Wall clock time and date at job start Tue Mar 31 2020 23:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.56281 * 2 1 4 4 C 1.52999 * 117.49638 * 145.68402 * 2 1 3 5 5 C 1.52997 * 117.50072 * 214.30601 * 2 1 3 6 6 H 1.09003 * 117.51976 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49852 * 145.01952 * 5 2 1 8 8 O 1.21277 * 120.00097 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00048 * 180.02562 * 7 5 2 10 10 C 1.46498 * 120.00146 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.47326 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47101 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.89014 * 51.12083 * 12 11 10 14 14 C 1.55158 * 111.00319 * 175.00042 * 12 11 10 15 15 C 1.54321 * 102.94163 * 153.57584 * 14 12 11 16 16 N 1.47019 * 107.27302 * 337.80498 * 15 14 12 17 17 C 1.34781 * 125.65306 * 178.90481 * 16 15 14 18 18 O 1.21274 * 120.00344 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99423 * 0.02625 * 17 16 15 20 20 S 1.81001 * 109.46896 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99894 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00323 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99766 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00034 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46807 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.46906 * 300.00462 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.47431 * 108.70235 * 359.16980 * 16 15 14 30 30 H 1.08999 * 109.47210 * 205.68733 * 1 2 3 31 31 H 1.09001 * 109.47371 * 325.69734 * 1 2 3 32 32 H 1.09009 * 109.46733 * 85.69475 * 1 2 3 33 33 H 1.08997 * 117.50284 * 0.02562 * 4 2 1 34 34 H 1.09008 * 117.51228 * 214.97252 * 4 2 1 35 35 H 0.97007 * 120.00146 * 0.02562 * 9 7 5 36 36 H 1.09000 * 109.46856 * 60.00204 * 10 9 7 37 37 H 1.08995 * 109.46986 * 300.00369 * 10 9 7 38 38 H 1.09000 * 109.46969 * 59.99715 * 11 10 9 39 39 H 1.09005 * 109.46883 * 299.99934 * 11 10 9 40 40 H 1.09004 * 110.71828 * 35.21525 * 14 12 11 41 41 H 1.08996 * 110.72053 * 271.94116 * 14 12 11 42 42 H 1.09004 * 109.88021 * 218.39320 * 15 14 12 43 43 H 1.08994 * 110.01452 * 97.29972 * 15 14 12 44 44 H 1.09001 * 109.47454 * 60.00304 * 19 17 16 45 45 H 1.09003 * 109.47322 * 299.99933 * 19 17 16 46 46 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 47 47 H 1.09003 * 110.36721 * 142.73511 * 29 16 15 48 48 H 1.08997 * 110.36721 * 265.06323 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6116 -1.8590 -1.2679 7 6 3.5293 -0.7811 -1.4607 8 8 3.9720 0.3464 -1.4008 9 7 4.1935 -1.7302 -2.1496 10 6 5.4506 -1.3999 -2.8256 11 6 5.9942 -2.6455 -3.5286 12 6 7.3073 -2.3007 -4.2340 13 1 7.9966 -1.8041 -3.5511 14 6 7.9546 -3.5671 -4.8541 15 6 8.7870 -2.9940 -6.0204 16 7 8.2106 -1.6867 -6.3669 17 6 8.6674 -0.8557 -7.3247 18 8 8.1112 0.2033 -7.5246 19 6 9.8694 -1.2427 -8.1473 20 16 10.2332 0.0705 -9.3387 21 6 11.6388 -0.6255 -10.1414 22 1 12.0105 -1.5927 -9.8372 23 6 12.2684 0.0694 -11.1649 24 7 11.8156 1.2486 -11.5354 25 14 13.7590 -0.6681 -12.0155 26 1 14.2418 0.2648 -13.0652 27 1 14.8366 -0.8932 -11.0188 28 1 13.3832 -1.9623 -12.6390 29 6 7.0541 -1.4322 -5.4888 30 1 -0.3633 -0.9261 0.4454 31 1 -0.3634 0.8489 0.5791 32 1 -0.3633 0.0772 -1.0249 33 1 1.6112 -1.8586 1.2681 34 1 3.1716 -0.8753 1.2684 35 1 3.8393 -2.6319 -2.1978 36 1 6.1768 -1.0504 -2.0917 37 1 5.2721 -0.6163 -3.5619 38 1 5.2678 -2.9946 -4.2624 39 1 6.1725 -3.4294 -2.7925 40 1 7.1894 -4.2491 -5.2250 41 1 8.5983 -4.0655 -4.1293 42 1 8.7313 -3.6630 -6.8793 43 1 9.8254 -2.8716 -5.7128 44 1 9.6614 -2.1702 -8.6807 45 1 10.7280 -1.3855 -7.4912 46 1 12.2558 1.7344 -12.2503 47 1 7.0084 -0.3774 -5.2176 48 1 6.1304 -1.7389 -5.9795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:52 Heat of formation + Delta-G solvation = -62.998162 kcal Electronic energy + Delta-G solvation = -25838.552886 eV Core-core repulsion = 22019.778598 eV Total energy + Delta-G solvation = -3818.774287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41889 -39.85884 -37.79809 -37.19920 -35.51573 -33.06222 -32.41774 -30.40642 -29.60649 -29.19918 -27.49788 -25.51403 -24.90515 -23.57889 -22.29745 -21.38133 -20.84572 -20.11567 -19.32863 -17.84399 -17.71317 -16.64950 -16.47055 -16.24619 -15.86967 -15.25534 -14.94223 -14.79888 -14.70881 -14.36113 -14.05026 -13.88428 -13.72435 -13.58587 -13.26430 -13.12941 -12.81384 -12.59536 -12.53806 -12.49196 -12.34267 -11.91118 -11.84597 -11.75384 -11.41330 -11.04279 -11.03366 -10.96874 -10.94827 -10.85166 -10.75748 -10.57106 -10.13884 -9.81421 -9.44518 -9.39491 -9.04896 -8.49300 -8.22442 -6.49181 -6.20286 -3.91165 2.13526 2.69775 2.93618 3.07951 3.24083 3.26589 3.29969 3.34726 3.62933 4.09222 4.16720 4.21630 4.27061 4.30473 4.36462 4.39765 4.64170 4.76601 4.80181 4.84918 5.01120 5.08731 5.09969 5.13824 5.14629 5.21456 5.21906 5.28785 5.34394 5.44551 5.47537 5.52802 5.58939 5.61932 5.64101 5.65394 5.73655 5.83052 5.84224 5.95691 5.99255 6.04752 6.14867 6.43840 7.10278 7.60039 7.68511 7.87531 8.36021 8.57406 9.24585 10.87093 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.001562 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.409147 B =17925.420930 C =18679.978220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.537 6.537 9 N -0.728 5.728 10 C 0.115 3.885 11 C -0.117 4.117 12 C -0.100 4.100 13 H 0.090 0.910 14 C -0.124 4.124 15 C 0.101 3.899 16 N -0.627 5.627 17 C 0.547 3.453 18 O -0.515 6.515 19 C -0.146 4.146 20 S -0.061 6.061 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.283 1.283 27 H -0.274 1.274 28 H -0.274 1.274 29 C 0.111 3.889 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.078 0.922 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 -14.151 24.859 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.187 4.187 5 C -0.215 4.215 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.414 6.414 9 N -0.379 5.379 10 C -0.009 4.009 11 C -0.155 4.155 12 C -0.120 4.120 13 H 0.108 0.892 14 C -0.162 4.162 15 C -0.022 4.022 16 N -0.365 5.365 17 C 0.336 3.664 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.200 1.200 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.422 -11.526 24.378 33.232 hybrid contribution 1.551 -2.328 -0.477 2.838 sum -17.871 -13.854 23.902 32.903 Atomic orbital electron populations 1.21412 0.92112 1.02287 1.02346 1.22394 0.95329 0.95139 1.01140 0.86410 1.23112 1.03218 1.01671 0.90655 1.22313 0.97759 1.05573 0.95814 0.85890 1.19694 0.84680 0.84690 0.78275 1.90732 1.68463 1.21027 1.61133 1.45925 1.24900 1.13477 1.53609 1.21464 0.85012 0.97851 0.96545 1.21720 0.96674 0.97309 0.99830 1.22276 0.96676 0.96573 0.96431 0.89212 1.22679 0.99518 0.96971 0.97026 1.21986 0.97799 0.84767 0.97679 1.48501 1.31669 1.19759 1.36567 1.20036 0.84708 0.82944 0.78707 1.90713 1.58585 1.22771 1.66840 1.23506 0.97362 1.06602 1.02217 1.85415 1.38447 1.21612 1.37938 1.22818 1.15542 1.07485 1.22586 0.90998 1.24991 0.97743 0.94757 0.96036 1.70013 1.39885 1.12171 1.28183 0.86224 0.81501 0.78849 0.78921 1.20792 1.19937 1.19951 1.22202 0.89264 1.00597 0.89185 0.92341 0.91550 0.91839 0.87736 0.88263 0.76518 0.91225 0.90919 0.90682 0.90607 0.90385 0.89894 0.91273 0.91260 0.89337 0.89323 0.92123 0.90324 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.19 37.16 0.38 -0.20 16 2 C -0.12 -0.80 5.92 -90.62 -0.54 -1.33 16 3 H 0.12 1.01 7.67 -51.93 -0.40 0.61 16 4 C -0.15 -0.79 9.88 -26.73 -0.26 -1.05 16 5 C -0.19 -1.22 5.91 -91.77 -0.54 -1.76 16 6 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 7 C 0.54 5.05 7.61 -10.99 -0.08 4.97 16 8 O -0.54 -7.49 16.26 5.56 0.09 -7.40 16 9 N -0.73 -4.91 5.56 -60.29 -0.33 -5.24 16 10 C 0.11 0.88 5.58 -4.04 -0.02 0.85 16 11 C -0.12 -0.63 4.84 -26.73 -0.13 -0.76 16 12 C -0.10 -0.76 2.99 -88.59 -0.27 -1.03 16 13 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.12 -0.85 6.42 -24.90 -0.16 -1.01 16 15 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 16 N -0.63 -9.16 3.33 -170.66 -0.57 -9.73 16 17 C 0.55 10.89 7.87 -10.98 -0.09 10.80 16 18 O -0.52 -12.36 16.12 5.56 0.09 -12.27 16 19 C -0.15 -3.07 5.35 36.01 0.19 -2.88 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.11 1.30 5.85 -2.64 -0.02 1.29 16 30 H 0.06 0.20 7.90 -51.93 -0.41 -0.21 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 33 H 0.10 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.40 1.45 8.47 -40.82 -0.35 1.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 38 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 48 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 LS Contribution 411.41 15.07 6.20 6.20 Total: -1.00 -37.82 411.41 -10.63 -48.45 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -8.25 Total: -2.76 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.36 Total: -4.18 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.17 Total: -40.64 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.18 Total: -19.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.82 -10.63 -48.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.543 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds