Wall clock time and date at job start Tue Mar 31 2020 22:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00335 * 2 1 4 4 C 1.46899 * 111.00325 * 123.95518 * 2 1 3 5 5 H 1.09003 * 109.47340 * 36.94738 * 4 2 1 6 6 C 1.53005 * 109.47178 * 276.95303 * 4 2 1 7 7 N 1.46497 * 109.47274 * 69.57752 * 6 4 2 8 8 S 1.65599 * 119.99962 * 166.16735 * 7 6 4 9 9 O 1.42094 * 104.27630 * 181.34761 * 8 7 6 10 10 O 1.42102 * 104.27285 * 309.20200 * 8 7 6 11 11 C 1.81400 * 104.45099 * 65.27373 * 8 7 6 12 12 C 1.52997 * 109.47203 * 180.02562 * 11 8 7 13 13 C 1.50697 * 109.47249 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99924 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00176 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99708 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47304 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47281 * 119.99762 * 17 15 13 20 20 H 1.48500 * 109.46890 * 239.99888 * 17 15 13 21 21 C 1.52999 * 109.47570 * 156.94649 * 4 2 1 22 22 C 1.50695 * 109.47356 * 299.83047 * 21 4 2 23 23 C 1.38242 * 119.99609 * 275.15332 * 22 21 4 24 24 C 1.38232 * 120.00036 * 179.76471 * 23 22 21 25 25 C 1.38237 * 119.99739 * 0.50571 * 24 23 22 26 26 C 1.38237 * 120.00120 * 359.75017 * 25 24 23 27 27 C 1.38231 * 120.00416 * 95.42984 * 22 21 4 28 28 H 1.09000 * 109.46869 * 320.09985 * 1 2 3 29 29 H 1.09000 * 109.47487 * 80.09794 * 1 2 3 30 30 H 1.09001 * 109.47264 * 200.10522 * 1 2 3 31 31 H 1.08999 * 109.46878 * 176.79904 * 3 2 1 32 32 H 1.09001 * 109.46733 * 296.80045 * 3 2 1 33 33 H 1.08999 * 109.46988 * 56.79998 * 3 2 1 34 34 H 1.09003 * 109.46801 * 309.57812 * 6 4 2 35 35 H 1.08996 * 109.47051 * 189.58009 * 6 4 2 36 36 H 0.96996 * 119.99955 * 346.43955 * 7 6 4 37 37 H 1.08997 * 109.46939 * 299.99905 * 11 8 7 38 38 H 1.08999 * 109.47043 * 59.99828 * 11 8 7 39 39 H 1.09004 * 109.46947 * 300.00181 * 12 11 8 40 40 H 1.08999 * 109.47348 * 59.99909 * 12 11 8 41 41 H 0.97004 * 120.00062 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46646 * 59.82861 * 21 4 2 43 43 H 1.09002 * 109.47472 * 179.81816 * 21 4 2 44 44 H 1.07999 * 119.99829 * 359.97438 * 23 22 21 45 45 H 1.07999 * 120.00308 * 180.23349 * 24 23 22 46 46 H 1.08000 * 119.99896 * 179.71972 * 25 24 23 47 47 H 1.08006 * 120.00151 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.99857 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3590 -1.6323 1.3181 6 6 2.0152 0.1209 2.3842 7 7 0.6411 0.3821 2.8196 8 16 0.3552 1.0186 4.3213 9 8 -1.0610 1.1013 4.4031 10 8 1.0923 0.1823 5.2025 11 6 1.0870 2.6772 4.2568 12 6 0.8862 3.3760 5.6029 13 6 1.4947 4.7536 5.5495 14 1 1.9762 5.0966 4.6457 15 6 1.4359 5.5765 6.6543 16 7 0.8483 5.1594 7.7543 17 14 2.1896 7.2844 6.5878 18 1 2.7850 7.5109 5.2463 19 1 1.1365 8.3005 6.8404 20 1 3.2471 7.3994 7.6240 21 6 3.4174 -1.2348 0.8225 22 6 3.3973 -2.1117 -0.4029 23 6 3.1180 -3.4603 -0.2831 24 6 3.0947 -4.2639 -1.4076 25 6 3.3611 -3.7209 -2.6507 26 6 3.6455 -2.3734 -2.7698 27 6 3.6637 -1.5688 -1.6459 28 1 -0.3633 0.7884 0.6592 29 1 -0.3634 0.1767 -1.0123 30 1 -0.3634 -0.9650 0.3533 31 1 3.0836 1.3428 0.0574 32 1 1.6931 1.8766 -0.9173 33 1 1.6004 1.9123 0.8599 34 1 2.5080 1.0647 2.1508 35 1 2.5590 -0.3855 3.1817 36 1 -0.1015 0.1784 2.2297 37 1 2.1532 2.5958 4.0456 38 1 0.6040 3.2571 3.4703 39 1 -0.1800 3.4573 5.8146 40 1 1.3695 2.7960 6.3891 41 1 0.8073 5.7383 8.5317 42 1 4.0532 -0.3686 0.6390 43 1 3.8092 -1.8004 1.6678 44 1 2.9146 -3.8854 0.6886 45 1 2.8729 -5.3167 -1.3146 46 1 3.3474 -4.3496 -3.5287 47 1 3.8540 -1.9492 -3.7410 48 1 3.8867 -0.5162 -1.7388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:44 Heat of formation + Delta-G solvation = -46.642274 kcal Electronic energy + Delta-G solvation = -27822.694592 eV Core-core repulsion = 24004.629549 eV Total energy + Delta-G solvation = -3818.065043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.92490 -38.60494 -36.62661 -35.49067 -34.08391 -33.93505 -33.34268 -31.20697 -31.00026 -29.69450 -27.92332 -25.69845 -25.63160 -24.18347 -22.68283 -21.73767 -21.64145 -20.23796 -18.92089 -17.51606 -17.07882 -16.69371 -16.53268 -16.12044 -15.50003 -15.32152 -15.13006 -14.93143 -14.80510 -14.55965 -14.21604 -13.83967 -13.52026 -13.41892 -13.33194 -12.89601 -12.60895 -12.57460 -12.42487 -12.20974 -11.87514 -11.79431 -11.65993 -11.63772 -11.55970 -11.50097 -11.33062 -11.12700 -11.06926 -10.99955 -10.94084 -10.44819 -10.42812 -9.84328 -9.53488 -9.08052 -9.02789 -8.79676 -8.54137 -8.46116 -6.15855 -4.21577 0.73469 1.24938 1.30988 3.07323 3.22676 3.30038 3.33124 3.66700 3.69526 4.18843 4.33975 4.38626 4.65241 4.68286 4.79522 4.82221 4.86400 4.91348 4.99933 5.08333 5.15969 5.19433 5.23252 5.30277 5.34985 5.40222 5.45498 5.52408 5.58357 5.59812 5.62645 5.69590 5.71590 5.81689 5.85908 5.94457 5.98182 6.34323 6.39092 6.43018 6.53150 6.78763 6.80872 6.90170 6.97589 7.25997 7.31933 7.77029 8.13606 8.81961 9.43406 10.95186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002457 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.336375 B =11392.715816 C =12010.507481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.012 3.988 4 C 0.082 3.918 5 H 0.091 0.909 6 C 0.079 3.921 7 N -1.131 6.131 8 S 2.590 3.410 9 O -0.968 6.968 10 O -0.966 6.966 11 C -0.588 4.588 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.074 4.074 22 C -0.058 4.058 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.092 4.092 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -15.198 -21.051 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.252 5.252 3 C -0.136 4.136 4 C -0.029 4.029 5 H 0.109 0.891 6 C -0.049 4.049 7 N -0.891 5.891 8 S 2.688 3.312 9 O -0.958 6.958 10 O -0.956 6.956 11 C -0.721 4.721 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.112 4.112 22 C -0.059 4.059 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.110 4.110 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.246 0.754 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.803 -15.825 -20.487 26.329 hybrid contribution 0.040 1.757 0.108 1.761 sum 4.844 -14.068 -20.379 25.232 Atomic orbital electron populations 1.22607 0.87534 1.01319 1.02016 1.62223 1.07675 1.13994 1.41291 1.22578 1.00701 0.88863 1.01462 1.22039 0.96877 0.96377 0.87568 0.89133 1.22079 0.83228 1.00887 0.98710 1.56074 1.13255 1.81759 1.38040 1.05625 0.74803 0.78084 0.72697 1.93553 1.29313 1.87915 1.85036 1.93538 1.74139 1.64842 1.63053 1.30428 1.11892 1.19166 1.10638 1.18963 0.98858 0.96629 0.86649 1.21021 1.37540 0.98363 0.98996 0.92027 1.25076 0.95251 0.98869 0.95343 1.69961 1.42894 1.37023 1.02894 0.86412 0.78987 0.83711 0.78158 1.19662 1.20784 1.20768 1.20635 0.95673 0.98992 0.95892 1.19599 0.98131 0.93399 0.94733 1.21037 1.00761 0.93546 0.98582 1.21063 1.00638 0.99569 0.92807 1.21076 1.00870 0.95456 0.97335 1.21112 1.00544 0.93973 0.98492 1.20940 0.98883 0.99338 0.91827 0.94357 0.91106 0.91557 0.91175 0.91363 0.94129 0.90750 0.89571 0.75365 0.86380 0.86240 0.94867 0.94817 0.92552 0.90434 0.89988 0.86413 0.86569 0.86702 0.86583 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.45 60.06 0.51 0.62 16 2 N -0.53 -4.56 4.27 -243.18 -1.04 -5.60 16 3 C 0.01 0.10 8.18 60.07 0.49 0.59 16 4 C 0.08 0.72 2.05 -67.71 -0.14 0.58 16 5 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 6 C 0.08 0.82 4.91 -4.04 -0.02 0.80 16 7 N -1.13 -14.10 5.54 -10.61 -0.06 -14.15 16 8 S 2.59 45.22 5.46 -107.50 -0.59 44.64 16 9 O -0.97 -19.88 18.08 -57.54 -1.04 -20.92 16 10 O -0.97 -19.65 17.50 -57.54 -1.01 -20.66 16 11 C -0.59 -10.91 6.02 37.16 0.22 -10.69 16 12 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 13 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.07 -0.58 4.88 -27.89 -0.14 -0.71 16 22 C -0.06 -0.51 4.79 -104.63 -0.50 -1.01 16 23 C -0.12 -1.05 9.72 -39.58 -0.38 -1.43 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 27 C -0.09 -0.79 9.45 -39.59 -0.37 -1.16 16 28 H 0.04 0.34 6.15 -51.93 -0.32 0.02 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.54 7.44 -51.93 -0.39 0.16 16 31 H 0.07 0.52 6.83 -51.93 -0.35 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.37 6.36 -51.93 -0.33 0.04 16 34 H 0.07 0.70 5.85 -51.93 -0.30 0.39 16 35 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 36 H 0.41 4.57 5.33 -34.47 -0.18 4.38 16 37 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 38 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.56 6.90 -51.93 -0.36 0.20 16 43 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -34.75 396.48 -11.75 -46.51 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.64 Total: 2.90 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -2.08 Total: -29.11 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.36 Total: -45.32 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.05 Total: -41.58 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.59 Total: 44.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.75 -11.75 -46.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.135 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds