Wall clock time and date at job start Tue Mar 31 2020 23:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.77583 * 2 1 4 4 C 1.54426 * 110.75885 * 123.26905 * 2 1 3 5 5 N 1.47027 * 107.28179 * 140.54242 * 4 2 1 6 6 C 1.34775 * 125.64663 * 181.02209 * 5 4 2 7 7 O 1.21283 * 119.99484 * 180.02562 * 6 5 4 8 8 C 1.50694 * 120.00489 * 0.04329 * 6 5 4 9 9 S 1.80995 * 109.47282 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99854 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00357 * 0.02562 * 10 9 8 12 12 C 1.38811 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99643 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99935 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47036 * 90.00233 * 14 12 10 16 16 H 1.48501 * 109.47076 * 209.99955 * 14 12 10 17 17 H 1.48501 * 109.47114 * 330.00143 * 14 12 10 18 18 C 1.47421 * 108.69911 * 1.06305 * 5 4 2 19 19 C 1.54915 * 104.83402 * 335.86680 * 18 5 4 20 20 H 1.09004 * 111.00182 * 155.12389 * 19 18 5 21 21 N 1.46499 * 111.00683 * 278.94044 * 19 18 5 22 22 C 1.34777 * 119.99665 * 270.69541 * 21 19 18 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 C 1.52994 * 112.85569 * 48.79984 * 24 22 21 26 26 C 1.53785 * 113.61241 * 277.49275 * 24 22 21 27 27 C 1.53784 * 87.08008 * 220.02343 * 26 24 22 28 28 C 1.53777 * 87.08320 * 25.42966 * 27 26 24 29 29 H 1.08994 * 109.46846 * 183.24302 * 1 2 3 30 30 H 1.08993 * 109.46874 * 303.24404 * 1 2 3 31 31 H 1.08998 * 109.46638 * 63.24307 * 1 2 3 32 32 H 1.09002 * 109.88212 * 21.12111 * 4 2 1 33 33 H 1.09006 * 110.00740 * 260.03446 * 4 2 1 34 34 H 1.09004 * 109.47360 * 300.00352 * 8 6 5 35 35 H 1.09003 * 109.47000 * 59.99800 * 8 6 5 36 36 H 0.97002 * 119.99651 * 179.97438 * 13 12 10 37 37 H 1.09003 * 110.36164 * 217.03248 * 18 5 4 38 38 H 1.08995 * 110.46258 * 94.76027 * 18 5 4 39 39 H 0.97001 * 119.99790 * 90.41254 * 21 19 18 40 40 H 1.08996 * 109.47082 * 69.66306 * 25 24 22 41 41 H 1.08998 * 109.47474 * 189.66917 * 25 24 22 42 42 H 1.09002 * 109.46720 * 309.66968 * 25 24 22 43 43 H 1.08997 * 113.61396 * 334.56707 * 26 24 22 44 44 H 1.08993 * 113.61805 * 105.47326 * 26 24 22 45 45 H 1.09007 * 113.61133 * 270.88378 * 27 26 24 46 46 H 1.09002 * 113.61483 * 139.98337 * 27 26 24 47 47 H 1.08995 * 113.61727 * 220.01929 * 28 27 26 48 48 H 1.09009 * 113.68439 * 89.12728 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0774 -0.7921 1.2073 5 7 3.2458 -1.5514 0.7382 6 6 3.9941 -2.3844 1.4883 7 8 4.9400 -2.9607 0.9941 8 6 3.6554 -2.6000 2.9407 9 16 4.8349 -3.7638 3.6690 10 6 4.2212 -3.8287 5.3194 11 1 3.3566 -3.2444 5.5975 12 6 4.8491 -4.6310 6.2623 13 7 5.9032 -5.3428 5.9235 14 14 4.1980 -4.7004 8.0117 15 1 3.1913 -5.7865 8.1225 16 1 5.3199 -4.9682 8.9471 17 1 3.5654 -3.4019 8.3563 18 6 3.4637 -1.2498 -0.6883 19 6 2.0790 -0.7955 -1.2137 20 1 2.1844 -0.1521 -2.0872 21 7 1.2271 -1.9489 -1.5143 22 6 1.2548 -2.5053 -2.7415 23 8 1.9811 -2.0481 -3.5985 24 6 0.3831 -3.6956 -3.0488 25 6 -1.0705 -3.4954 -2.6154 26 6 0.9853 -5.0347 -2.5915 27 6 0.4554 -5.6319 -3.9059 28 6 0.5305 -4.2114 -4.4901 29 1 -0.3633 -1.0260 0.0581 30 1 -0.3633 0.5633 0.8594 31 1 -0.3632 0.4627 -0.9176 32 1 1.3147 -1.4770 1.5779 33 1 2.3754 -0.1055 1.9998 34 1 3.7079 -1.6492 3.4711 35 1 2.6472 -3.0062 3.0223 36 1 6.3422 -5.9031 6.5825 37 1 3.7963 -2.1425 -1.2182 38 1 4.1939 -0.4485 -0.8012 39 1 0.6463 -2.3146 -0.8288 40 1 -1.5405 -2.7480 -3.2545 41 1 -1.6090 -4.4389 -2.7029 42 1 -1.0973 -3.1563 -1.5798 43 1 2.0732 -5.0238 -2.5243 44 1 0.5093 -5.4463 -1.7017 45 1 -0.5605 -6.0199 -3.8308 46 1 1.1442 -6.3342 -4.3754 47 1 -0.3126 -3.9584 -5.1328 48 1 1.4936 -3.9743 -4.9423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071657504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:28 Heat of formation + Delta-G solvation = -80.536861 kcal Electronic energy + Delta-G solvation = -27984.555448 eV Core-core repulsion = 24165.020625 eV Total energy + Delta-G solvation = -3819.534823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94302 -40.98783 -39.33078 -38.25069 -35.27391 -34.58988 -33.33644 -31.81206 -30.60149 -29.13687 -27.67222 -27.29007 -26.66188 -25.91864 -23.99884 -22.36027 -21.05753 -20.75735 -19.85838 -19.49358 -18.30870 -17.96377 -17.81896 -16.90863 -16.88334 -16.48088 -16.29305 -15.81798 -15.73884 -15.58737 -15.32037 -14.68498 -14.48641 -14.33804 -14.28278 -13.86437 -13.72953 -13.57117 -13.46580 -13.29496 -13.20581 -13.15380 -13.05503 -12.88771 -12.60969 -12.38550 -12.24739 -12.14018 -11.97583 -11.78743 -11.71548 -11.46567 -11.24971 -11.14489 -11.02048 -10.62557 -10.31773 -10.28461 -9.67010 -8.69515 -8.34960 -6.14164 1.22384 1.42940 1.44463 1.51797 1.55102 1.56366 2.03995 2.12010 2.26794 2.99366 3.17838 3.31668 3.40542 3.46603 3.52820 3.73841 3.81457 3.84953 3.89193 3.98091 4.15894 4.24747 4.29952 4.42082 4.48728 4.53102 4.58538 4.64000 4.67495 4.70039 4.72855 4.80490 4.84096 4.90005 4.99913 5.05821 5.06863 5.14684 5.17618 5.24249 5.27316 5.40364 5.41190 5.44502 5.51519 6.19310 6.33712 6.47603 7.05949 7.07275 7.18644 8.74357 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.002708 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.277459 B =10337.545724 C =11058.737457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.121 0.879 4 C 0.090 3.910 5 N -0.612 5.612 6 C 0.544 3.456 7 O -0.571 6.571 8 C -0.116 4.116 9 S -0.155 6.155 10 C -0.543 4.543 11 H 0.085 0.915 12 C 0.012 3.988 13 N -0.913 5.913 14 Si 1.000 3.000 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.256 1.256 18 C 0.093 3.907 19 C 0.141 3.859 20 H 0.113 0.887 21 N -0.704 5.704 22 C 0.526 3.474 23 O -0.581 6.581 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.118 4.118 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.411 0.589 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 10.327 -15.869 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.139 0.861 4 C -0.031 4.031 5 N -0.346 5.346 6 C 0.333 3.667 7 O -0.450 6.450 8 C -0.267 4.267 9 S 0.072 5.928 10 C -0.691 4.691 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.822 3.178 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.180 1.180 18 C -0.031 4.031 19 C 0.035 3.965 20 H 0.131 0.869 21 N -0.356 5.356 22 C 0.314 3.686 23 O -0.460 6.460 24 C -0.111 4.111 25 C -0.179 4.179 26 C -0.167 4.167 27 C -0.167 4.167 28 C -0.156 4.156 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.249 0.751 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.712 9.658 -17.098 27.824 hybrid contribution -0.452 0.092 1.734 1.795 sum -20.164 9.750 -15.363 27.160 Atomic orbital electron populations 1.21721 0.91213 1.02846 1.03704 1.22562 0.98400 0.99788 0.90220 0.86143 1.22572 0.86880 0.95327 0.98365 1.48379 1.30965 1.44461 1.10838 1.19868 0.81445 0.77828 0.87586 1.90700 1.30559 1.49645 1.74062 1.23278 1.04622 1.04574 0.94243 1.85688 1.40738 1.56515 1.09882 1.23181 1.18096 1.32580 0.95253 0.89706 1.26165 0.94739 0.93894 1.04443 1.70197 1.20644 1.27271 1.36784 0.84928 0.77899 0.79378 0.75614 1.19184 1.20485 1.17979 1.22714 0.99036 1.00417 0.80902 1.22084 0.87700 0.87673 0.99074 0.86918 1.45907 1.44077 1.32280 1.13349 1.20967 0.82147 0.83936 0.81590 1.90667 1.43033 1.64119 1.48190 1.22283 0.97369 0.91533 0.99923 1.21622 0.90257 1.03997 1.02051 1.22923 0.99715 0.94144 0.99902 1.22837 1.02751 0.96004 0.95083 1.22843 1.02639 0.96000 0.94073 0.92044 0.90158 0.91112 0.89759 0.89513 0.87380 0.87240 0.92017 0.93735 0.90022 0.75121 0.91028 0.89625 0.90874 0.92609 0.89353 0.87401 0.91243 0.89491 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.72 71.98 0.63 -0.23 16 2 C -0.09 -0.97 3.42 -9.57 -0.03 -1.00 16 3 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.09 1.48 6.08 86.76 0.53 2.01 16 5 N -0.61 -16.79 3.33 -811.57 -2.70 -19.49 16 6 C 0.54 21.33 7.87 87.66 0.69 22.01 16 7 O -0.57 -28.47 16.12 -3.04 -0.05 -28.52 16 8 C -0.12 -4.65 5.35 71.23 0.38 -4.27 16 9 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.54 -30.77 9.50 67.96 0.65 -30.12 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.69 5.49 84.86 0.47 1.16 16 13 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 14 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 C 0.09 2.41 6.60 86.86 0.57 2.98 16 19 C 0.14 2.44 3.12 46.38 0.14 2.58 16 20 H 0.11 2.00 7.64 -2.39 -0.02 1.99 16 21 N -0.70 -12.10 4.51 -435.96 -1.97 -14.07 16 22 C 0.53 11.56 6.93 87.66 0.61 12.17 16 23 O -0.58 -17.56 15.59 -3.04 -0.05 -17.60 16 24 C -0.11 -1.77 1.26 -52.40 -0.07 -1.83 16 25 C -0.12 -1.12 8.98 71.98 0.65 -0.47 16 26 C -0.13 -2.32 7.20 31.12 0.22 -2.09 16 27 C -0.13 -1.84 7.73 31.12 0.24 -1.60 16 28 C -0.12 -2.00 7.00 31.12 0.22 -1.78 16 29 H 0.06 0.35 6.42 -2.39 -0.02 0.34 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 1.20 7.77 -2.39 -0.02 1.18 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 5.42 5.93 -92.71 -0.55 4.87 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.57 7.34 -2.39 -0.02 0.56 16 42 H 0.07 0.50 7.04 -2.39 -0.02 0.48 16 43 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 44 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 45 H 0.11 1.03 7.64 -2.38 -0.02 1.01 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 1.17 8.10 -2.39 -0.02 1.15 16 48 H 0.07 1.51 7.43 -2.38 -0.02 1.49 16 Total: -1.00 -83.90 398.38 2.69 -81.21 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.40 Total: 19.65 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.89 Total: -0.49 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.38 Total: -89.43 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.10 Total: -46.13 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -83.90 2.69 -81.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071657504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.674 kcal (2) G-P(sol) polarization free energy of solvation -83.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds