Wall clock time and date at job start Tue Mar 31 2020 23:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 117.00467 * 2 1 4 4 C 1.38701 * 119.98504 * 180.02562 * 3 2 1 5 5 C 1.38104 * 120.02039 * 180.02562 * 4 3 2 6 6 C 1.38870 * 119.98188 * 359.97438 * 5 4 3 7 7 N 1.39936 * 120.02009 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00016 * 0.02562 * 7 6 5 9 9 C 1.50705 * 109.46609 * 269.99719 * 8 7 6 10 10 O 1.21291 * 120.00365 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99724 * 180.02562 * 9 8 7 12 12 C 1.37094 * 119.99703 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00535 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99724 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00080 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99911 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 90.00457 * 16 14 12 18 18 H 1.48495 * 109.47131 * 210.00098 * 16 14 12 19 19 H 1.48498 * 109.47154 * 330.00671 * 16 14 12 20 20 C 1.46500 * 119.99658 * 179.97438 * 7 6 5 21 21 C 1.50701 * 109.46797 * 90.00534 * 20 7 6 22 22 C 1.38235 * 119.99808 * 89.99740 * 21 20 7 23 23 C 1.38243 * 119.99602 * 179.97438 * 22 21 20 24 24 C 1.38231 * 120.00070 * 0.07188 * 23 22 21 25 25 C 1.38234 * 119.99892 * 359.90902 * 24 23 22 26 26 C 1.38230 * 119.99865 * 269.97486 * 21 20 7 27 27 C 1.38866 * 119.95790 * 0.27101 * 6 5 4 28 28 C 1.38116 * 119.97959 * 359.47637 * 27 6 5 29 29 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46950 * 300.00589 * 1 2 3 31 31 H 1.09002 * 109.47076 * 60.00177 * 1 2 3 32 32 H 1.08001 * 119.98482 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.01311 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47523 * 29.99460 * 8 7 6 35 35 H 1.08999 * 109.47029 * 149.99794 * 8 7 6 36 36 H 0.97003 * 120.00102 * 359.97438 * 11 9 8 37 37 H 0.96999 * 119.99710 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.47763 * 330.00071 * 20 7 6 39 39 H 1.09001 * 109.46756 * 209.99795 * 20 7 6 40 40 H 1.08000 * 120.00616 * 359.70324 * 22 21 20 41 41 H 1.08001 * 119.99556 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99751 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00371 * 0.02562 * 26 21 20 45 45 H 1.07999 * 120.00510 * 179.70318 * 27 6 5 46 46 H 1.07996 * 119.98791 * 180.25339 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2839 -0.0005 5 6 4.0595 2.5139 0.0000 6 6 3.3036 3.6789 0.0005 7 7 3.9389 4.9257 0.0016 8 6 5.4019 5.0023 0.0016 9 6 5.9035 5.0274 1.4225 10 8 5.1164 4.9859 2.3444 11 7 7.2267 5.0970 1.6689 12 6 7.6830 5.1204 2.9614 13 1 6.9821 5.0834 3.7823 14 6 9.0473 5.1916 3.2154 15 7 9.9001 5.2371 2.2166 16 14 9.6690 5.2241 4.9767 17 1 9.9068 3.8345 5.4433 18 1 10.9388 5.9914 5.0392 19 1 8.6556 5.8721 5.8475 20 6 3.1410 6.1543 0.0016 21 6 2.8665 6.5749 1.4225 22 6 3.7446 7.4198 2.0751 23 6 3.4925 7.8061 3.3783 24 6 2.3631 7.3462 4.0292 25 6 1.4848 6.5016 3.3764 26 6 1.7363 6.1162 2.0729 27 6 1.9168 3.6057 0.0062 28 6 1.2906 2.3747 0.0004 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0193 0.3777 -0.0014 33 1 5.1380 2.5700 0.0000 34 1 5.8113 4.1330 -0.5129 35 1 5.7181 5.9105 -0.5114 36 1 7.8562 5.1306 0.9316 37 1 10.8524 5.2872 2.3940 38 1 2.1971 5.9747 -0.5129 39 1 3.6899 6.9440 -0.5114 40 1 4.6299 7.7747 1.5684 41 1 4.1788 8.4659 3.8883 42 1 2.1664 7.6476 5.0475 43 1 0.6022 6.1427 3.8849 44 1 1.0503 5.4561 1.5631 45 1 1.3283 4.5112 0.0115 46 1 0.2122 2.3177 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066491954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:33 Heat of formation + Delta-G solvation = -15.813879 kcal Electronic energy + Delta-G solvation = -29727.079627 eV Core-core repulsion = 25774.907452 eV Total energy + Delta-G solvation = -3952.172175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26044 -40.31231 -39.65435 -38.67483 -36.41260 -35.67469 -33.26437 -32.85168 -32.00277 -31.56115 -30.30977 -29.08695 -27.79154 -26.82249 -25.29458 -23.65261 -23.23660 -22.49722 -21.62941 -20.74339 -19.81687 -19.18381 -17.93958 -17.77031 -17.47501 -17.20091 -16.55701 -16.44546 -16.08998 -16.00077 -15.94212 -15.65056 -15.26117 -15.03550 -14.73413 -14.45673 -14.10657 -14.07247 -13.92800 -13.55159 -13.50624 -13.44732 -13.28525 -13.01874 -12.78672 -12.69213 -12.41185 -12.36572 -12.32697 -12.14530 -11.88177 -11.81758 -11.44052 -11.39857 -10.57113 -9.95829 -9.91979 -9.87614 -9.61998 -9.45616 -8.42482 -7.87926 -5.87155 0.46613 0.53775 0.67749 0.79063 1.35791 1.39212 1.50510 2.17301 2.18056 2.34091 2.59816 2.96821 3.09185 3.26139 3.42345 3.83400 3.96090 4.02873 4.04255 4.22460 4.23244 4.29325 4.32670 4.40966 4.43701 4.48757 4.50149 4.55364 4.58757 4.66936 4.76316 4.78484 4.80123 4.86333 5.11187 5.16323 5.25254 5.26714 5.39957 5.45448 5.49539 5.67188 5.71925 5.76221 5.82759 6.03604 6.27544 6.35433 6.52063 6.69361 6.73566 7.22053 7.67569 8.24692 8.75982 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.003975 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.915873 B = 7042.227979 C = 8696.498903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.343 6.343 3 C 0.052 3.948 4 C -0.117 4.117 5 C -0.170 4.170 6 C 0.190 3.810 7 N -0.597 5.597 8 C 0.118 3.882 9 C 0.422 3.578 10 O -0.591 6.591 11 N -0.581 5.581 12 C -0.316 4.316 13 H 0.072 0.928 14 C -0.013 4.013 15 N -0.923 5.923 16 Si 0.981 3.019 17 H -0.275 1.275 18 H -0.272 1.272 19 H -0.276 1.276 20 C 0.163 3.837 21 C -0.095 4.095 22 C -0.089 4.089 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.113 4.113 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.393 0.607 37 H 0.274 0.726 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.144 0.856 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.375 -0.871 -8.146 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.258 6.258 3 C 0.006 3.994 4 C -0.137 4.137 5 C -0.192 4.192 6 C 0.089 3.911 7 N -0.306 5.306 8 C -0.010 4.010 9 C 0.208 3.792 10 O -0.475 6.475 11 N -0.220 5.220 12 C -0.446 4.446 13 H 0.090 0.910 14 C -0.212 4.212 15 N -0.565 5.565 16 Si 0.806 3.194 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.202 1.202 20 C 0.041 3.959 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.131 4.131 27 C -0.183 4.183 28 C -0.174 4.174 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.226 0.774 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.559 -0.921 -7.565 20.062 hybrid contribution 1.331 0.119 1.028 1.686 sum -17.228 -0.802 -6.536 18.443 Atomic orbital electron populations 1.23241 0.77075 1.05078 1.01926 1.86012 1.22949 1.26870 1.89980 1.18840 0.92036 0.84854 1.03647 1.20253 0.92221 0.97677 1.03516 1.20556 0.99454 0.91260 1.07977 1.17877 0.92247 0.85178 0.95775 1.46107 1.02987 1.02565 1.78923 1.21209 0.81624 1.05196 0.92996 1.21591 0.82350 0.82224 0.93036 1.90580 1.55450 1.54363 1.47073 1.41948 1.06130 1.66146 1.07748 1.19482 0.91380 1.48570 0.85144 0.90997 1.25849 0.95582 0.97108 1.02705 1.69661 1.03143 1.51301 1.32353 0.85093 0.77686 0.78344 0.78231 1.20122 1.19665 1.20153 1.20539 0.97401 0.86139 0.91823 1.20363 0.94667 0.96353 0.98294 1.20840 0.97261 0.97556 0.95161 1.21190 0.97856 1.01283 0.95396 1.21265 0.94984 0.98642 1.00119 1.21320 1.00244 0.98389 0.95345 1.21232 0.97501 0.99087 0.95304 1.20704 0.91821 0.98467 1.07295 1.21201 1.00675 0.91011 1.04516 0.86784 0.92401 0.91656 0.85487 0.86652 0.87904 0.86708 0.77353 0.91648 0.87513 0.88619 0.88313 0.87055 0.85218 0.84491 0.84803 0.83839 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.34 -8.79 10.50 -93.59 -0.98 -9.77 16 3 C 0.05 1.46 6.69 22.49 0.15 1.61 16 4 C -0.12 -3.65 9.98 22.35 0.22 -3.43 16 5 C -0.17 -5.61 9.21 22.39 0.21 -5.41 16 6 C 0.19 5.85 6.56 38.15 0.25 6.10 16 7 N -0.60 -17.84 2.15 -705.79 -1.52 -19.36 16 8 C 0.12 3.81 5.68 85.63 0.49 4.29 16 9 C 0.42 18.87 7.64 87.66 0.67 19.54 16 10 O -0.59 -30.52 13.25 -3.06 -0.04 -30.56 16 11 N -0.58 -28.83 5.29 -306.98 -1.62 -30.46 16 12 C -0.32 -17.75 9.68 84.04 0.81 -16.94 16 13 H 0.07 4.39 7.16 -2.91 -0.02 4.37 16 14 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.99 13.05 21.66 0.28 -49.70 16 16 Si 0.98 43.89 29.55 68.60 2.03 45.92 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.16 4.09 5.40 85.63 0.46 4.55 16 21 C -0.10 -2.92 4.48 -19.87 -0.09 -3.01 16 22 C -0.09 -3.13 7.85 22.27 0.17 -2.96 16 23 C -0.14 -4.86 10.05 22.27 0.22 -4.63 16 24 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 25 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 26 C -0.11 -3.24 9.34 22.27 0.21 -3.04 16 27 C -0.16 -4.15 8.48 22.39 0.19 -3.96 16 28 C -0.16 -3.74 9.03 22.35 0.20 -3.54 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 31 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 32 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.12 3.95 6.14 -2.91 -0.02 3.93 16 34 H 0.10 3.08 6.20 -2.39 -0.01 3.06 16 35 H 0.12 3.08 7.89 -2.39 -0.02 3.07 16 36 H 0.39 18.71 7.90 -92.71 -0.73 17.98 16 37 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.11 2.06 6.15 -2.39 -0.01 2.05 16 39 H 0.10 2.05 7.84 -2.39 -0.02 2.04 16 40 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.11 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 44 H 0.13 3.16 5.81 -2.91 -0.02 3.14 16 45 H 0.14 3.00 4.34 -2.91 -0.01 2.99 16 46 H 0.15 2.63 6.29 -2.91 -0.02 2.61 16 Total: -1.00 -71.03 378.33 4.63 -66.40 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: 0.29 Total: 44.70 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 6.20 Total: -17.16 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -2.86 Total: -99.52 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.02 Total: -40.33 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.03 4.63 -66.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066491954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.582 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds