Wall clock time and date at job start Tue Mar 31 2020 22:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00335 * 2 1 4 4 C 1.46899 * 111.00325 * 123.95518 * 2 1 3 5 5 H 1.09003 * 109.47340 * 36.94738 * 4 2 1 6 6 C 1.53005 * 109.47178 * 276.95303 * 4 2 1 7 7 N 1.46497 * 109.47274 * 69.57752 * 6 4 2 8 8 S 1.65599 * 119.99962 * 166.16735 * 7 6 4 9 9 O 1.42094 * 104.27630 * 181.34761 * 8 7 6 10 10 O 1.42102 * 104.27285 * 309.20200 * 8 7 6 11 11 C 1.81400 * 104.45099 * 65.27373 * 8 7 6 12 12 C 1.52997 * 109.47203 * 180.02562 * 11 8 7 13 13 C 1.50697 * 109.47249 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99924 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99857 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00176 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99708 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47304 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47281 * 119.99762 * 17 15 13 20 20 H 1.48500 * 109.46890 * 239.99888 * 17 15 13 21 21 C 1.52999 * 109.47570 * 156.94649 * 4 2 1 22 22 C 1.50695 * 109.47356 * 299.83047 * 21 4 2 23 23 C 1.38242 * 119.99609 * 275.15332 * 22 21 4 24 24 C 1.38232 * 120.00036 * 179.76471 * 23 22 21 25 25 C 1.38237 * 119.99739 * 0.50571 * 24 23 22 26 26 C 1.38237 * 120.00120 * 359.75017 * 25 24 23 27 27 C 1.38231 * 120.00416 * 95.42984 * 22 21 4 28 28 H 1.09000 * 109.46869 * 320.09985 * 1 2 3 29 29 H 1.09000 * 109.47487 * 80.09794 * 1 2 3 30 30 H 1.09001 * 109.47264 * 200.10522 * 1 2 3 31 31 H 1.08999 * 109.46878 * 176.79904 * 3 2 1 32 32 H 1.09001 * 109.46733 * 296.80045 * 3 2 1 33 33 H 1.08999 * 109.46988 * 56.79998 * 3 2 1 34 34 H 1.09003 * 109.46801 * 309.57812 * 6 4 2 35 35 H 1.08996 * 109.47051 * 189.58009 * 6 4 2 36 36 H 0.96996 * 119.99955 * 346.43955 * 7 6 4 37 37 H 1.08997 * 109.46939 * 299.99905 * 11 8 7 38 38 H 1.08999 * 109.47043 * 59.99828 * 11 8 7 39 39 H 1.09004 * 109.46947 * 300.00181 * 12 11 8 40 40 H 1.08999 * 109.47348 * 59.99909 * 12 11 8 41 41 H 0.97004 * 120.00062 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46646 * 59.82861 * 21 4 2 43 43 H 1.09002 * 109.47472 * 179.81816 * 21 4 2 44 44 H 1.07999 * 119.99829 * 359.97438 * 23 22 21 45 45 H 1.07999 * 120.00308 * 180.23349 * 24 23 22 46 46 H 1.08000 * 119.99896 * 179.71972 * 25 24 23 47 47 H 1.08006 * 120.00151 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.99857 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.3590 -1.6323 1.3181 6 6 2.0152 0.1209 2.3842 7 7 0.6411 0.3821 2.8196 8 16 0.3552 1.0186 4.3213 9 8 -1.0610 1.1013 4.4031 10 8 1.0923 0.1823 5.2025 11 6 1.0870 2.6772 4.2568 12 6 0.8862 3.3760 5.6029 13 6 1.4947 4.7536 5.5495 14 1 1.9762 5.0966 4.6457 15 6 1.4359 5.5765 6.6543 16 7 0.8483 5.1594 7.7543 17 14 2.1896 7.2844 6.5878 18 1 2.7850 7.5109 5.2463 19 1 1.1365 8.3005 6.8404 20 1 3.2471 7.3994 7.6240 21 6 3.4174 -1.2348 0.8225 22 6 3.3973 -2.1117 -0.4029 23 6 3.1180 -3.4603 -0.2831 24 6 3.0947 -4.2639 -1.4076 25 6 3.3611 -3.7209 -2.6507 26 6 3.6455 -2.3734 -2.7698 27 6 3.6637 -1.5688 -1.6459 28 1 -0.3633 0.7884 0.6592 29 1 -0.3634 0.1767 -1.0123 30 1 -0.3634 -0.9650 0.3533 31 1 3.0836 1.3428 0.0574 32 1 1.6931 1.8766 -0.9173 33 1 1.6004 1.9123 0.8599 34 1 2.5080 1.0647 2.1508 35 1 2.5590 -0.3855 3.1817 36 1 -0.1015 0.1784 2.2297 37 1 2.1532 2.5958 4.0456 38 1 0.6040 3.2571 3.4703 39 1 -0.1800 3.4573 5.8146 40 1 1.3695 2.7960 6.3891 41 1 0.8073 5.7383 8.5317 42 1 4.0532 -0.3686 0.6390 43 1 3.8092 -1.8004 1.6678 44 1 2.9146 -3.8854 0.6886 45 1 2.8729 -5.3167 -1.3146 46 1 3.3474 -4.3496 -3.5287 47 1 3.8540 -1.9492 -3.7410 48 1 3.8867 -0.5162 -1.7388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:43 Heat of formation + Delta-G solvation = -70.686107 kcal Electronic energy + Delta-G solvation = -27823.737211 eV Core-core repulsion = 24004.629549 eV Total energy + Delta-G solvation = -3819.107662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.59009 -39.27865 -38.17906 -37.04577 -35.91046 -35.06147 -33.96680 -33.14426 -31.59235 -30.41336 -28.57692 -27.59937 -26.44645 -24.89792 -23.62006 -23.28125 -22.30033 -21.03461 -20.21296 -19.09983 -18.28941 -17.80362 -17.39690 -17.21304 -16.92724 -16.54188 -16.31185 -15.96703 -15.61725 -15.50593 -15.27216 -14.93813 -14.57256 -14.46849 -14.10725 -14.01263 -13.75241 -13.63843 -13.38983 -13.24031 -13.16168 -13.09435 -12.97012 -12.94167 -12.79260 -12.67376 -12.51059 -12.27697 -12.16416 -12.11585 -12.00481 -11.74652 -11.68363 -11.56122 -11.18591 -10.66703 -10.40643 -9.63866 -9.41290 -9.15093 -8.27063 -6.40954 -0.71434 0.63569 0.69927 1.40646 1.40987 1.54212 1.81091 2.37063 2.76882 3.02551 3.05286 3.06669 3.23129 3.67913 3.89703 4.04776 4.09562 4.15271 4.18690 4.21811 4.31725 4.37538 4.42636 4.48948 4.55606 4.59710 4.69326 4.73493 4.76464 4.81151 4.89078 4.93478 5.01939 5.06516 5.06743 5.20685 5.25690 5.26628 5.35192 5.36708 5.67499 5.74513 5.79332 5.91172 5.96932 6.04993 6.13602 6.14900 6.31402 6.73068 7.29376 8.85392 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002457 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.336375 B =11392.715816 C =12010.507481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.528 5.528 3 C 0.008 3.992 4 C 0.089 3.911 5 H 0.087 0.913 6 C 0.069 3.931 7 N -1.111 6.111 8 S 2.617 3.383 9 O -1.001 7.001 10 O -0.996 6.996 11 C -0.584 4.584 12 C 0.020 3.980 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.255 1.255 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.070 4.070 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.101 4.101 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.419 0.581 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -14.817 -23.319 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.251 5.251 3 C -0.139 4.139 4 C -0.022 4.022 5 H 0.105 0.895 6 C -0.058 4.058 7 N -0.876 5.876 8 S 2.714 3.286 9 O -0.991 6.991 10 O -0.985 6.985 11 C -0.717 4.717 12 C -0.019 4.019 13 C -0.575 4.575 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.109 4.109 22 C -0.066 4.066 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.119 4.119 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.258 0.742 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.023 0.977 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.104 -15.443 -22.772 28.184 hybrid contribution -0.364 1.546 0.729 1.747 sum 5.740 -13.897 -22.043 26.683 Atomic orbital electron populations 1.22663 0.87616 1.01274 1.02342 1.62253 1.07638 1.14292 1.40918 1.22646 1.01416 0.88450 1.01432 1.21989 0.97581 0.95861 0.86722 0.89483 1.22403 0.81691 1.02266 0.99462 1.55592 1.14846 1.80757 1.36384 1.04558 0.73424 0.77328 0.73330 1.93501 1.31383 1.88188 1.86069 1.93498 1.74576 1.65425 1.65041 1.30302 1.14175 1.19805 1.07399 1.18820 0.96626 0.96771 0.89658 1.21530 1.37197 0.99235 0.99515 0.90507 1.26129 0.95739 1.03555 0.94958 1.70107 1.44599 1.38868 1.03841 0.85262 0.78023 0.78022 0.78923 1.17807 1.20515 1.20395 1.20624 0.95008 0.99328 0.95908 1.19701 0.98353 0.93552 0.95030 1.21237 1.01043 0.93840 0.99130 1.21316 1.00531 1.00374 0.92890 1.21347 1.00573 0.95791 0.97932 1.21369 1.00362 0.94184 0.99158 1.21098 0.99036 0.99798 0.91962 0.94772 0.90496 0.91376 0.90065 0.90866 0.94828 0.89096 0.89721 0.74172 0.83811 0.84053 0.97721 0.97476 0.92421 0.89537 0.89387 0.85793 0.85287 0.85169 0.85207 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.45 127.69 1.08 1.22 16 2 N -0.53 -7.98 4.27 -923.27 -3.94 -11.92 16 3 C 0.01 0.12 8.18 127.69 1.04 1.16 16 4 C 0.09 1.39 2.05 44.92 0.09 1.48 16 5 H 0.09 1.45 7.48 -2.39 -0.02 1.43 16 6 C 0.07 1.29 4.91 86.38 0.42 1.72 16 7 N -1.11 -26.08 5.54 -187.49 -1.04 -27.12 16 8 S 2.62 90.65 5.46 -56.49 -0.31 90.34 16 9 O -1.00 -41.46 18.08 -127.65 -2.31 -43.77 16 10 O -1.00 -40.65 17.50 -127.65 -2.23 -42.88 16 11 C -0.58 -21.18 6.02 71.98 0.43 -20.75 16 12 C 0.02 1.04 4.98 29.85 0.15 1.18 16 13 C -0.54 -29.18 9.11 25.60 0.23 -28.94 16 14 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 15 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 16 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 17 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 18 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.07 -0.96 4.88 29.85 0.15 -0.82 16 22 C -0.07 -1.04 4.79 -19.87 -0.10 -1.14 16 23 C -0.13 -2.15 9.72 22.27 0.22 -1.93 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 25 C -0.14 -2.03 10.05 22.27 0.22 -1.80 16 26 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 27 C -0.10 -1.56 9.45 22.27 0.21 -1.35 16 28 H 0.03 0.55 6.15 -2.39 -0.01 0.53 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.01 7.44 -2.39 -0.02 0.99 16 31 H 0.08 0.95 6.83 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.03 0.52 6.36 -2.39 -0.02 0.50 16 34 H 0.09 1.45 5.85 -2.39 -0.01 1.43 16 35 H 0.08 1.67 7.69 -2.39 -0.02 1.65 16 36 H 0.42 8.71 5.33 -96.75 -0.52 8.20 16 37 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 38 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.09 1.02 6.90 -2.38 -0.02 1.01 16 43 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 44 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.13 1.47 8.06 -2.91 -0.02 1.44 16 48 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -75.38 396.48 -2.02 -77.40 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.43 Total: 22.76 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 5.07 Total: -53.35 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.69 Total: -95.31 kcal Atomic # 8 Polarization: -82.11 SS G_CDS: -4.54 Total: -86.66 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 90.65 SS G_CDS: -0.31 Total: 90.34 kcal Total: -75.38 -2.02 -77.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.718 kcal (2) G-P(sol) polarization free energy of solvation -75.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds