Wall clock time and date at job start Tue Mar 31 2020 23:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 117.00467 * 2 1 4 4 C 1.38701 * 119.98504 * 180.02562 * 3 2 1 5 5 C 1.38104 * 120.02039 * 180.02562 * 4 3 2 6 6 C 1.38870 * 119.98188 * 359.97438 * 5 4 3 7 7 N 1.39936 * 120.02009 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00016 * 0.02562 * 7 6 5 9 9 C 1.50705 * 109.46609 * 269.99719 * 8 7 6 10 10 O 1.21291 * 120.00365 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99724 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99703 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00535 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99724 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00080 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99911 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 90.00457 * 16 14 12 18 18 H 1.48495 * 109.47131 * 210.00098 * 16 14 12 19 19 H 1.48498 * 109.47154 * 330.00671 * 16 14 12 20 20 C 1.46500 * 119.99658 * 179.97438 * 7 6 5 21 21 C 1.50701 * 109.46797 * 90.00534 * 20 7 6 22 22 C 1.38235 * 119.99808 * 89.99740 * 21 20 7 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99892 * 359.90902 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97486 * 21 20 7 27 27 C 1.38866 * 119.95790 * 0.27101 * 6 5 4 28 28 C 1.38116 * 119.97959 * 359.47637 * 27 6 5 29 29 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46950 * 300.00589 * 1 2 3 31 31 H 1.09002 * 109.47076 * 60.00177 * 1 2 3 32 32 H 1.08001 * 119.98482 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.01311 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47523 * 29.99460 * 8 7 6 35 35 H 1.08999 * 109.47029 * 149.99794 * 8 7 6 36 36 H 0.97003 * 120.00102 * 359.97438 * 11 9 8 37 37 H 0.96999 * 119.99710 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.47763 * 330.00071 * 20 7 6 39 39 H 1.09001 * 109.46756 * 209.99795 * 20 7 6 40 40 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 41 41 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 45 45 H 1.07999 * 120.00510 * 179.70318 * 27 6 5 46 46 H 1.07996 * 119.98791 * 180.25339 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5139 0.0000 6 6 3.3036 3.6789 0.0005 7 7 3.9389 4.9257 0.0016 8 6 5.4019 5.0023 0.0016 9 6 5.9035 5.0274 1.4225 10 8 5.1164 4.9859 2.3444 11 7 7.2267 5.0970 1.6689 12 6 7.6830 5.1204 2.9614 13 1 6.9821 5.0834 3.7823 14 6 9.0473 5.1916 3.2154 15 7 9.9001 5.2371 2.2166 16 14 9.6690 5.2241 4.9767 17 1 9.9068 3.8345 5.4433 18 1 10.9388 5.9914 5.0392 19 1 8.6556 5.8721 5.8475 20 6 3.1410 6.1543 0.0016 21 6 2.8665 6.5749 1.4225 22 6 3.7446 7.4198 2.0751 23 6 3.4925 7.8061 3.3783 24 6 2.3631 7.3462 4.0292 25 6 1.4848 6.5016 3.3764 26 6 1.7363 6.1162 2.0729 27 6 1.9168 3.6057 0.0062 28 6 1.2906 2.3747 0.0004 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0193 0.3777 -0.0014 33 1 5.1380 2.5700 0.0000 34 1 5.8113 4.1330 -0.5129 35 1 5.7181 5.9105 -0.5114 36 1 7.8562 5.1306 0.9316 37 1 10.8524 5.2872 2.3940 38 1 2.1971 5.9747 -0.5129 39 1 3.6899 6.9440 -0.5114 40 1 4.6299 7.7747 1.5684 41 1 4.1788 8.4659 3.8883 42 1 2.1664 7.6476 5.0475 43 1 0.6022 6.1427 3.8849 44 1 1.0503 5.4561 1.5631 45 1 1.3283 4.5112 0.0115 46 1 0.2122 2.3177 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066491954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:34 Heat of formation + Delta-G solvation = 2.143365 kcal Electronic energy + Delta-G solvation = -29726.300942 eV Core-core repulsion = 25774.907452 eV Total energy + Delta-G solvation = -3951.393490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.09840 -39.10771 -38.16402 -37.37939 -35.16474 -33.78105 -31.80802 -31.14128 -30.85928 -30.36209 -29.09414 -27.89273 -26.84228 -25.13999 -23.89090 -22.48324 -22.03598 -21.29318 -20.35766 -19.13765 -18.12760 -17.86463 -16.69616 -16.49059 -16.12707 -15.87698 -15.55747 -14.98394 -14.83224 -14.72365 -14.45233 -14.30583 -13.69529 -13.57456 -13.36389 -13.25311 -13.00997 -12.86724 -12.50855 -12.43033 -12.29391 -12.06869 -11.81054 -11.64617 -11.48999 -11.32566 -11.25147 -11.00171 -10.78211 -10.66543 -10.39188 -10.31687 -10.19764 -9.47191 -9.27562 -8.73211 -8.40854 -8.39353 -8.15275 -7.89468 -6.70697 -6.38480 -3.79101 1.60833 1.74541 1.92142 1.95139 3.18196 3.26872 3.31495 3.39006 3.53451 3.93035 4.12037 4.20314 4.33770 4.89203 4.99468 5.05163 5.06066 5.13599 5.16279 5.21959 5.24674 5.37435 5.39148 5.41385 5.51711 5.57522 5.58639 5.68536 5.69380 5.78911 5.93200 5.94847 6.05316 6.21128 6.24989 6.35230 6.43451 6.47781 6.56076 6.61637 6.87995 6.90363 6.95920 7.04867 7.47460 7.52830 7.57396 7.57558 7.84773 8.09005 8.65179 9.21930 9.57627 10.09920 10.78370 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003975 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.915873 B = 7042.227979 C = 8696.498903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.325 6.325 3 C 0.056 3.944 4 C -0.099 4.099 5 C -0.150 4.150 6 C 0.210 3.790 7 N -0.596 5.596 8 C 0.108 3.892 9 C 0.417 3.583 10 O -0.560 6.560 11 N -0.567 5.567 12 C -0.292 4.292 13 H 0.100 0.900 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.925 3.075 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.168 3.832 21 C -0.090 4.090 22 C -0.068 4.068 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.165 4.165 28 C -0.160 4.160 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.390 0.610 37 H 0.270 0.730 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -0.513 -7.424 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.011 3.989 4 C -0.119 4.119 5 C -0.172 4.172 6 C 0.108 3.892 7 N -0.305 5.305 8 C -0.019 4.019 9 C 0.201 3.799 10 O -0.442 6.442 11 N -0.205 5.205 12 C -0.422 4.422 13 H 0.118 0.882 14 C -0.179 4.179 15 N -0.545 5.545 16 Si 0.753 3.247 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.196 1.196 20 C 0.044 3.956 21 C -0.091 4.091 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.124 4.124 27 C -0.187 4.187 28 C -0.179 4.179 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.324 -0.555 -6.818 17.699 hybrid contribution 0.805 0.091 0.802 1.140 sum -15.518 -0.465 -6.017 16.650 Atomic orbital electron populations 1.22906 0.79477 1.03118 1.00862 1.86029 1.20421 1.27311 1.90148 1.18696 0.92139 0.83809 1.04254 1.20121 0.91196 0.97789 1.02756 1.20539 0.99791 0.90359 1.06530 1.17651 0.91297 0.85313 0.94909 1.46048 1.03534 1.01970 1.78921 1.21276 0.80599 1.03151 0.96863 1.20555 0.83457 0.85035 0.90893 1.90607 1.54789 1.53719 1.45067 1.41895 1.05102 1.64850 1.08693 1.19633 0.91254 1.46958 0.84353 0.88179 1.25202 0.95810 0.97614 0.99284 1.69603 1.02902 1.50953 1.31059 0.85929 0.78115 0.78302 0.82382 1.20488 1.21000 1.19569 1.20289 0.96009 0.86458 0.92800 1.20084 0.94889 0.97058 0.97112 1.20757 0.96881 0.96262 0.94731 1.20984 0.96901 1.00433 0.94915 1.20980 0.95269 0.98476 0.99124 1.20925 0.99631 0.99038 0.95094 1.20893 0.97346 0.99082 0.95044 1.20435 0.92507 0.97289 1.08477 1.20859 0.99110 0.91881 1.06033 0.88943 0.93154 0.93216 0.85650 0.85419 0.89340 0.89545 0.77713 0.91997 0.90327 0.90327 0.87212 0.86843 0.87060 0.87091 0.86971 0.85962 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.47 10.50 -19.75 -0.21 -4.67 16 3 C 0.06 0.84 6.69 -39.24 -0.26 0.58 16 4 C -0.10 -1.55 9.98 -39.46 -0.39 -1.95 16 5 C -0.15 -2.48 9.21 -39.40 -0.36 -2.84 16 6 C 0.21 3.38 6.56 -83.69 -0.55 2.84 16 7 N -0.60 -9.37 2.15 -174.44 -0.38 -9.74 16 8 C 0.11 1.80 5.68 -5.19 -0.03 1.77 16 9 C 0.42 9.17 7.64 -10.98 -0.08 9.08 16 10 O -0.56 -14.15 13.25 5.55 0.07 -14.07 16 11 N -0.57 -13.73 5.29 -10.96 -0.06 -13.79 16 12 C -0.29 -7.96 9.68 -14.93 -0.14 -8.11 16 13 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 16 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.17 2.29 5.40 -5.19 -0.03 2.26 16 21 C -0.09 -1.43 4.48 -104.63 -0.47 -1.90 16 22 C -0.07 -1.17 7.85 -39.58 -0.31 -1.48 16 23 C -0.11 -1.95 10.05 -39.58 -0.40 -2.34 16 24 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 25 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 26 C -0.11 -1.62 9.34 -39.59 -0.37 -1.99 16 27 C -0.16 -2.36 8.48 -39.39 -0.33 -2.70 16 28 C -0.16 -2.17 9.03 -39.46 -0.36 -2.53 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.13 2.12 6.14 -52.49 -0.32 1.80 16 34 H 0.09 1.34 6.20 -51.93 -0.32 1.02 16 35 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 36 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 0.90 6.15 -51.93 -0.32 0.58 16 39 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 40 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.52 5.81 -52.49 -0.30 1.22 16 45 H 0.12 1.54 4.34 -52.49 -0.23 1.31 16 46 H 0.12 1.31 6.29 -52.49 -0.33 0.98 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -32.26 378.33 -8.96 -41.22 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -5.81 Total: 14.98 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.99 Total: -12.19 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.29 Total: -47.10 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.13 Total: -18.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.26 -8.96 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066491954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.366 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds