Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 S 1.81392 * 109.47397 * 179.97438 * 4 3 2 6 6 C 1.81399 * 101.92255 * 179.97438 * 5 4 3 7 7 O 1.42102 * 108.58038 * 294.48633 * 5 4 3 8 8 O 1.42106 * 108.57939 * 65.51329 * 5 4 3 9 9 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 10 10 C 1.50695 * 109.46944 * 66.04457 * 9 2 1 11 11 C 1.38278 * 119.92801 * 269.72394 * 10 9 2 12 12 C 1.38111 * 120.07611 * 179.72463 * 11 10 9 13 13 C 1.38907 * 119.92042 * 0.55438 * 12 11 10 14 14 N 1.39680 * 120.07281 * 179.74647 * 13 12 11 15 15 C 1.46499 * 120.00038 * 179.97438 * 14 13 12 16 16 C 1.46492 * 119.99794 * 359.97239 * 14 13 12 17 17 C 1.50700 * 109.47087 * 90.00707 * 16 14 13 18 18 H 1.08001 * 119.99941 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00266 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00190 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47037 * 89.99857 * 21 19 17 23 23 H 1.48500 * 109.47238 * 209.99703 * 21 19 17 24 24 H 1.48495 * 109.47252 * 329.99959 * 21 19 17 25 25 C 1.38913 * 119.85605 * 359.72157 * 13 12 11 26 26 C 1.38111 * 119.92121 * 0.02562 * 25 13 12 27 27 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 28 28 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 30 30 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 31 31 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 32 32 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 33 33 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 34 34 H 1.09007 * 109.46689 * 60.00134 * 6 5 4 35 35 H 1.09001 * 109.47418 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47369 * 300.00224 * 6 5 4 37 37 H 1.09002 * 109.46783 * 186.04686 * 9 2 1 38 38 H 1.09002 * 109.46955 * 306.04307 * 9 2 1 39 39 H 1.08006 * 119.96360 * 359.97438 * 11 10 9 40 40 H 1.08002 * 120.03582 * 180.27147 * 12 11 10 41 41 H 1.09004 * 109.47411 * 89.99464 * 15 14 13 42 42 H 1.09001 * 109.46989 * 209.99904 * 15 14 13 43 43 H 1.09007 * 109.46749 * 329.99632 * 15 14 13 44 44 H 1.09005 * 109.47192 * 210.00106 * 16 14 13 45 45 H 1.08999 * 109.47701 * 330.00397 * 16 14 13 46 46 H 0.96998 * 120.00610 * 180.02562 * 20 19 17 47 47 H 1.07991 * 120.04084 * 179.97438 * 25 13 12 48 48 H 1.07993 * 119.96033 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 16 2.2808 3.7512 -1.3179 6 6 1.7431 4.3591 -2.9402 7 8 1.6084 4.4937 -0.3100 8 8 3.7006 3.6918 -1.3051 9 6 1.9955 -0.7660 1.1376 10 6 1.6370 -2.2204 0.9729 11 6 0.4531 -2.7030 1.4997 12 6 0.1187 -4.0342 1.3456 13 6 0.9788 -4.8909 0.6703 14 7 0.6463 -6.2389 0.5172 15 6 1.5542 -7.1409 -0.1957 16 6 -0.6104 -6.7506 1.0695 17 6 -1.7010 -6.6247 0.0372 18 1 -1.4802 -6.2050 -0.9332 19 6 -2.9809 -7.0443 0.3317 20 7 -3.2499 -7.5548 1.5135 21 14 -4.3329 -6.8875 -0.9477 22 1 -4.3831 -8.1239 -1.7688 23 1 -5.6382 -6.6919 -0.2672 24 1 -4.0522 -5.7223 -1.8244 25 6 2.1700 -4.4040 0.1473 26 6 2.4957 -3.0706 0.3005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3444 0.1083 32 1 2.0658 1.5016 -2.1491 33 1 0.5471 2.0845 -1.4264 34 1 0.6555 4.3180 -3.0013 35 1 2.0761 5.3887 -3.0711 36 1 2.1748 3.7357 -3.7231 37 1 3.0798 -0.6611 1.1756 38 1 1.5612 -0.3872 2.0628 39 1 -0.2129 -2.0374 2.0289 40 1 -0.8082 -4.4095 1.7535 41 1 2.2567 -7.5826 0.5112 42 1 0.9777 -7.9309 -0.6769 43 1 2.1038 -6.5801 -0.9518 44 1 -0.4873 -7.7988 1.3420 45 1 -0.8797 -6.1743 1.9547 46 1 -4.1503 -7.8504 1.7207 47 1 2.8410 -5.0675 -0.3778 48 1 3.4218 -2.6916 -0.1055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155184116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -25.597652 kcal Electronic energy + Delta-G solvation = -26965.315039 eV Core-core repulsion = 23148.162559 eV Total energy + Delta-G solvation = -3817.152480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.27483 -37.77370 -37.33605 -36.38501 -35.55079 -32.82607 -31.96622 -30.50759 -30.10076 -29.51698 -27.82042 -27.23801 -25.45839 -24.10371 -22.43981 -21.52929 -21.21140 -19.59680 -19.22184 -17.25874 -16.71513 -16.63176 -16.50896 -16.33522 -15.65895 -15.41582 -15.07687 -14.88592 -14.38380 -14.09040 -13.88647 -13.72673 -13.68238 -13.62736 -13.18437 -12.94819 -12.87673 -12.61194 -12.44492 -12.34774 -12.20123 -11.93489 -11.71817 -11.67086 -11.50766 -11.44120 -11.32281 -11.26714 -11.09706 -10.92912 -10.71660 -10.62010 -10.29063 -9.91408 -9.77710 -8.87809 -8.53802 -8.43579 -8.26929 -6.49080 -6.04467 -4.20418 -0.43260 2.08209 2.18459 2.33911 3.19224 3.23257 3.30286 3.34458 3.61105 3.91898 4.13246 4.23315 4.32481 4.34161 4.38342 4.56311 4.62839 5.02892 5.03847 5.18505 5.18591 5.23776 5.24472 5.38546 5.48092 5.50237 5.60215 5.63195 5.73834 5.81118 5.99135 6.04673 6.06288 6.26270 6.35991 6.40845 6.62364 6.85085 6.89657 6.96057 7.05388 7.17923 7.24466 7.33599 7.57680 7.78059 8.12628 8.24169 8.46365 8.88701 9.46433 10.92682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.002181 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.307706 B =12832.471437 C =13840.295407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.064 3.936 4 C -0.608 4.608 5 S 2.422 3.578 6 C -0.655 4.655 7 O -0.942 6.942 8 O -0.939 6.939 9 C 0.107 3.893 10 C -0.169 4.169 11 C -0.066 4.066 12 C -0.188 4.188 13 C 0.242 3.758 14 N -0.615 5.615 15 C 0.098 3.902 16 C 0.249 3.751 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.222 4.222 26 C -0.051 4.051 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.113 0.887 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 19.091 -6.166 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.252 5.252 3 C -0.065 4.065 4 C -0.737 4.737 5 S 2.603 3.397 6 C -0.805 4.805 7 O -0.939 6.939 8 O -0.937 6.937 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.086 4.086 12 C -0.210 4.210 13 C 0.135 3.865 14 N -0.321 5.321 15 C -0.046 4.046 16 C 0.129 3.871 17 C -0.569 4.569 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.246 4.246 26 C -0.070 4.070 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.126 0.874 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.072 18.985 -5.851 22.743 hybrid contribution -1.775 -0.099 -0.817 1.956 sum 9.297 18.885 -6.668 22.081 Atomic orbital electron populations 1.22561 0.87088 1.03707 1.00041 1.62076 1.08439 1.10637 1.44083 1.21734 1.01409 0.90611 0.92742 1.30433 1.13424 1.21942 1.07921 1.07785 0.76040 0.78170 0.77685 1.30258 1.13037 1.13312 1.23873 1.93606 1.76522 1.69231 1.54504 1.93608 1.27244 1.86339 1.86465 1.20893 0.99553 0.90970 0.90494 1.19068 0.97442 0.93813 1.06905 1.20663 0.95239 0.94751 0.97946 1.20847 1.01525 0.93160 1.05483 1.17966 0.92152 0.84750 0.91658 1.47106 1.22172 1.04830 1.57971 1.21477 0.93432 0.94056 0.95632 1.19285 0.78922 0.94659 0.94247 1.21570 0.93645 1.41363 1.00372 0.92278 1.24967 0.98590 0.95013 0.95538 1.69928 1.21158 1.41681 1.20622 0.86523 0.81122 0.78544 0.81439 1.20626 1.21095 1.19807 1.20567 0.98513 0.96289 1.09184 1.20484 0.98001 0.92403 0.96160 0.91777 0.89645 0.95531 0.93261 0.89204 0.83947 0.84913 0.85317 0.85295 0.85198 0.90509 0.94407 0.87445 0.85114 0.94597 0.91467 0.92652 0.95212 0.94635 0.92634 0.86890 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.98 60.07 0.54 0.70 16 2 N -0.53 -6.03 4.75 -244.36 -1.16 -7.20 16 3 C 0.06 0.59 4.96 -3.83 -0.02 0.57 16 4 C -0.61 -3.71 5.73 37.16 0.21 -3.50 16 5 S 2.42 15.44 5.36 -107.50 -0.58 14.87 16 6 C -0.66 -1.98 10.62 101.05 1.07 -0.90 16 7 O -0.94 -9.68 18.10 -57.83 -1.05 -10.73 16 8 O -0.94 -9.56 18.10 -57.83 -1.05 -10.61 16 9 C 0.11 1.31 5.12 -4.98 -0.03 1.28 16 10 C -0.17 -2.53 4.88 -104.59 -0.51 -3.04 16 11 C -0.07 -1.10 7.90 -39.61 -0.31 -1.41 16 12 C -0.19 -3.70 9.21 -39.38 -0.36 -4.06 16 13 C 0.24 4.81 6.55 -83.78 -0.55 4.26 16 14 N -0.62 -12.99 2.99 -181.00 -0.54 -13.53 16 15 C 0.10 1.70 10.19 59.85 0.61 2.31 16 16 C 0.25 6.16 4.91 -5.20 -0.03 6.13 16 17 C -0.53 -14.28 9.39 -34.44 -0.32 -14.60 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 21 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.22 -3.80 9.21 -39.38 -0.36 -4.16 16 26 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 27 H 0.06 0.60 6.47 -51.93 -0.34 0.27 16 28 H 0.08 1.15 5.91 -51.93 -0.31 0.84 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.44 8.12 -51.92 -0.42 0.02 16 31 H 0.09 0.77 7.93 -51.93 -0.41 0.35 16 32 H 0.14 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.13 0.61 6.55 -51.92 -0.34 0.27 16 34 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16 35 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 36 H 0.13 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 38 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.11 1.58 8.00 -52.48 -0.42 1.16 16 40 H 0.13 2.86 6.14 -52.49 -0.32 2.53 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.05 0.85 6.20 -51.92 -0.32 0.53 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -35.00 399.02 -10.88 -45.87 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.69 Total: -0.02 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.54 Total: -16.02 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.97 Total: -45.37 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -2.09 Total: -21.34 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 15.44 SS G_CDS: -0.58 Total: 14.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.00 -10.88 -45.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155184116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.275 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds