Wall clock time and date at job start Tue Mar 31 2020 23:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00047 * 2 1 4 4 C 1.52994 * 109.47195 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47347 * 68.31733 * 4 3 2 6 6 C 1.46499 * 119.99799 * 277.49663 * 5 4 3 7 7 C 1.50706 * 109.46950 * 269.99451 * 6 5 4 8 8 C 1.38671 * 120.41853 * 269.72238 * 7 6 5 9 9 C 1.38626 * 118.41830 * 179.78553 * 8 7 6 10 10 C 1.38225 * 119.16248 * 0.50753 * 9 8 7 11 11 N 1.31860 * 120.76135 * 359.73476 * 10 9 8 12 12 C 1.31877 * 121.72692 * 359.97438 * 11 10 9 13 13 C 1.34783 * 120.00360 * 97.49032 * 5 4 3 14 14 O 1.21545 * 119.99717 * 185.95509 * 13 5 4 15 15 C 1.47886 * 119.99691 * 5.68009 * 13 5 4 16 16 C 1.39920 * 120.02289 * 133.09943 * 15 13 5 17 17 C 1.38324 * 120.35858 * 179.74287 * 16 15 13 18 18 C 1.37754 * 120.41186 * 0.55775 * 17 16 15 19 19 C 1.40749 * 120.03605 * 359.70301 * 18 17 16 20 20 C 1.41441 * 120.17571 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00174 * 149.73474 * 20 19 18 22 22 C 1.39938 * 120.00224 * 329.74078 * 20 19 18 23 23 N 1.30823 * 120.00218 * 168.14300 * 22 20 19 24 24 Si 1.86803 * 119.99589 * 348.14288 * 22 20 19 25 25 H 1.48504 * 109.47028 * 93.25334 * 24 22 20 26 26 H 1.48501 * 109.46857 * 213.25032 * 24 22 20 27 27 H 1.48495 * 109.47500 * 333.25382 * 24 22 20 28 28 C 1.38993 * 120.02647 * 313.38053 * 15 13 5 29 29 H 1.09005 * 109.46703 * 299.99610 * 1 2 3 30 30 H 1.08995 * 109.47742 * 59.99995 * 1 2 3 31 31 H 1.09000 * 109.46960 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46719 * 59.99717 * 3 2 1 33 33 H 1.09004 * 109.46928 * 300.00341 * 3 2 1 34 34 H 1.08995 * 109.47435 * 308.31606 * 4 3 2 35 35 H 1.09005 * 109.47193 * 188.31442 * 4 3 2 36 36 H 1.08995 * 109.47332 * 29.99287 * 6 5 4 37 37 H 1.09003 * 109.47287 * 150.00045 * 6 5 4 38 38 H 1.08002 * 120.79450 * 0.02562 * 8 7 6 39 39 H 1.08000 * 120.41887 * 180.22061 * 9 8 7 40 40 H 1.07996 * 119.62046 * 179.75161 * 10 9 8 41 41 H 1.07996 * 119.61944 * 180.02562 * 12 11 10 42 42 H 1.08003 * 119.82003 * 0.02562 * 16 15 13 43 43 H 1.08003 * 119.79820 * 180.25835 * 17 16 15 44 44 H 1.07997 * 119.98085 * 179.72209 * 18 17 16 45 45 H 0.97005 * 120.00045 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.20401 * 359.95071 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9814 0.6376 -1.2844 6 6 3.9551 -0.8092 -1.5128 7 6 5.2705 -1.4090 -1.0870 8 6 6.3140 -1.5274 -1.9924 9 6 7.5073 -2.0812 -1.5551 10 6 7.6129 -2.5036 -0.2432 11 7 6.5977 -2.3798 0.5890 12 6 5.4500 -1.8527 0.2093 13 6 4.4159 1.4654 -2.2553 14 8 4.6832 1.0239 -3.3557 15 6 4.5614 2.9118 -1.9834 16 6 5.7263 3.5831 -2.3709 17 6 5.8676 4.9370 -2.1248 18 6 4.8685 5.6375 -1.4855 19 6 3.6919 4.9780 -1.0835 20 6 2.6640 5.6945 -0.4274 21 1 1.6342 5.3906 -0.5445 22 6 2.9811 6.7974 0.3735 23 7 2.0335 7.5970 0.7906 24 14 4.7577 7.1276 0.8470 25 1 5.3647 8.0652 -0.1318 26 1 4.8046 7.7296 2.2037 27 1 5.5160 5.8509 0.8453 28 6 3.5437 3.6040 -1.3377 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8476 0.5207 0.8054 35 1 3.9780 2.1697 0.1480 36 1 3.1477 -1.2542 -0.9314 37 1 3.7918 -1.0069 -2.5723 38 1 6.2012 -1.1927 -3.0130 39 1 8.3423 -2.1855 -2.2321 40 1 8.5378 -2.9397 0.1043 41 1 4.6409 -1.7674 0.9195 42 1 6.5175 3.0423 -2.8688 43 1 6.7688 5.4470 -2.4315 44 1 4.9881 6.6934 -1.2929 45 1 2.2534 8.3617 1.3455 46 1 2.6445 3.0890 -1.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068160274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:46 Heat of formation + Delta-G solvation = -28.864838 kcal Electronic energy + Delta-G solvation = -29759.126062 eV Core-core repulsion = 25806.387956 eV Total energy + Delta-G solvation = -3952.738107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.69188 -40.79722 -39.14365 -38.84860 -36.74505 -35.53450 -34.10324 -32.84644 -32.44497 -31.65676 -30.72012 -27.78116 -27.21782 -26.93860 -24.72095 -24.54510 -23.85462 -22.99730 -22.44180 -20.71073 -19.21657 -18.19762 -18.09197 -17.89670 -17.38037 -17.20079 -17.04417 -16.97576 -16.49259 -16.23001 -15.76791 -15.68196 -15.47235 -14.92950 -14.72293 -14.54860 -14.28272 -14.24455 -13.97181 -13.84896 -13.64053 -13.44320 -13.14650 -13.00551 -12.96975 -12.81097 -12.62098 -12.53311 -12.29387 -12.05255 -11.67438 -11.53551 -11.22717 -10.94579 -10.69554 -10.59746 -10.49659 -9.99300 -9.78211 -9.59869 -9.52544 -8.87710 -6.53979 0.09012 0.31149 0.31714 0.72306 1.28338 1.41945 1.49083 1.71824 2.01253 2.11440 2.59308 2.80473 2.91715 3.40694 3.50998 3.53905 3.83079 3.93418 4.01347 4.07189 4.08134 4.09298 4.25961 4.34524 4.41465 4.46351 4.52066 4.56283 4.58689 4.61716 4.66446 4.77378 4.83119 4.86239 4.89485 4.92342 4.95348 5.14654 5.18941 5.32764 5.39752 5.51036 5.61889 5.72637 5.75902 5.84366 6.06938 6.13602 6.30302 6.31549 6.62650 6.78611 6.99806 7.07547 8.19618 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.003870 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.994673 B = 7233.917012 C = 8349.448833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.046 3.954 4 C 0.102 3.898 5 N -0.590 5.590 6 C 0.164 3.836 7 C -0.160 4.160 8 C -0.070 4.070 9 C -0.173 4.173 10 C 0.092 3.908 11 N -0.509 5.509 12 C 0.107 3.893 13 C 0.567 3.433 14 O -0.570 6.570 15 C -0.105 4.105 16 C -0.185 4.185 17 C -0.082 4.082 18 C -0.230 4.230 19 C 0.071 3.929 20 C -0.471 4.471 21 H 0.064 0.936 22 C 0.050 3.950 23 N -0.849 5.849 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.283 1.283 27 H -0.245 1.245 28 C -0.185 4.185 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.293 0.707 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -15.856 1.155 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.320 5.320 6 C 0.042 3.958 7 C -0.163 4.163 8 C -0.097 4.097 9 C -0.192 4.192 10 C -0.065 4.065 11 N -0.218 5.218 12 C -0.050 4.050 13 C 0.357 3.643 14 O -0.450 6.450 15 C -0.108 4.108 16 C -0.205 4.205 17 C -0.100 4.100 18 C -0.250 4.250 19 C 0.069 3.931 20 C -0.501 4.501 21 H 0.082 0.918 22 C -0.165 4.165 23 N -0.476 5.476 24 Si 0.784 3.216 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.168 1.168 28 C -0.204 4.204 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.199 0.801 41 H 0.186 0.814 42 H 0.132 0.868 43 H 0.151 0.849 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.144 -16.348 1.602 17.213 hybrid contribution -0.186 1.356 -0.828 1.600 sum 4.958 -14.992 0.774 15.809 Atomic orbital electron populations 1.22896 0.79925 1.03853 1.00332 1.87778 1.20981 1.27324 1.95517 1.23115 0.93732 0.85169 1.01158 1.22005 0.92725 1.02063 0.85249 1.47819 1.63178 1.06288 1.14685 1.20338 0.94135 0.78545 1.02799 1.21307 0.97935 1.01272 0.95819 1.21786 0.93043 0.94640 1.00205 1.22436 0.98749 0.99838 0.98224 1.23266 0.97767 0.95485 0.89997 1.67741 1.00996 1.14817 1.38208 1.22905 0.95265 0.93118 0.93742 1.18734 0.75297 0.86519 0.83728 1.90659 1.52286 1.78212 1.23831 1.19663 0.97116 0.92320 1.01706 1.20645 0.97882 0.94671 1.07311 1.20871 0.98259 0.93769 0.97142 1.21331 0.97594 0.98953 1.07085 1.17783 0.92218 0.91912 0.91199 1.19417 0.94584 1.10008 1.26053 0.91816 1.26725 1.02906 0.93105 0.93716 1.69671 1.37008 1.12382 1.28510 0.85593 0.78606 0.80353 0.77041 1.18767 1.21009 1.16820 1.21745 0.99765 0.93758 1.05150 0.93310 0.94595 0.87721 0.90782 0.93790 0.87840 0.87999 0.86490 0.90165 0.85382 0.82371 0.80127 0.81427 0.86773 0.84861 0.87959 0.89610 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -9.35 9.02 -148.98 -1.34 -10.69 16 3 C 0.05 1.20 5.27 71.98 0.38 1.58 16 4 C 0.10 2.78 5.33 86.38 0.46 3.24 16 5 N -0.59 -17.63 2.46 -829.53 -2.04 -19.68 16 6 C 0.16 4.18 5.48 85.64 0.47 4.65 16 7 C -0.16 -3.94 5.48 -19.77 -0.11 -4.05 16 8 C -0.07 -1.72 9.86 22.47 0.22 -1.50 16 9 C -0.17 -3.46 10.11 22.36 0.23 -3.23 16 10 C 0.09 1.84 11.18 84.69 0.95 2.79 16 11 N -0.51 -12.38 10.36 -195.85 -2.03 -14.41 16 12 C 0.11 2.49 10.86 84.67 0.92 3.41 16 13 C 0.57 21.05 7.25 86.80 0.63 21.68 16 14 O -0.57 -23.43 16.51 -3.86 -0.06 -23.50 16 15 C -0.11 -4.22 5.04 -20.13 -0.10 -4.32 16 16 C -0.19 -7.32 9.71 22.70 0.22 -7.10 16 17 C -0.08 -3.23 10.01 22.18 0.22 -3.01 16 18 C -0.23 -10.16 6.94 22.77 0.16 -10.01 16 19 C 0.07 3.34 5.16 -21.32 -0.11 3.23 16 20 C -0.47 -24.13 9.61 23.47 0.23 -23.91 16 21 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 22 C 0.05 2.50 5.47 85.25 0.47 2.97 16 23 N -0.85 -43.90 13.93 21.82 0.30 -43.60 16 24 Si 0.96 39.85 24.37 68.60 1.67 41.52 16 25 H -0.26 -10.42 6.70 99.48 0.67 -9.75 16 26 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.24 -10.17 6.57 99.48 0.65 -9.51 16 28 C -0.18 -7.75 7.17 23.01 0.16 -7.58 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.34 6.20 -2.38 -0.01 1.32 16 34 H 0.10 2.34 8.12 -2.39 -0.02 2.32 16 35 H 0.10 3.21 5.15 -2.38 -0.01 3.20 16 36 H 0.12 2.58 6.48 -2.39 -0.02 2.57 16 37 H 0.08 2.23 7.30 -2.39 -0.02 2.21 16 38 H 0.13 3.37 8.01 -2.91 -0.02 3.34 16 39 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.10 4.48 4.26 -2.91 -0.01 4.47 16 45 H 0.29 13.72 8.30 -92.70 -0.77 12.95 16 46 H 0.13 4.96 3.75 -2.91 -0.01 4.95 16 Total: -1.00 -61.61 376.45 4.05 -57.56 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.91 Total: 32.20 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 6.64 Total: -19.42 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -3.77 Total: -77.68 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.41 Total: -34.19 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.67 Total: 41.52 kcal Total: -61.61 4.05 -57.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068160274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.699 kcal (2) G-P(sol) polarization free energy of solvation -61.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds