Wall clock time and date at job start Tue Mar 31 2020 22:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 C 1.53003 * 109.47074 * 119.99414 * 2 1 3 5 5 C 1.50701 * 109.46673 * 65.00467 * 4 2 1 6 6 O 1.21275 * 120.00537 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99746 * 179.97438 * 5 4 2 8 8 C 1.46607 * 125.29903 * 180.02562 * 7 5 4 9 9 C 1.54203 * 107.10893 * 162.52533 * 8 7 5 10 10 H 1.09003 * 113.15080 * 260.90503 * 9 8 7 11 11 C 1.54552 * 107.94073 * 134.90293 * 9 8 7 12 12 C 1.54035 * 103.78084 * 277.17263 * 11 9 8 13 13 N 1.46844 * 106.56410 * 331.62503 * 12 11 9 14 14 C 1.34778 * 125.32170 * 198.46762 * 13 12 11 15 15 O 1.21282 * 120.00178 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99993 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47137 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00517 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00058 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47033 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47212 * 210.00340 * 22 20 18 25 25 H 1.48505 * 109.46994 * 329.99896 * 22 20 18 26 26 C 1.46255 * 109.29032 * 18.48694 * 13 12 11 27 27 H 1.09007 * 111.18911 * 237.74339 * 26 13 12 28 28 C 1.46615 * 125.30007 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47610 * 60.00093 * 1 2 3 30 30 H 1.09002 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47527 * 299.99808 * 1 2 3 32 32 H 1.08996 * 109.47394 * 239.99788 * 2 1 3 33 33 H 1.09007 * 109.47092 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47164 * 299.99899 * 3 2 1 35 35 H 1.08996 * 109.47371 * 59.99774 * 3 2 1 36 36 H 1.08996 * 109.47525 * 305.00620 * 4 2 1 37 37 H 1.08993 * 109.46879 * 185.00198 * 4 2 1 38 38 H 1.08991 * 109.91425 * 43.15712 * 8 7 5 39 39 H 1.09001 * 109.90870 * 281.88778 * 8 7 5 40 40 H 1.09004 * 110.56385 * 158.59878 * 11 9 8 41 41 H 1.09005 * 110.56720 * 35.74800 * 11 9 8 42 42 H 1.09002 * 110.04642 * 90.91552 * 12 11 9 43 43 H 1.09005 * 110.04993 * 212.33631 * 12 11 9 44 44 H 1.08999 * 109.47512 * 300.00227 * 16 14 13 45 45 H 1.09010 * 109.46937 * 60.00544 * 16 14 13 46 46 H 0.97005 * 119.99496 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.74381 * 302.18951 * 28 7 5 48 48 H 1.08994 * 109.74712 * 62.87108 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 -2.1732 1.1890 6 8 1.0110 -2.5902 0.2405 7 7 1.9854 -3.0086 2.1892 8 6 1.6603 -4.4369 2.2497 9 6 2.5982 -5.0717 3.2962 10 1 3.4595 -5.5713 2.8527 11 6 1.7506 -6.0028 4.1924 12 6 1.1313 -5.0486 5.2310 13 7 2.0674 -3.9269 5.3794 14 6 2.0932 -3.0655 6.4156 15 8 2.9108 -2.1700 6.4395 16 6 1.1062 -3.2149 7.5445 17 16 1.3936 -1.9172 8.7730 18 6 0.1399 -2.3206 9.9435 19 1 -0.5123 -3.1633 9.7673 20 6 -0.0097 -1.5556 11.0919 21 7 -0.9460 -1.8574 11.9665 22 14 1.1178 -0.0977 11.3963 23 1 0.5179 1.1243 10.8031 24 1 1.2927 0.0961 12.8581 25 1 2.4393 -0.3547 10.7695 26 6 2.9661 -3.8918 4.2261 27 1 4.0086 -3.9621 4.5367 28 6 2.7429 -2.6304 3.3861 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1262 -0.6442 1.2952 38 1 1.8258 -4.8968 1.2755 39 1 0.6218 -4.5686 2.5536 40 1 2.3835 -6.7431 4.6821 41 1 0.9707 -6.4910 3.6080 42 1 0.1666 -4.6857 4.8764 43 1 1.0096 -5.5623 6.1846 44 1 0.0921 -3.1274 7.1546 45 1 1.2331 -4.1919 8.0111 46 1 -1.0502 -1.3228 12.7692 47 1 3.7042 -2.2068 3.0950 48 1 2.1779 -1.8989 3.9637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702140607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:50 Heat of formation + Delta-G solvation = -77.698927 kcal Electronic energy + Delta-G solvation = -27863.917325 eV Core-core repulsion = 24044.505565 eV Total energy + Delta-G solvation = -3819.411760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27193 -39.67543 -38.10713 -35.90665 -35.31520 -32.55236 -32.46740 -30.82356 -29.54990 -28.35550 -27.29161 -27.24666 -25.65592 -24.28547 -23.09203 -20.94988 -20.60478 -19.60598 -19.11692 -17.84645 -17.42323 -16.98057 -16.36566 -16.04998 -15.79599 -15.18566 -14.93368 -14.88889 -14.73573 -14.20444 -13.99191 -13.87603 -13.56989 -13.50003 -13.33361 -12.98966 -12.81021 -12.54677 -12.40552 -12.35603 -12.15966 -12.08846 -11.99068 -11.63580 -11.44033 -11.31466 -11.26403 -11.11610 -11.05054 -11.04409 -10.88647 -10.65701 -9.94092 -9.90117 -9.64730 -9.04531 -8.87473 -8.76961 -8.55898 -6.97585 -6.32891 -4.05372 2.42757 2.55664 2.73074 2.79917 3.10931 3.29747 3.46398 3.53380 3.78353 4.01441 4.25648 4.29019 4.42282 4.53902 4.62412 4.67115 4.69394 4.78643 4.84218 4.96134 5.02985 5.06165 5.08904 5.11864 5.27594 5.33518 5.38117 5.42658 5.43258 5.46660 5.49176 5.51659 5.61071 5.63926 5.70758 5.71519 5.76571 5.77428 5.90094 5.94333 6.02478 6.15127 6.24463 6.28118 7.23208 7.41268 7.90076 7.95442 8.28899 8.37583 9.13078 10.76341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002911 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.748160 B = 9616.106541 C =11147.843472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.135 4.135 5 C 0.531 3.469 6 O -0.539 6.539 7 N -0.616 5.616 8 C 0.111 3.889 9 C -0.106 4.106 10 H 0.113 0.887 11 C -0.123 4.123 12 C 0.098 3.902 13 N -0.615 5.615 14 C 0.549 3.451 15 O -0.513 6.513 16 C -0.118 4.118 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.137 3.863 27 H 0.097 0.903 28 C 0.094 3.906 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.078 0.922 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -5.205 -22.782 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.175 4.175 5 C 0.321 3.679 6 O -0.416 6.416 7 N -0.351 5.351 8 C -0.011 4.011 9 C -0.126 4.126 10 H 0.131 0.869 11 C -0.161 4.161 12 C -0.025 4.025 13 N -0.352 5.352 14 C 0.337 3.663 15 O -0.387 6.387 16 C -0.269 4.269 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.031 3.969 27 H 0.115 0.885 28 C -0.031 4.031 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.103 -3.930 -23.051 24.747 hybrid contribution -0.715 -0.448 0.553 1.009 sum 7.388 -4.378 -22.498 24.081 Atomic orbital electron populations 1.21966 0.94695 1.03311 1.01170 1.20862 0.96700 0.95391 0.96888 1.21870 1.00873 0.95735 1.02136 1.21795 1.02907 0.91573 1.01216 1.20434 0.78850 0.87964 0.80694 1.90662 1.40151 1.77896 1.32926 1.48282 1.55976 1.09720 1.21083 1.22033 0.98685 0.80934 0.99476 1.22986 0.99096 0.95404 0.95090 0.86935 1.22559 0.99687 0.97334 0.96523 1.22067 0.93063 0.87128 1.00212 1.48179 1.35153 1.31212 1.20619 1.20033 0.84650 0.80274 0.81302 1.90713 1.38305 1.32054 1.77658 1.23266 1.00670 1.05465 0.97475 1.84774 1.48083 1.38497 1.20095 1.22293 1.18400 1.19375 1.06847 0.89381 1.24712 0.94866 0.97166 0.94538 1.69936 1.31557 1.39542 1.10570 0.86738 0.83342 0.83133 0.78655 1.19190 1.19903 1.15912 1.21671 0.95691 0.93627 0.85871 0.88512 1.22192 0.96877 0.98183 0.85803 0.92935 0.90838 0.93198 0.90563 0.92673 0.92376 0.92429 0.88689 0.88914 0.90448 0.91247 0.89881 0.89232 0.91377 0.89915 0.88573 0.88433 0.91891 0.90371 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.93 37.16 0.33 -1.23 16 2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.97 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C -0.14 -1.27 4.34 -27.88 -0.12 -1.39 16 5 C 0.53 6.18 7.55 -10.98 -0.08 6.09 16 6 O -0.54 -7.73 14.25 5.56 0.08 -7.65 16 7 N -0.62 -6.43 3.31 -172.66 -0.57 -7.00 16 8 C 0.11 0.98 6.14 -3.35 -0.02 0.96 16 9 C -0.11 -0.74 4.24 -88.30 -0.37 -1.12 16 10 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 11 C -0.12 -0.76 6.22 -25.38 -0.16 -0.92 16 12 C 0.10 0.90 6.25 -3.31 -0.02 0.88 16 13 N -0.61 -7.49 3.02 -164.27 -0.50 -7.99 16 14 C 0.55 9.22 7.41 -10.98 -0.08 9.13 16 15 O -0.51 -10.23 15.63 5.56 0.09 -10.15 16 16 C -0.12 -2.21 5.19 36.01 0.19 -2.02 16 17 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 18 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 19 H 0.09 2.60 8.03 -52.48 -0.42 2.17 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 22 Si 0.86 21.40 27.74 -169.99 -4.72 16.69 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 26 C 0.14 1.35 3.49 -67.09 -0.23 1.12 16 27 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 28 C 0.09 0.97 5.95 -3.89 -0.02 0.95 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 39 H 0.07 0.64 7.30 -51.93 -0.38 0.26 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.43 7.82 -51.93 -0.41 0.02 16 42 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 43 H 0.08 0.74 7.61 -51.93 -0.40 0.34 16 44 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.10 1.70 7.87 -51.91 -0.41 1.29 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 1.03 7.30 -51.93 -0.38 0.65 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -34.19 392.45 -9.37 -43.57 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.18 Total: -1.42 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.27 Total: -1.05 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.29 Total: -40.44 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.72 Total: 16.69 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.19 -9.37 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702140607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.132 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds