Wall clock time and date at job start Tue Mar 31 2020 22:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47486 * 2 1 4 4 N 1.46503 * 109.47433 * 239.99822 * 2 1 3 5 5 C 1.34781 * 119.99570 * 84.99302 * 4 2 1 6 6 O 1.21277 * 120.00188 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99531 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.47373 * 300.00136 * 7 5 4 9 9 C 1.53002 * 109.47194 * 60.00528 * 7 5 4 10 10 C 1.53002 * 109.46883 * 180.02562 * 7 5 4 11 11 C 1.53002 * 117.49685 * 128.61963 * 10 7 5 12 12 C 1.52996 * 60.00340 * 252.51168 * 11 10 7 13 13 C 1.53004 * 109.47306 * 120.00116 * 2 1 3 14 14 C 1.53950 * 113.74237 * 201.26123 * 13 2 1 15 15 N 1.47925 * 85.99684 * 138.00209 * 14 13 2 16 16 C 1.34781 * 134.49765 * 155.33856 * 15 14 13 17 17 O 1.21284 * 119.99558 * 180.02562 * 16 15 14 18 18 C 1.50693 * 120.00201 * 0.02608 * 16 15 14 19 19 S 1.81004 * 109.47028 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99691 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00331 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99696 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99779 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47130 * 90.00219 * 24 22 20 26 26 H 1.48503 * 109.47051 * 210.00376 * 24 22 20 27 27 H 1.48506 * 109.47306 * 330.00066 * 24 22 20 28 28 C 1.47579 * 91.00789 * 335.35638 * 15 14 13 29 29 H 1.08993 * 109.47377 * 60.00007 * 1 2 3 30 30 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46982 * 299.99826 * 1 2 3 32 32 H 0.97002 * 120.00434 * 265.00447 * 4 2 1 33 33 H 1.09004 * 109.47108 * 179.97438 * 9 7 5 34 34 H 1.09000 * 109.47185 * 299.99828 * 9 7 5 35 35 H 1.09004 * 109.46889 * 60.00060 * 9 7 5 36 36 H 1.08997 * 115.55260 * 274.33435 * 10 7 5 37 37 H 1.08998 * 117.50069 * 0.02562 * 11 10 7 38 38 H 1.09000 * 117.49610 * 145.02274 * 11 10 7 39 39 H 1.08996 * 117.50331 * 252.50924 * 12 11 10 40 40 H 1.09002 * 117.51429 * 107.47768 * 12 11 10 41 41 H 1.09002 * 112.94408 * 69.66539 * 13 2 1 42 42 H 1.09006 * 113.76402 * 252.36366 * 14 13 2 43 43 H 1.08997 * 113.76968 * 23.74991 * 14 13 2 44 44 H 1.09003 * 109.47398 * 300.00036 * 18 16 15 45 45 H 1.09002 * 109.47187 * 59.99834 * 18 16 15 46 46 H 0.97000 * 119.99967 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.77049 * 270.34039 * 28 15 14 48 48 H 1.08999 * 113.87175 * 138.95072 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1469 -0.0183 -2.3572 6 8 1.8588 1.1585 -2.4115 7 6 2.6488 -0.7288 -3.5877 8 1 3.6479 -1.1213 -3.3986 9 6 1.7043 -1.8824 -3.9314 10 6 2.7008 0.2544 -4.7588 11 6 4.0100 0.3478 -5.5452 12 6 3.5975 1.4851 -4.6086 13 6 2.0400 -0.7213 1.2492 14 6 3.4848 -0.3520 1.6317 15 7 2.9970 -0.3201 3.0278 16 6 3.5762 -0.4774 4.2347 17 8 2.9075 -0.3964 5.2433 18 6 5.0544 -0.7540 4.3308 19 16 5.5262 -0.9147 6.0708 20 6 7.2514 -1.2260 5.8924 21 1 7.6939 -1.2666 4.9081 22 6 8.0416 -1.4189 7.0171 23 7 9.3304 -1.6510 6.8839 24 14 7.2764 -1.3479 8.7197 25 1 6.8190 -2.7047 9.1138 26 1 8.2848 -0.8625 9.6958 27 1 6.1170 -0.4201 8.7030 28 6 1.6213 -0.0472 2.5685 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 2.0671 -2.3961 -4.8217 34 1 1.6676 -2.5828 -3.0970 35 1 0.7052 -1.4899 -4.1206 36 1 1.7704 0.3744 -5.3136 37 1 4.8340 -0.2916 -5.2285 38 1 3.9409 0.5290 -6.6178 39 1 3.2571 2.4146 -5.0650 40 1 4.1500 1.5944 -3.6754 41 1 1.8528 -1.7949 1.2263 42 1 4.2074 -1.1441 1.4348 43 1 3.8041 0.6198 1.2555 44 1 5.2857 -1.6804 3.8049 45 1 5.6081 0.0686 3.8782 46 1 9.8828 -1.7855 7.6698 47 1 1.3945 1.0141 2.4668 48 1 0.8559 -0.5950 3.1181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571938116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:22 Heat of formation + Delta-G solvation = -47.261503 kcal Electronic energy + Delta-G solvation = -26713.779452 eV Core-core repulsion = 22895.687558 eV Total energy + Delta-G solvation = -3818.091895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65749 -40.84824 -39.16170 -37.97018 -36.03999 -34.69548 -33.71887 -32.18725 -30.97340 -29.03198 -27.88651 -27.03178 -25.76649 -24.62359 -23.18474 -22.47152 -21.57924 -20.75388 -20.28408 -19.57134 -18.22800 -17.91880 -17.58479 -17.19187 -16.78464 -16.72951 -16.38322 -15.81607 -15.71456 -15.54005 -15.21727 -14.94597 -14.70477 -14.57118 -14.19093 -13.83243 -13.70912 -13.52608 -13.38475 -13.29521 -13.15649 -13.06815 -13.01670 -12.69166 -12.66444 -12.60976 -12.34358 -11.98450 -11.90117 -11.85792 -11.77466 -11.31188 -11.19040 -10.98408 -10.94209 -10.57702 -10.48745 -10.00887 -9.80711 -9.03733 -8.53626 -6.25310 0.92410 1.29857 1.40770 1.48467 1.51784 1.75827 1.91923 2.15428 2.23303 2.64016 2.84464 3.00356 3.26771 3.43965 3.64456 3.69435 3.86978 3.97786 4.03693 4.12979 4.16563 4.21382 4.33331 4.36759 4.40880 4.42229 4.46908 4.49351 4.55770 4.62132 4.66772 4.80426 4.84203 4.85238 4.93139 5.01267 5.07889 5.10707 5.19672 5.25627 5.28824 5.35109 5.41508 5.59869 5.68654 6.08875 6.50737 6.65921 6.91300 7.02230 7.38037 8.58734 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.002036 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.582820 B =13752.109415 C =14928.618081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.075 0.925 4 N -0.715 5.715 5 C 0.515 3.485 6 O -0.573 6.573 7 C -0.078 4.078 8 H 0.113 0.887 9 C -0.137 4.137 10 C -0.141 4.141 11 C -0.167 4.167 12 C -0.177 4.177 13 C -0.103 4.103 14 C 0.102 3.898 15 N -0.649 5.649 16 C 0.554 3.446 17 O -0.567 6.567 18 C -0.101 4.101 19 S -0.176 6.176 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.260 1.260 26 H -0.258 1.258 27 H -0.239 1.239 28 C 0.114 3.886 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.278 0.722 47 H 0.095 0.905 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 -1.044 -27.197 32.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.094 0.906 4 N -0.367 5.367 5 C 0.303 3.697 6 O -0.451 6.451 7 C -0.099 4.099 8 H 0.131 0.869 9 C -0.194 4.194 10 C -0.159 4.159 11 C -0.204 4.204 12 C -0.214 4.214 13 C -0.123 4.123 14 C -0.019 4.019 15 N -0.385 5.385 16 C 0.342 3.658 17 O -0.446 6.446 18 C -0.252 4.252 19 S 0.051 5.949 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.553 5.553 24 Si 0.736 3.264 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.163 1.163 28 C -0.009 4.009 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.148 0.852 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.970 -0.147 -25.478 31.765 hybrid contribution 1.277 -0.162 -0.225 1.306 sum -17.693 -0.308 -25.702 31.205 Atomic orbital electron populations 1.22113 0.94178 1.03152 1.02274 1.20760 0.94693 0.96433 0.82722 0.90645 1.45982 1.67217 1.14735 1.08794 1.21049 0.76659 0.86855 0.85162 1.90704 1.51071 1.17811 1.85523 1.20948 1.02424 0.95986 0.90518 0.86908 1.21744 0.98114 0.95969 1.03597 1.22029 0.95604 0.99020 0.99297 1.23160 0.97330 1.01623 0.98243 1.22732 1.04024 0.93533 1.01100 1.23300 0.94324 1.02396 0.92259 1.23659 0.98124 1.03238 0.76889 1.50079 1.12835 1.70676 1.04898 1.19645 0.88244 0.75743 0.82124 1.90686 1.65284 1.52539 1.36049 1.23163 0.95268 1.06485 1.00287 1.84724 1.08254 1.94326 1.07629 1.22423 0.92347 1.56017 0.96805 0.91967 1.25563 0.94660 0.92892 1.02853 1.70010 1.05767 1.47267 1.32276 0.85870 0.80179 0.80726 0.79614 1.18500 1.18222 1.16264 1.23339 0.84284 1.01655 0.91586 0.93613 0.90793 0.90805 0.74817 0.90164 0.90288 0.92905 0.88049 0.87750 0.87862 0.89643 0.90302 0.85213 0.88199 0.88796 0.87079 0.87628 0.91295 0.88659 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.31 71.98 0.67 -0.99 16 2 C 0.16 1.73 2.38 44.99 0.11 1.83 16 3 H 0.08 1.17 7.42 -2.39 -0.02 1.15 16 4 N -0.71 -6.38 4.97 -442.53 -2.20 -8.58 16 5 C 0.52 7.34 6.99 87.66 0.61 7.95 16 6 O -0.57 -13.26 14.74 -3.02 -0.04 -13.30 16 7 C -0.08 -0.72 2.88 -11.54 -0.03 -0.76 16 8 H 0.11 0.73 7.90 -2.39 -0.02 0.71 16 9 C -0.14 -0.71 9.07 71.98 0.65 -0.05 16 10 C -0.14 -1.78 4.73 -10.79 -0.05 -1.83 16 11 C -0.17 -1.74 10.18 30.59 0.31 -1.43 16 12 C -0.18 -2.77 8.97 30.60 0.27 -2.50 16 13 C -0.10 -1.09 3.46 -10.13 -0.04 -1.12 16 14 C 0.10 1.56 8.20 86.42 0.71 2.27 16 15 N -0.65 -15.88 3.62 -835.61 -3.02 -18.90 16 16 C 0.55 19.96 8.08 87.65 0.71 20.67 16 17 O -0.57 -25.30 16.59 -3.04 -0.05 -25.35 16 18 C -0.10 -3.94 5.91 71.23 0.42 -3.52 16 19 S -0.18 -9.04 18.55 -56.49 -1.05 -10.08 16 20 C -0.53 -30.91 10.04 67.96 0.68 -30.23 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.05 2.70 5.50 84.86 0.47 3.17 16 23 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 24 Si 0.91 45.13 27.74 68.60 1.90 47.04 16 25 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 28 C 0.11 1.92 7.54 86.49 0.65 2.57 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.71 7.52 -2.39 -0.02 0.69 16 32 H 0.41 1.35 8.02 -92.71 -0.74 0.61 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.08 0.14 7.56 -2.39 -0.02 0.13 16 35 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.10 0.88 8.05 -2.39 -0.02 0.86 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 1.38 7.99 -2.39 -0.02 1.36 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 46 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -80.99 409.02 2.15 -78.83 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.16 Total: 9.70 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 6.15 Total: -3.97 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -4.92 Total: -82.86 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.10 Total: -38.66 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.08 kcal Total: -80.99 2.15 -78.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571938116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.572 kcal (2) G-P(sol) polarization free energy of solvation -80.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds