Wall clock time and date at job start Tue Mar 31 2020 23:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00232 * 2 1 4 4 C 1.52999 * 109.47678 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46905 * 67.18004 * 4 3 2 6 6 C 1.46900 * 110.99871 * 53.27647 * 5 4 3 7 7 C 1.52993 * 109.47317 * 66.04906 * 6 5 4 8 8 O 1.42904 * 109.47592 * 64.99729 * 7 6 5 9 9 C 1.35941 * 117.00398 * 180.02562 * 8 7 6 10 10 C 1.38708 * 120.02930 * 0.27768 * 9 8 7 11 11 C 1.38154 * 119.96768 * 180.25089 * 10 9 8 12 12 C 1.38454 * 120.02963 * 359.47222 * 11 10 9 13 13 F 1.35096 * 119.96939 * 180.29530 * 12 11 10 14 14 C 1.38456 * 120.05919 * 0.27332 * 12 11 10 15 15 C 1.38147 * 120.03148 * 359.97438 * 14 12 11 16 16 C 1.46903 * 111.00352 * 289.32314 * 5 4 3 17 17 C 1.50703 * 109.47124 * 295.81657 * 16 5 4 18 18 O 1.21299 * 119.99802 * 353.45836 * 17 16 5 19 19 N 1.34773 * 120.00082 * 173.46036 * 17 16 5 20 20 C 1.37100 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00235 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99857 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00074 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46918 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46784 * 119.99871 * 24 22 20 27 27 H 1.48491 * 109.47491 * 240.00177 * 24 22 20 28 28 H 1.09000 * 109.46875 * 60.00323 * 1 2 3 29 29 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47258 * 300.00265 * 1 2 3 31 31 H 1.09005 * 109.46950 * 59.99836 * 3 2 1 32 32 H 1.09000 * 109.47106 * 300.00174 * 3 2 1 33 33 H 1.09004 * 109.47165 * 307.18405 * 4 3 2 34 34 H 1.09003 * 109.47595 * 187.17919 * 4 3 2 35 35 H 1.08997 * 109.47424 * 306.04280 * 6 5 4 36 36 H 1.09005 * 109.46995 * 186.04609 * 6 5 4 37 37 H 1.09002 * 109.47176 * 305.00144 * 7 6 5 38 38 H 1.08996 * 109.47389 * 184.99976 * 7 6 5 39 39 H 1.08000 * 120.01762 * 0.02562 * 10 9 8 40 40 H 1.08004 * 119.98646 * 179.74703 * 11 10 9 41 41 H 1.08007 * 119.98258 * 179.97438 * 14 12 11 42 42 H 1.08003 * 120.01439 * 180.02562 * 15 14 12 43 43 H 1.09008 * 109.46666 * 55.80842 * 16 5 4 44 44 H 1.09000 * 109.47389 * 175.81054 * 16 5 4 45 45 H 0.97001 * 119.99707 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00071 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9817 0.6103 -1.2757 6 6 3.4427 1.3698 -2.4118 7 6 4.0437 2.7767 -2.4159 8 8 5.4509 2.6930 -2.6506 9 6 6.1417 3.8633 -2.6846 10 6 5.4792 5.0663 -2.4901 11 6 6.1816 6.2553 -2.5301 12 6 7.5480 6.2456 -2.7532 13 9 8.2347 7.4086 -2.7861 14 6 8.2114 5.0451 -2.9423 15 6 7.5106 3.8551 -2.9079 16 6 3.6162 -0.8093 -1.3706 17 6 4.3465 -1.5883 -0.3071 18 8 5.1855 -1.0410 0.3770 19 7 4.0676 -2.8929 -0.1162 20 6 4.7324 -3.6016 0.8509 21 1 5.4793 -3.1144 1.4601 22 6 4.4452 -4.9469 1.0474 23 7 3.5367 -5.5399 0.3059 24 14 5.3504 -5.9123 2.3656 25 1 6.3158 -5.0206 3.0572 26 1 4.3731 -6.4416 3.3505 27 1 6.0816 -7.0419 1.7377 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8483 0.5370 0.8197 34 1 3.9782 2.1725 0.1291 35 1 2.3586 1.4380 -2.3217 36 1 3.6987 0.8626 -3.3421 37 1 3.8640 3.2515 -1.4513 38 1 3.5785 3.3683 -3.2043 39 1 4.4141 5.0738 -2.3112 40 1 5.6654 7.1925 -2.3828 41 1 9.2773 5.0391 -3.1167 42 1 8.0284 2.9188 -3.0550 43 1 2.5412 -0.9181 -1.2268 44 1 3.8917 -1.1905 -2.3539 45 1 3.3970 -3.3306 -0.6636 46 1 3.3359 -6.4789 0.4433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066567821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:30 Heat of formation + Delta-G solvation = -138.939120 kcal Electronic energy + Delta-G solvation = -29652.465396 eV Core-core repulsion = 25264.184885 eV Total energy + Delta-G solvation = -4388.280511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.79505 -41.16714 -40.52088 -39.19081 -38.25473 -37.09285 -35.78405 -33.20509 -32.31155 -31.54906 -30.95883 -29.84551 -27.86902 -27.09728 -25.67762 -24.96197 -23.78982 -23.09700 -21.39982 -20.72197 -19.76400 -19.33864 -18.35036 -17.99540 -17.73920 -17.58397 -17.28866 -16.90555 -16.57265 -16.48679 -15.97530 -15.81235 -15.74915 -15.64747 -15.32595 -14.99232 -14.89616 -14.56527 -14.31767 -13.96201 -13.62735 -13.51734 -13.43073 -13.32858 -13.11273 -12.93379 -12.83384 -12.77849 -12.38617 -12.32819 -12.31213 -12.10213 -11.96396 -11.69392 -11.52146 -11.40166 -10.50540 -10.17997 -10.15307 -9.91886 -9.04048 -8.96261 -8.41151 -5.88506 0.19913 0.25173 1.37797 1.41470 1.56043 2.17693 2.28317 2.31900 2.61415 2.76389 2.95268 3.27144 3.35826 3.52837 3.72075 3.84832 3.97288 4.05171 4.12433 4.16738 4.20251 4.31546 4.36901 4.40922 4.47021 4.50124 4.56982 4.57922 4.63020 4.71570 4.78670 4.85753 4.88770 4.94025 5.03165 5.14456 5.18965 5.22789 5.28814 5.45374 5.75859 5.93809 6.14131 6.22168 6.34425 6.53885 6.68690 7.20474 7.66428 8.23549 8.76983 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.002479 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.606321 B =11291.516014 C =12774.419720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.022 3.978 4 C 0.053 3.947 5 N -0.522 5.522 6 C 0.047 3.953 7 C 0.061 3.939 8 O -0.314 6.314 9 C 0.115 3.885 10 C -0.183 4.183 11 C -0.110 4.110 12 C 0.033 3.967 13 F -0.151 7.151 14 C -0.113 4.113 15 C -0.142 4.142 16 C 0.050 3.950 17 C 0.453 3.547 18 O -0.619 6.619 19 N -0.578 5.578 20 C -0.325 4.325 21 H 0.075 0.925 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.394 0.606 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 21.764 -9.061 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C -0.055 4.055 4 C -0.076 4.076 5 N -0.246 5.246 6 C -0.080 4.080 7 C -0.014 4.014 8 O -0.228 6.228 9 C 0.069 3.931 10 C -0.202 4.202 11 C -0.128 4.128 12 C 0.013 3.987 13 F -0.130 7.130 14 C -0.131 4.131 15 C -0.161 4.161 16 C -0.080 4.080 17 C 0.240 3.760 18 O -0.505 6.505 19 N -0.215 5.215 20 C -0.455 4.455 21 H 0.093 0.907 22 C -0.215 4.215 23 N -0.565 5.565 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.157 0.843 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.227 0.773 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.461 21.637 -8.658 23.728 hybrid contribution -0.757 -0.613 0.597 1.142 sum -5.217 21.024 -8.061 23.113 Atomic orbital electron populations 1.22893 0.80190 1.03134 1.01004 1.88042 1.21129 1.28599 1.95159 1.23475 0.94804 0.85209 1.02023 1.22328 0.91377 1.00981 0.92878 1.61698 1.59834 1.00692 1.02334 1.22387 0.98093 0.93142 0.94390 1.23111 0.78225 0.97757 1.02268 1.86264 1.22751 1.27852 1.85917 1.19353 0.92232 0.85782 0.95723 1.21358 1.02001 0.90501 1.06303 1.21190 0.91974 1.00155 0.99516 1.17791 0.91063 0.81462 1.08343 1.91459 1.79906 1.46932 1.94659 1.21118 1.01640 0.90122 1.00265 1.20482 0.91791 0.99091 1.04716 1.21962 1.00036 0.88685 0.97341 1.20777 0.85500 0.82418 0.87268 1.90458 1.38024 1.70055 1.52008 1.41904 1.37223 1.08857 1.33533 1.19636 1.19523 0.92895 1.13433 0.90716 1.25992 0.97790 0.97239 1.00494 1.69689 1.33038 1.12852 1.40891 0.84911 0.78040 0.77828 0.77790 1.19969 1.19628 1.19619 0.92038 0.90136 0.93419 0.91995 0.90061 0.92540 0.88369 0.89772 0.89457 0.90983 0.88344 0.82097 0.82379 0.82794 0.84345 0.88777 0.88776 0.77313 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.79 7.57 -148.98 -1.13 -12.92 16 3 C 0.02 0.52 5.68 71.98 0.41 0.93 16 4 C 0.05 1.61 5.17 86.30 0.45 2.06 16 5 N -0.52 -16.53 4.39 -900.77 -3.95 -20.48 16 6 C 0.05 0.98 4.97 86.30 0.43 1.40 16 7 C 0.06 1.06 4.79 71.98 0.35 1.40 16 8 O -0.31 -7.81 10.08 -92.88 -0.94 -8.74 16 9 C 0.12 2.55 6.69 22.49 0.15 2.70 16 10 C -0.18 -3.06 9.04 22.36 0.20 -2.85 16 11 C -0.11 -1.81 10.02 22.30 0.22 -1.58 16 12 C 0.03 0.65 7.30 22.37 0.16 0.81 16 13 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 14 C -0.11 -2.21 10.02 22.30 0.22 -1.99 16 15 C -0.14 -3.14 9.98 22.36 0.22 -2.92 16 16 C 0.05 1.84 5.13 85.56 0.44 2.28 16 17 C 0.45 22.66 7.24 87.66 0.63 23.29 16 18 O -0.62 -35.69 14.18 -3.09 -0.04 -35.73 16 19 N -0.58 -31.14 5.29 -306.98 -1.62 -32.76 16 20 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 21 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.92 -51.35 13.05 21.66 0.28 -51.06 16 24 Si 0.99 44.46 29.55 68.60 2.03 46.48 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.31 5.78 -2.39 -0.01 1.30 16 33 H 0.06 2.37 5.84 -2.38 -0.01 2.36 16 34 H 0.10 2.59 6.70 -2.39 -0.02 2.58 16 35 H 0.08 1.33 5.70 -2.39 -0.01 1.32 16 36 H 0.09 1.81 7.96 -2.38 -0.02 1.79 16 37 H 0.07 1.12 5.98 -2.39 -0.01 1.10 16 38 H 0.10 1.03 7.67 -2.39 -0.02 1.01 16 39 H 0.16 1.74 6.30 -2.91 -0.02 1.73 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.09 3.24 5.08 -2.38 -0.01 3.23 16 44 H 0.09 3.16 7.97 -2.39 -0.02 3.14 16 45 H 0.39 20.35 7.90 -92.71 -0.73 19.61 16 46 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -75.63 380.01 2.11 -73.52 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.29 Total: 35.64 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.42 Total: 8.46 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -5.29 Total: -104.31 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -2.11 Total: -57.40 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.63 2.11 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066567821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.420 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds