562 * 3 2 1 6 6 O 1.21607 * 120.00698 * 359.97438 * 5 3 2 7 7 N 1.34782 * 119.99394 * 179.97438 * 5 3 2 8 8 C 1.46499 * 119.99661 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46752 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46881 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88576 * 57.42721 * 10 9 8 12 12 C 1.55151 * 111.00571 * 181.35215 * 10 9 8 13 13 C 1.54338 * 103.02507 * 153.38046 * 12 10 9 14 14 N 1.47021 * 107.26155 * 338.14263 * 13 12 10 15 15 C 1.34781 * 125.64992 * 178.84864 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47422 * 108.70588 * 358.58342 * 14 13 12 28 28 H 1.09006 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47507 * 299.99367 * 1 2 3 30 30 H 1.08996 * 109.47204 * 60.00161 * 1 2 3 31 31 H 1.07993 * 120.00516 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47737 * 269.99868 * 4 3 2 33 33 H 1.09001 * 109.47425 * 29.99994 * 4 3 2 34 34 H 1.09005 * 109.47428 * 150.00221 * 4 3 2 35 35 H 0.97000 * 120.00072 * 359.97438 * 7 5 3 36 36 H 1.09006 * 109.46925 * 60.00617 * 8 7 5 37 37 H 1.08992 * 109.47367 * 300.00036 * 8 7 5 38 38 H 1.08995 * 109.47200 * 60.00709 * 9 8 7 39 39 H 1.08995 * 109.47162 * 299.99810 * 9 8 7 40 40 H 1.09003 * 110.72492 * 271.94110 * 12 10 9 41 41 H 1.09003 * 110.72257 * 35.03545 * 12 10 9 42 42 H 1.08996 * 109.99183 * 218.66499 * 13 12 10 43 43 H 1.08998 * 109.77679 * 97.49207 * 13 12 10 44 44 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 45 45 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.37421 * 143.19407 * 27 14 13 48 48 H 1.08997 * 110.36947 * 265.51777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 3.6788 1.1520 0.0006 5 6 1.4362 2.4257 0.0006 6 8 0.2202 2.4257 0.0006 7 7 2.1101 3.5930 0.0011 8 6 1.3775 4.8617 0.0011 9 6 2.3717 6.0246 0.0024 10 6 1.6066 7.3496 0.0030 11 1 0.9371 7.4113 0.8610 12 6 2.5825 8.5554 -0.0298 13 6 1.7431 9.6641 -0.6992 14 7 0.6733 9.0021 -1.4600 15 6 -0.2875 9.6261 -2.1701 16 8 -1.1199 8.9761 -2.7661 17 6 -0.3272 11.1317 -2.2233 18 16 -1.7221 11.6625 -3.2473 19 6 -1.5332 13.4110 -3.1389 20 1 -0.7260 13.8320 -2.5580 21 6 -2.4219 14.2474 -3.8003 22 7 -3.4061 13.7343 -4.5079 23 14 -2.2220 16.1011 -3.6848 24 1 -3.2903 16.7642 -4.4750 25 1 -2.3223 16.5222 -2.2644 26 1 -0.8943 16.4903 -4.2240 27 6 0.8292 7.5426 -1.3229 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0471 -0.9352 -0.0004 32 1 4.0419 1.1522 1.0283 33 1 4.0425 0.2619 -0.5129 34 1 4.0424 2.0419 -0.5133 35 1 3.0801 3.5930 0.0015 36 1 0.7505 4.9192 0.8910 37 1 0.7512 4.9196 -0.8890 38 1 2.9990 5.9674 -0.8872 39 1 2.9977 5.9665 0.8928 40 1 2.8723 8.8447 0.9803 41 1 3.4621 8.3234 -0.6303 42 1 2.3687 10.2501 -1.3724 43 1 1.3097 10.3103 0.0641 44 1 0.6024 11.5047 -2.6533 45 1 -0.4457 11.5279 -1.2148 46 1 -4.0273 14.3188 -4.9698 47 1 -0.1467 7.0606 -1.2640 48 1 1.4011 7.1418 -2.1598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:23 Heat of formation + Delta-G solvation = -69.220485 kcal Electronic energy + Delta-G solvation = -26117.108403 eV Core-core repulsion = 22298.064295 eV Total energy + Delta-G solvation = -3819.044108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33421 -39.81678 -37.65026 -35.89778 -35.21133 -33.14366 -32.41549 -30.81054 -29.89367 -29.54047 -27.39062 -25.52709 -25.33544 -24.36338 -22.89766 -21.87761 -20.76262 -19.48770 -19.31478 -17.71058 -16.73735 -16.65498 -16.38581 -16.17170 -15.86117 -15.20799 -14.79555 -14.63797 -14.59028 -14.25179 -14.11381 -13.85926 -13.67002 -13.45115 -13.22737 -13.01406 -12.95726 -12.77975 -12.57936 -12.49152 -12.35132 -12.31003 -11.88471 -11.82885 -11.72452 -11.34441 -11.03866 -11.03174 -10.95081 -10.94136 -10.75488 -9.86652 -9.81009 -9.60607 -9.38980 -9.22086 -9.04683 -8.48543 -8.22064 -6.48840 -6.20050 -3.90877 1.01685 2.84123 2.94159 2.95236 3.08678 3.24244 3.26805 3.30157 3.63467 4.10104 4.21870 4.28271 4.37310 4.40610 4.42665 4.72923 4.78954 4.81469 4.97116 5.02263 5.07586 5.09624 5.12348 5.14810 5.21943 5.26481 5.35349 5.44350 5.48616 5.53380 5.54861 5.62121 5.65291 5.65916 5.72775 5.74710 5.83833 5.96285 6.00237 6.02939 6.13690 6.15322 6.19326 6.44809 7.17910 7.60298 7.69303 7.93308 8.36271 8.58160 9.24798 10.87317 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.001674 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.019114 B =16720.337728 C =17604.696135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.113 4.113 5 C 0.547 3.453 6 O -0.534 6.534 7 N -0.730 5.730 8 C 0.115 3.885 9 C -0.118 4.118 10 C -0.099 4.099 11 H 0.090 0.910 12 C -0.124 4.124 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.110 3.890 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.754 -23.626 13.525 33.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.170 4.170 5 C 0.337 3.663 6 O -0.412 6.412 7 N -0.382 5.382 8 C -0.009 4.009 9 C -0.156 4.156 10 C -0.119 4.119 11 H 0.108 0.892 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.013 4.013 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.142 0.858 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.396 -24.469 12.458 32.504 hybrid contribution 1.734 2.036 0.775 2.784 sum 19.130 -22.432 13.233 32.315 Atomic orbital electron populations 1.21055 0.91607 1.01112 1.04299 1.23671 0.97372 0.96656 0.90842 1.21455 0.96351 0.93190 1.09520 1.20756 0.90931 1.02940 1.02401 1.18423 0.87304 0.84096 0.76517 1.90819 1.13551 1.87529 1.49313 1.45965 1.10329 1.05820 1.76099 1.21442 0.94776 0.81573 1.03063 1.21720 0.97929 0.92769 1.03154 1.22310 0.97290 0.93705 0.98583 0.89191 1.22681 0.97782 0.94294 1.01477 1.21987 0.89165 0.95691 0.95362 1.48499 1.29707 1.06625 1.51666 1.20032 0.79257 0.89766 0.77339 1.90713 1.37798 1.67270 1.43124 1.23507 1.07059 0.93151 1.05983 1.85414 1.31264 1.04876 1.61846 1.22821 1.17528 0.91058 1.37027 0.90992 1.24993 0.94464 0.99594 0.94502 1.70013 1.14713 1.35807 1.29715 0.86221 0.77996 0.82915 0.78347 1.20796 1.19941 1.19955 1.22241 1.00847 0.82046 0.96130 0.92934 0.90050 0.89925 0.85840 0.91131 0.91136 0.91778 0.76590 0.91215 0.90900 0.90763 0.90667 0.89916 0.90433 0.91260 0.91264 0.89345 0.89323 0.92125 0.90283 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.45 36.01 0.30 -0.71 16 2 C -0.07 -0.44 9.95 -36.12 -0.36 -0.80 16 3 C -0.20 -1.42 6.00 -102.85 -0.62 -2.04 16 4 C -0.11 -0.43 9.61 36.00 0.35 -0.09 16 5 C 0.55 5.29 7.72 -12.66 -0.10 5.20 16 6 O -0.53 -7.11 13.07 5.27 0.07 -7.05 16 7 N -0.73 -5.23 5.50 -61.49 -0.34 -5.56 16 8 C 0.11 0.90 5.52 -4.04 -0.02 0.88 16 9 C -0.12 -0.65 4.84 -26.73 -0.13 -0.78 16 10 C -0.10 -0.76 3.08 -88.47 -0.27 -1.04 16 11 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.12 -0.86 6.42 -24.89 -0.16 -1.02 16 13 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 14 N -0.63 -9.19 3.33 -170.52 -0.57 -9.76 16 15 C 0.55 10.91 7.87 -10.98 -0.09 10.82 16 16 O -0.52 -12.37 16.12 5.56 0.09 -12.28 16 17 C -0.15 -3.08 5.35 36.01 0.19 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.11 1.31 5.56 -2.53 -0.01 1.30 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.78 7.22 -51.93 -0.37 0.41 16 30 H 0.08 0.83 7.22 -51.93 -0.37 0.45 16 31 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 34 H 0.06 0.19 6.71 -51.93 -0.35 -0.16 16 35 H 0.40 1.73 6.57 -40.82 -0.27 1.46 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.72 7.46 -51.93 -0.39 0.33 16 38 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 48 H 0.06 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -37.35 405.47 -9.91 -47.26 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.03 Total: -2.41 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.74 Total: -3.25 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.17 Total: -41.00 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.16 Total: -19.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.35 -9.91 -47.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.957 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds