Wall clock time and date at job start Tue Mar 31 2020 23:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00210 * 2 1 4 4 C 1.53000 * 109.47567 * 124.99983 * 3 2 1 5 5 C 1.50695 * 109.47223 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00506 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99801 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99897 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.48775 * 34.95557 * 8 7 5 10 10 C 1.52572 * 109.49162 * 155.00453 * 8 7 5 11 11 C 1.47090 * 114.32442 * 204.97897 * 10 8 7 12 12 C 1.54859 * 110.32716 * 297.19500 * 11 10 8 13 13 N 1.44582 * 109.59744 * 71.26572 * 12 11 10 14 14 C 1.34775 * 118.64042 * 89.25793 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47595 * 122.71481 * 269.53084 * 13 12 11 27 27 C 1.50879 * 109.49160 * 274.88819 * 8 7 5 28 28 H 1.07999 * 119.99973 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99934 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99467 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47479 * 4.99642 * 3 2 1 32 32 H 1.08998 * 109.47272 * 244.99901 * 3 2 1 33 33 H 1.08995 * 109.47426 * 59.99353 * 4 3 2 34 34 H 1.09004 * 109.46965 * 299.99843 * 4 3 2 35 35 H 0.96992 * 119.99873 * 0.02562 * 7 5 4 36 36 H 1.08995 * 108.50893 * 83.72322 * 10 8 7 37 37 H 1.09005 * 108.50413 * 326.23094 * 10 8 7 38 38 H 1.09001 * 109.32296 * 176.93086 * 11 10 8 39 39 H 1.09001 * 109.33046 * 57.46084 * 11 10 8 40 40 H 1.09008 * 109.44788 * 311.23351 * 12 11 10 41 41 H 1.08999 * 109.45168 * 191.30768 * 12 11 10 42 42 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 43 43 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 44 44 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 45 45 H 1.09001 * 108.94797 * 162.55609 * 26 13 12 46 46 H 1.08998 * 108.95582 * 281.19272 * 26 13 12 47 47 H 1.09000 * 109.36761 * 268.33902 * 27 8 7 48 48 H 1.09000 * 109.36980 * 28.08528 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7882 2.6384 1.1819 6 8 3.5697 3.4647 0.3215 7 7 4.7045 2.8875 2.1384 8 6 5.4370 4.1562 2.1384 9 1 4.7829 4.9537 1.7857 10 6 5.9073 4.4726 3.5549 11 6 6.1231 5.9039 3.8162 12 6 7.2499 6.4528 2.9068 13 7 6.7796 6.5245 1.5415 14 6 6.1722 7.6536 1.1259 15 8 5.7677 7.7402 -0.0142 16 6 5.9946 8.8080 2.0782 17 16 5.1509 10.1659 1.2296 18 6 5.0780 11.3453 2.5365 19 1 5.4919 11.1048 3.5046 20 6 4.4886 12.5835 2.3219 21 7 3.9836 12.8764 1.1421 22 14 4.4120 13.8341 3.7073 23 1 3.7378 15.0663 3.2252 24 1 3.6470 13.2652 4.8460 25 1 5.7895 14.1649 4.1524 26 6 6.9320 5.4101 0.5857 27 6 6.6342 4.0463 1.2268 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 3.7400 0.5065 1.0922 34 1 2.4773 1.2356 2.1130 35 1 4.8795 2.2265 2.8263 36 1 6.8426 3.9429 3.7353 37 1 5.1618 4.1009 4.2580 38 1 6.4030 6.0417 4.8606 39 1 5.2009 6.4500 3.6175 40 1 8.1136 5.7898 2.9587 41 1 7.5364 7.4487 3.2448 42 1 6.9711 9.1466 2.4248 43 1 5.3975 8.4865 2.9315 44 1 4.0237 12.2271 0.4226 45 1 6.2494 5.5647 -0.2499 46 1 7.9547 5.4043 0.2088 47 1 7.4990 3.7188 1.8038 48 1 6.4260 3.3183 0.4428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065956830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:20 Heat of formation + Delta-G solvation = -95.067596 kcal Electronic energy + Delta-G solvation = -27442.990208 eV Core-core repulsion = 23622.825286 eV Total energy + Delta-G solvation = -3820.164922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70376 -40.74391 -38.75206 -36.46541 -36.02784 -34.76051 -34.03312 -33.39335 -31.60044 -30.52150 -27.76345 -27.09199 -26.42121 -24.90276 -23.16452 -21.75369 -21.29839 -20.69229 -20.62115 -19.80319 -18.35742 -17.97351 -17.75922 -17.38170 -16.79142 -16.57835 -16.42665 -15.78656 -15.71649 -15.46585 -15.34958 -15.16402 -14.75859 -14.52795 -14.35858 -14.26713 -14.08849 -13.95154 -13.57402 -13.47152 -13.36215 -13.04664 -12.84094 -12.74236 -12.38214 -12.04723 -12.04347 -11.95988 -11.94218 -11.71252 -11.67354 -11.54418 -11.10527 -10.97190 -10.91817 -10.32975 -10.25166 -10.19835 -9.70294 -8.94194 -8.90698 -6.29919 1.15673 1.36393 1.45128 1.50535 1.60082 1.63723 1.79984 2.00539 2.18780 2.33595 3.01164 3.08634 3.47916 3.65534 3.72965 3.77824 3.92155 3.93776 4.00487 4.04229 4.12570 4.15292 4.25812 4.31860 4.36055 4.43508 4.45722 4.57231 4.62983 4.68579 4.75824 4.85939 4.90460 4.92635 5.04407 5.06889 5.09968 5.18490 5.19483 5.31976 5.51602 5.58159 5.62156 5.72129 5.89076 6.11804 6.21171 6.57927 7.04450 7.06183 7.31505 8.48887 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.002432 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.488536 B =11508.569198 C =12472.910382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.084 4.084 4 C -0.122 4.122 5 C 0.499 3.501 6 O -0.594 6.594 7 N -0.712 5.712 8 C 0.143 3.857 9 H 0.035 0.965 10 C -0.116 4.116 11 C -0.137 4.137 12 C 0.096 3.904 13 N -0.594 5.594 14 C 0.521 3.479 15 O -0.572 6.572 16 C -0.098 4.098 17 S -0.207 6.207 18 C -0.609 4.609 19 H 0.078 0.922 20 C -0.022 4.022 21 N -0.914 5.914 22 Si 1.138 2.862 23 H -0.281 1.281 24 H -0.262 1.262 25 H -0.260 1.260 26 C 0.115 3.885 27 C -0.123 4.123 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.420 0.580 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.033 0.967 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.259 0.741 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -31.870 11.203 34.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.171 4.171 3 C -0.122 4.122 4 C -0.162 4.162 5 C 0.287 3.713 6 O -0.474 6.474 7 N -0.365 5.365 8 C 0.038 3.962 9 H 0.053 0.947 10 C -0.153 4.153 11 C -0.176 4.176 12 C -0.026 4.026 13 N -0.328 5.328 14 C 0.309 3.691 15 O -0.450 6.450 16 C -0.249 4.249 17 S 0.020 5.980 18 C -0.757 4.757 19 H 0.096 0.904 20 C -0.225 4.225 21 N -0.549 5.549 22 Si 0.955 3.045 23 H -0.206 1.206 24 H -0.187 1.187 25 H -0.185 1.185 26 C -0.008 4.008 27 C -0.162 4.162 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.258 0.742 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.052 0.948 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.130 0.870 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.341 -29.725 9.309 31.603 hybrid contribution 0.496 -1.286 0.333 1.418 sum 5.837 -31.010 9.642 32.995 Atomic orbital electron populations 1.24055 0.96307 1.02324 1.00907 1.22996 0.96018 0.98035 1.00066 1.20473 0.97807 0.95713 0.98189 1.21627 0.99044 0.94101 1.01388 1.21552 0.79470 0.89694 0.80555 1.90786 1.67170 1.50064 1.39396 1.46012 1.40074 1.19645 1.30735 1.20378 0.92618 0.85737 0.97453 0.94655 1.20659 1.03988 0.97215 0.93459 1.21275 0.98353 0.96238 1.01716 1.22053 0.97964 1.03951 0.78617 1.47699 1.58043 1.13183 1.13833 1.20308 0.76941 0.84368 0.87517 1.90684 1.50492 1.82051 1.21816 1.23243 1.04915 0.95625 1.01166 1.85199 1.77200 1.13008 1.22639 1.23999 1.48714 1.03773 0.99196 0.90422 1.27933 0.91392 1.00071 1.03057 1.70917 1.42751 1.37901 1.03327 0.82715 0.78218 0.72621 0.70925 1.20624 1.18678 1.18451 1.21718 1.01887 0.85750 0.91423 1.22050 0.99301 0.94913 0.99954 0.86730 0.89645 0.84925 0.93469 0.91901 0.85321 0.86607 0.74189 0.87600 0.90165 0.86835 0.94770 0.86124 0.89800 0.86843 0.87500 0.93043 0.93631 0.89778 0.86987 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.15 -1.92 9.52 25.64 0.24 -1.67 16 3 C -0.08 -1.46 4.95 29.85 0.15 -1.31 16 4 C -0.12 -1.46 5.68 29.85 0.17 -1.29 16 5 C 0.50 10.53 7.65 87.65 0.67 11.20 16 6 O -0.59 -20.61 15.64 -3.02 -0.05 -20.66 16 7 N -0.71 -10.33 4.93 -446.51 -2.20 -12.53 16 8 C 0.14 2.74 2.06 44.16 0.09 2.83 16 9 H 0.04 1.13 6.91 -2.39 -0.02 1.11 16 10 C -0.12 -1.32 4.69 28.61 0.13 -1.19 16 11 C -0.14 -2.12 5.62 29.39 0.17 -1.95 16 12 C 0.10 1.69 5.17 87.37 0.45 2.14 16 13 N -0.59 -16.66 2.25 -818.84 -1.84 -18.50 16 14 C 0.52 21.33 7.64 87.66 0.67 22.00 16 15 O -0.57 -29.61 15.14 -3.04 -0.05 -29.66 16 16 C -0.10 -4.16 4.65 71.24 0.33 -3.82 16 17 S -0.21 -12.04 19.60 -56.49 -1.11 -13.15 16 18 C -0.61 -36.03 9.50 67.95 0.65 -35.38 16 19 H 0.08 4.25 7.80 -2.92 -0.02 4.23 16 20 C -0.02 -1.30 5.49 84.86 0.47 -0.83 16 21 N -0.91 -59.84 13.67 21.65 0.30 -59.55 16 22 Si 1.14 50.02 29.92 68.60 2.05 52.07 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 26 C 0.11 2.95 6.07 86.38 0.52 3.48 16 27 C -0.12 -2.14 5.38 30.11 0.16 -1.97 16 28 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.09 1.30 7.84 -2.91 -0.02 1.28 16 30 H 0.13 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 32 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.42 2.28 8.60 -92.71 -0.80 1.48 16 36 H 0.11 0.48 7.36 -2.39 -0.02 0.47 16 37 H 0.08 0.76 8.04 -2.38 -0.02 0.74 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.03 0.80 7.27 -2.39 -0.02 0.78 16 40 H 0.12 1.18 8.07 -2.38 -0.02 1.16 16 41 H 0.08 1.53 6.26 -2.39 -0.01 1.52 16 42 H 0.11 4.26 7.30 -2.39 -0.02 4.24 16 43 H 0.11 4.17 7.08 -2.40 -0.02 4.15 16 44 H 0.26 17.76 7.12 -92.71 -0.66 17.10 16 45 H 0.04 1.63 6.96 -2.39 -0.02 1.62 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.11 1.01 7.32 -2.39 -0.02 1.00 16 48 H 0.07 1.39 7.85 -2.39 -0.02 1.37 16 Total: -1.00 -94.61 397.17 3.21 -91.40 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.26 Total: 19.99 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.84 Total: -9.42 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.75 Total: -90.58 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.09 Total: -50.32 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Atomic # 16 Polarization: -12.04 SS G_CDS: -1.11 Total: -13.15 kcal Total: -94.61 3.21 -91.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065956830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.664 kcal (2) G-P(sol) polarization free energy of solvation -94.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds