Wall clock time and date at job start Tue Mar 31 2020 23:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00047 * 2 1 4 4 C 1.52994 * 109.47195 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47347 * 68.31733 * 4 3 2 6 6 C 1.46499 * 119.99799 * 277.49663 * 5 4 3 7 7 C 1.50706 * 109.46950 * 269.99451 * 6 5 4 8 8 C 1.38671 * 120.41853 * 269.72238 * 7 6 5 9 9 C 1.38626 * 118.41830 * 179.78553 * 8 7 6 10 10 C 1.38225 * 119.16248 * 0.50753 * 9 8 7 11 11 N 1.31860 * 120.76135 * 359.73476 * 10 9 8 12 12 C 1.31877 * 121.72692 * 359.97438 * 11 10 9 13 13 C 1.34783 * 120.00360 * 97.49032 * 5 4 3 14 14 O 1.21545 * 119.99717 * 185.95509 * 13 5 4 15 15 C 1.47886 * 119.99691 * 5.68009 * 13 5 4 16 16 C 1.39920 * 120.02289 * 133.09943 * 15 13 5 17 17 C 1.38324 * 120.35858 * 179.74287 * 16 15 13 18 18 C 1.37754 * 120.41186 * 0.55775 * 17 16 15 19 19 C 1.40749 * 120.03605 * 359.70301 * 18 17 16 20 20 C 1.41441 * 120.17571 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00174 * 149.73474 * 20 19 18 22 22 C 1.39938 * 120.00224 * 329.74078 * 20 19 18 23 23 N 1.30823 * 120.00218 * 168.14300 * 22 20 19 24 24 Si 1.86803 * 119.99589 * 348.14288 * 22 20 19 25 25 H 1.48504 * 109.47028 * 93.25334 * 24 22 20 26 26 H 1.48501 * 109.46857 * 213.25032 * 24 22 20 27 27 H 1.48495 * 109.47500 * 333.25382 * 24 22 20 28 28 C 1.38993 * 120.02647 * 313.38053 * 15 13 5 29 29 H 1.09005 * 109.46703 * 299.99610 * 1 2 3 30 30 H 1.08995 * 109.47742 * 59.99995 * 1 2 3 31 31 H 1.09000 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46719 * 59.99717 * 3 2 1 33 33 H 1.09004 * 109.46928 * 300.00341 * 3 2 1 34 34 H 1.08995 * 109.47435 * 308.31606 * 4 3 2 35 35 H 1.09005 * 109.47193 * 188.31442 * 4 3 2 36 36 H 1.08995 * 109.47332 * 29.99287 * 6 5 4 37 37 H 1.09003 * 109.47287 * 150.00045 * 6 5 4 38 38 H 1.08002 * 120.79450 * 0.02562 * 8 7 6 39 39 H 1.08000 * 120.41887 * 180.22061 * 9 8 7 40 40 H 1.07996 * 119.62046 * 179.75161 * 10 9 8 41 41 H 1.07996 * 119.61944 * 180.02562 * 12 11 10 42 42 H 1.08003 * 119.82003 * 0.02562 * 16 15 13 43 43 H 1.08003 * 119.79820 * 180.25835 * 17 16 15 44 44 H 1.07997 * 119.98085 * 179.72209 * 18 17 16 45 45 H 0.97005 * 120.00045 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.20401 * 359.95071 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9814 0.6376 -1.2844 6 6 3.9551 -0.8092 -1.5128 7 6 5.2705 -1.4090 -1.0870 8 6 6.3140 -1.5274 -1.9924 9 6 7.5073 -2.0812 -1.5551 10 6 7.6129 -2.5036 -0.2432 11 7 6.5977 -2.3798 0.5890 12 6 5.4500 -1.8527 0.2093 13 6 4.4159 1.4654 -2.2553 14 8 4.6832 1.0239 -3.3557 15 6 4.5614 2.9118 -1.9834 16 6 5.7263 3.5831 -2.3709 17 6 5.8676 4.9370 -2.1248 18 6 4.8685 5.6375 -1.4855 19 6 3.6919 4.9780 -1.0835 20 6 2.6640 5.6945 -0.4274 21 1 1.6342 5.3906 -0.5445 22 6 2.9811 6.7974 0.3735 23 7 2.0335 7.5970 0.7906 24 14 4.7577 7.1276 0.8470 25 1 5.3647 8.0652 -0.1318 26 1 4.8046 7.7296 2.2037 27 1 5.5160 5.8509 0.8453 28 6 3.5437 3.6040 -1.3377 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8476 0.5207 0.8054 35 1 3.9780 2.1697 0.1480 36 1 3.1477 -1.2542 -0.9314 37 1 3.7918 -1.0069 -2.5723 38 1 6.2012 -1.1927 -3.0130 39 1 8.3423 -2.1855 -2.2321 40 1 8.5378 -2.9397 0.1043 41 1 4.6409 -1.7674 0.9195 42 1 6.5175 3.0423 -2.8688 43 1 6.7688 5.4470 -2.4315 44 1 4.9881 6.6934 -1.2929 45 1 2.2534 8.3617 1.3455 46 1 2.6445 3.0890 -1.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068160274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:47 Heat of formation + Delta-G solvation = -13.168806 kcal Electronic energy + Delta-G solvation = -29758.445431 eV Core-core repulsion = 25806.387956 eV Total energy + Delta-G solvation = -3952.057476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.48880 -39.61224 -37.80861 -37.45612 -35.47386 -33.75838 -33.00655 -31.85915 -30.70602 -30.17853 -29.53779 -26.70730 -26.07710 -25.28925 -23.66748 -23.24654 -22.70154 -21.73561 -20.79757 -19.22574 -17.69982 -17.10901 -16.82820 -16.49399 -16.18128 -16.01794 -15.88100 -15.66042 -15.18595 -14.81563 -14.71541 -14.29360 -14.05103 -13.62186 -13.57147 -13.27354 -13.00869 -12.83299 -12.73193 -12.45153 -12.19513 -12.07484 -11.94375 -11.84749 -11.65323 -11.52035 -11.19006 -11.14993 -10.76905 -10.62825 -9.99071 -9.88006 -9.84629 -9.55990 -9.53876 -9.50478 -9.27887 -8.96911 -8.50582 -7.90823 -7.81768 -7.05783 -4.66688 1.02379 1.26866 1.97543 2.43171 2.99732 3.11629 3.16491 3.20059 3.35028 3.80323 3.84851 3.88031 4.34911 4.40275 4.74078 4.82712 4.92385 5.03171 5.06620 5.12595 5.20955 5.25782 5.34104 5.38068 5.42924 5.56987 5.61609 5.64698 5.68079 5.76059 5.86204 5.89438 6.02482 6.09497 6.12020 6.23996 6.30060 6.47769 6.62626 6.66032 6.70713 6.89936 7.12924 7.13386 7.31327 7.40713 7.62631 7.67873 7.81413 7.91742 8.17091 8.40756 8.53374 8.62804 9.96364 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003870 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.994673 B = 7233.917012 C = 8349.448833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.038 3.962 4 C 0.102 3.898 5 N -0.600 5.600 6 C 0.159 3.841 7 C -0.151 4.151 8 C -0.055 4.055 9 C -0.176 4.176 10 C 0.094 3.906 11 N -0.489 5.489 12 C 0.111 3.889 13 C 0.569 3.431 14 O -0.546 6.546 15 C -0.097 4.097 16 C -0.189 4.189 17 C -0.082 4.082 18 C -0.218 4.218 19 C 0.087 3.913 20 C -0.445 4.445 21 H 0.092 0.908 22 C 0.083 3.917 23 N -0.809 5.809 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.242 1.242 28 C -0.191 4.191 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.287 0.713 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -14.177 0.756 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.039 4.039 4 C -0.021 4.021 5 N -0.332 5.332 6 C 0.036 3.964 7 C -0.154 4.154 8 C -0.081 4.081 9 C -0.196 4.196 10 C -0.063 4.063 11 N -0.197 5.197 12 C -0.047 4.047 13 C 0.360 3.640 14 O -0.424 6.424 15 C -0.100 4.100 16 C -0.209 4.209 17 C -0.100 4.100 18 C -0.237 4.237 19 C 0.084 3.916 20 C -0.473 4.473 21 H 0.110 0.890 22 C -0.136 4.136 23 N -0.433 5.433 24 Si 0.739 3.261 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.165 1.165 28 C -0.211 4.211 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.257 -14.648 1.185 15.053 hybrid contribution 0.374 1.042 -0.615 1.266 sum 3.631 -13.607 0.571 14.095 Atomic orbital electron populations 1.22704 0.81294 1.02266 1.00188 1.87804 1.19556 1.28293 1.95508 1.23310 0.94155 0.84620 1.01777 1.21975 0.92338 1.02507 0.85270 1.47824 1.64753 1.05544 1.15100 1.20275 0.93036 0.80078 1.03047 1.21385 0.98217 1.00405 0.95382 1.21694 0.92062 0.93880 1.00488 1.22155 0.98717 1.00996 0.97756 1.22731 0.97199 0.96298 0.90113 1.67690 1.00416 1.14202 1.37418 1.22699 0.94832 0.93386 0.93750 1.18951 0.74828 0.86848 0.83407 1.90670 1.50791 1.78035 1.22873 1.19400 0.97309 0.91062 1.02244 1.20310 0.97707 0.94407 1.08524 1.20551 0.97600 0.93745 0.98154 1.21192 0.97327 0.98672 1.06551 1.17656 0.91997 0.91072 0.90879 1.19465 0.95360 1.08507 1.24007 0.89034 1.26137 0.99905 0.93487 0.94075 1.69637 1.35474 1.11328 1.26903 0.86335 0.82402 0.80607 0.76789 1.19694 1.21930 1.16498 1.21594 0.99175 0.94386 1.05936 0.94038 0.94115 0.89998 0.91495 0.91818 0.90240 0.86141 0.88115 0.89173 0.84410 0.84975 0.83052 0.82831 0.88142 0.88098 0.87961 0.90289 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.93 9.02 -35.23 -0.32 -5.25 16 3 C 0.04 0.52 5.27 37.15 0.20 0.72 16 4 C 0.10 1.45 5.33 -4.05 -0.02 1.42 16 5 N -0.60 -9.28 2.46 -176.16 -0.43 -9.72 16 6 C 0.16 2.12 5.48 -5.19 -0.03 2.09 16 7 C -0.15 -1.97 5.48 -104.48 -0.57 -2.54 16 8 C -0.05 -0.71 9.86 -39.28 -0.39 -1.10 16 9 C -0.18 -1.98 10.11 -39.44 -0.40 -2.38 16 10 C 0.09 1.07 11.18 -17.54 -0.20 0.88 16 11 N -0.49 -6.51 10.36 -13.26 -0.14 -6.65 16 12 C 0.11 1.40 10.86 -17.55 -0.19 1.21 16 13 C 0.57 10.76 7.25 -12.31 -0.09 10.67 16 14 O -0.55 -11.37 16.51 5.33 0.09 -11.29 16 15 C -0.10 -1.99 5.04 -105.04 -0.53 -2.52 16 16 C -0.19 -3.91 9.71 -38.92 -0.38 -4.29 16 17 C -0.08 -1.70 10.01 -39.73 -0.40 -2.09 16 18 C -0.22 -4.91 6.94 -38.81 -0.27 -5.18 16 19 C 0.09 2.01 5.16 -106.87 -0.55 1.46 16 20 C -0.44 -11.00 9.61 -37.73 -0.36 -11.36 16 21 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 22 C 0.08 2.02 5.47 -17.34 -0.09 1.93 16 23 N -0.81 -20.33 13.93 55.55 0.77 -19.56 16 24 Si 0.91 19.48 24.37 -169.99 -4.14 15.34 16 25 H -0.27 -5.67 6.70 56.52 0.38 -5.29 16 26 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.24 -5.22 6.57 56.52 0.37 -4.85 16 28 C -0.19 -3.99 7.17 -38.44 -0.28 -4.27 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.96 6.20 -51.93 -0.32 0.64 16 34 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.12 1.94 5.15 -51.93 -0.27 1.67 16 36 H 0.10 1.21 6.48 -51.93 -0.34 0.87 16 37 H 0.09 1.28 7.30 -51.93 -0.38 0.90 16 38 H 0.14 1.85 8.01 -52.49 -0.42 1.43 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 44 H 0.10 2.29 4.26 -52.49 -0.22 2.07 16 45 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 46 H 0.12 2.21 3.75 -52.49 -0.20 2.01 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -28.54 376.45 -7.92 -36.45 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.98 Total: 8.91 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.43 Total: -13.92 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.20 Total: -35.92 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.23 Total: -16.53 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.14 Total: 15.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.54 -7.92 -36.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068160274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.286 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds