Wall clock time and date at job start Tue Mar 31 2020 22:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 N 1.46504 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99954 * 274.99993 * 5 4 3 7 7 S 1.65603 * 119.99812 * 95.00427 * 5 4 3 8 8 O 1.42098 * 104.27543 * 206.07022 * 7 5 4 9 9 O 1.42108 * 104.27473 * 333.92535 * 7 5 4 10 10 C 1.81402 * 104.45020 * 89.99715 * 7 5 4 11 11 C 1.52995 * 109.46914 * 180.02562 * 10 7 5 12 12 C 1.53001 * 109.47159 * 179.97438 * 11 10 7 13 13 C 1.50695 * 109.47371 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99746 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47160 * 90.00536 * 17 15 13 19 19 H 1.48505 * 109.46995 * 210.00106 * 17 15 13 20 20 H 1.48496 * 109.47487 * 329.99949 * 17 15 13 21 21 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 22 22 C 1.38914 * 120.07317 * 359.97438 * 21 2 1 23 23 C 1.38100 * 119.92419 * 179.97438 * 22 21 2 24 24 C 1.38288 * 120.07489 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.14964 * 0.27921 * 24 23 22 26 26 C 1.38104 * 120.07445 * 359.44998 * 25 24 23 27 27 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 28 28 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 29 29 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 30 30 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 31 31 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 32 32 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 33 33 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 34 34 H 1.09007 * 109.47030 * 90.00451 * 6 5 4 35 35 H 1.09001 * 109.46923 * 210.00135 * 6 5 4 36 36 H 1.08994 * 109.47336 * 330.00206 * 6 5 4 37 37 H 1.09001 * 109.46640 * 300.00245 * 10 7 5 38 38 H 1.09000 * 109.46734 * 59.99957 * 10 7 5 39 39 H 1.08998 * 109.47102 * 300.00128 * 11 10 7 40 40 H 1.09000 * 109.47514 * 60.00362 * 11 10 7 41 41 H 1.09006 * 109.46998 * 300.00329 * 12 11 10 42 42 H 1.09004 * 109.47077 * 59.99726 * 12 11 10 43 43 H 0.97006 * 120.00376 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.03435 * 359.97438 * 22 21 2 45 45 H 1.08000 * 119.95830 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.92149 * 179.97438 * 24 23 22 47 47 H 1.08001 * 119.96059 * 179.69879 * 25 24 23 48 48 H 1.07999 * 120.04050 * 180.27354 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1855 2.9790 -1.4424 6 6 2.4577 4.2455 -1.3316 7 16 4.8368 2.9811 -1.5676 8 8 5.2345 4.1908 -0.9371 9 8 5.2294 1.7192 -1.0452 10 6 5.1553 3.0584 -3.3518 11 6 6.6649 3.0655 -3.6004 12 6 6.9337 3.1301 -5.1052 13 6 8.4206 3.1378 -5.3502 14 1 9.1054 3.0999 -4.5160 15 6 8.9066 3.1921 -6.6393 16 7 8.0727 3.2377 -7.6551 17 14 10.7498 3.2008 -6.9429 18 1 11.2349 1.8044 -7.0836 19 1 11.0427 3.9544 -8.1885 20 1 11.4370 3.8506 -5.7981 21 6 2.1634 -1.2096 -0.0005 22 6 1.4704 -2.4135 -0.0005 23 6 2.1641 -3.6077 -0.0016 24 6 3.5470 -3.6058 -0.0032 25 6 4.2399 -2.4092 0.0021 26 6 3.5525 -1.2114 -0.0025 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0416 0.9509 -1.9563 33 1 1.5001 1.8408 -1.9562 34 1 2.3549 4.5147 -0.2803 35 1 3.0078 5.0276 -1.8548 36 1 1.4690 4.1366 -1.7771 37 1 4.7114 2.1898 -3.8380 38 1 4.7151 3.9680 -3.7603 39 1 7.1092 3.9339 -3.1140 40 1 7.1048 2.1557 -3.1920 41 1 6.4894 2.2615 -5.5913 42 1 6.4938 4.0398 -5.5142 43 1 8.4146 3.2763 -8.5621 44 1 0.3904 -2.4156 0.0003 45 1 1.6259 -4.5440 -0.0020 46 1 4.0869 -4.5412 -0.0036 47 1 5.3199 -2.4113 0.0057 48 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068917564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:57 Heat of formation + Delta-G solvation = -63.448590 kcal Electronic energy + Delta-G solvation = -27613.460481 eV Core-core repulsion = 23794.666661 eV Total energy + Delta-G solvation = -3818.793819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.51324 -38.33691 -38.08002 -37.06096 -36.51157 -36.40537 -34.19126 -32.10152 -31.16321 -30.10908 -29.68530 -27.52604 -26.12763 -25.54090 -24.02280 -22.91610 -22.34912 -21.43623 -19.92871 -18.84050 -18.60424 -18.43534 -17.51944 -17.29912 -16.63007 -16.49475 -16.38345 -16.16430 -15.67578 -15.47258 -15.14136 -14.69000 -14.65446 -14.51210 -14.29629 -14.12874 -14.06772 -13.58156 -13.50213 -13.40427 -13.28060 -13.19121 -13.08691 -13.01779 -12.80565 -12.77653 -12.64951 -12.50591 -12.20467 -12.17649 -11.93698 -11.79203 -11.55578 -11.41159 -11.15000 -10.84873 -10.59883 -10.04931 -9.75810 -8.24875 -8.15660 -6.36187 -0.81405 0.60350 0.75457 1.38816 1.39717 1.51110 1.58622 2.26472 2.38231 2.75310 3.05597 3.08581 3.11740 3.57901 3.77763 3.85567 4.00889 4.03472 4.10301 4.21391 4.34382 4.38047 4.46285 4.49273 4.57558 4.61287 4.68133 4.69468 4.74629 4.78124 4.89283 4.93612 4.95647 4.98972 5.00176 5.03389 5.07258 5.24929 5.42035 5.44150 5.54659 5.59282 5.69506 5.76486 5.83718 6.04225 6.16957 6.39932 6.62116 6.79183 7.33292 8.86773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.002728 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.334927 B =10262.900039 C =11727.188638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.633 5.633 3 C 0.104 3.896 4 C 0.106 3.894 5 N -0.996 5.996 6 C 0.083 3.917 7 S 2.619 3.381 8 O -0.985 6.985 9 O -0.977 6.977 10 C -0.612 4.612 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.554 4.554 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.200 3.800 22 C -0.202 4.202 23 C -0.080 4.080 24 C -0.190 4.190 25 C -0.091 4.091 26 C -0.219 4.219 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.131 0.869 47 H 0.118 0.882 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.389 -6.813 16.255 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.344 5.344 3 C -0.021 4.021 4 C -0.021 4.021 5 N -0.835 5.835 6 C -0.062 4.062 7 S 2.714 3.286 8 O -0.975 6.975 9 O -0.968 6.968 10 C -0.742 4.742 11 C -0.145 4.145 12 C -0.006 4.006 13 C -0.592 4.592 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C 0.098 3.902 22 C -0.224 4.224 23 C -0.099 4.099 24 C -0.210 4.210 25 C -0.110 4.110 26 C -0.241 4.241 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.149 0.851 47 H 0.136 0.864 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.961 -6.633 16.829 27.687 hybrid contribution 1.092 0.168 -1.220 1.646 sum -19.869 -6.465 15.609 26.081 Atomic orbital electron populations 1.21836 0.77551 1.03962 1.01940 1.46461 1.05846 1.01899 1.80233 1.21856 0.97694 0.85668 0.96888 1.21875 0.98766 0.83298 0.98174 1.57283 1.24544 1.12829 1.88847 1.21783 0.98720 0.82553 1.03100 1.04696 0.73187 0.73077 0.77596 1.93530 1.81647 1.48491 1.73806 1.93531 1.81626 1.44033 1.77563 1.30560 1.05288 1.12723 1.25603 1.21302 0.90782 1.01955 1.00430 1.18950 0.95502 0.95810 0.90357 1.21734 0.93557 1.51086 0.92788 0.92180 1.25944 1.03157 0.94495 0.95940 1.70068 1.36511 1.51191 0.99196 0.85472 0.79296 0.78556 0.77927 1.19690 1.20404 1.18855 1.18038 0.90971 0.86873 0.94307 1.20944 1.00567 0.90681 1.10242 1.21217 0.94015 0.98234 0.96388 1.21179 0.95077 0.97872 1.06868 1.21134 1.00044 0.92594 0.97207 1.21087 0.93344 0.99384 1.10268 0.92790 0.89623 0.90548 0.88253 0.92213 0.91306 0.87178 0.91718 0.90998 0.87794 0.84265 0.83846 0.91599 0.91672 0.98061 0.97875 0.92573 0.83935 0.83793 0.85117 0.86355 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.19 127.77 1.30 2.18 16 2 N -0.63 -11.07 3.01 -722.18 -2.17 -13.25 16 3 C 0.10 1.89 5.48 86.38 0.47 2.37 16 4 C 0.11 1.87 5.60 86.38 0.48 2.35 16 5 N -1.00 -19.64 3.12 -539.14 -1.68 -21.32 16 6 C 0.08 1.16 10.24 127.77 1.31 2.46 16 7 S 2.62 75.40 5.32 -56.49 -0.30 75.10 16 8 O -0.98 -33.63 17.09 -127.65 -2.18 -35.81 16 9 O -0.98 -32.97 15.92 -127.65 -2.03 -35.00 16 10 C -0.61 -18.85 6.18 71.98 0.44 -18.41 16 11 C -0.11 -4.39 5.16 30.59 0.16 -4.23 16 12 C 0.03 1.68 4.97 29.85 0.15 1.83 16 13 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 0.17 5.46 84.66 0.46 0.63 16 16 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 17 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.20 4.48 6.55 38.21 0.25 4.73 16 22 C -0.20 -3.79 9.21 22.40 0.21 -3.58 16 23 C -0.08 -1.48 10.04 22.25 0.22 -1.25 16 24 C -0.19 -4.07 10.04 22.29 0.22 -3.84 16 25 C -0.09 -2.34 10.04 22.25 0.22 -2.11 16 26 C -0.22 -5.93 9.21 22.40 0.21 -5.72 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.51 8.07 -2.39 -0.02 0.50 16 29 H 0.08 0.65 6.20 -2.39 -0.01 0.63 16 30 H 0.10 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.06 1.42 5.96 -2.38 -0.01 1.41 16 32 H 0.07 1.48 7.60 -2.39 -0.02 1.47 16 33 H 0.11 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.07 1.06 7.79 -2.39 -0.02 1.04 16 36 H 0.10 0.78 7.94 -2.39 -0.02 0.76 16 37 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 38 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 44 H 0.14 1.89 6.14 -2.91 -0.02 1.87 16 45 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 47 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 48 H 0.12 3.63 5.30 -2.91 -0.02 3.62 16 Total: -1.00 -76.57 402.48 1.22 -75.35 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.93 Total: 18.54 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 6.35 Total: -54.28 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -3.57 Total: -90.44 kcal Atomic # 8 Polarization: -66.60 SS G_CDS: -4.21 Total: -70.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 75.40 SS G_CDS: -0.30 Total: 75.10 kcal Total: -76.57 1.22 -75.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068917564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.901 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds