Wall clock time and date at job start Tue Mar 31 2020 22:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 S 1.81392 * 109.47397 * 179.97438 * 4 3 2 6 6 C 1.81399 * 101.92255 * 179.97438 * 5 4 3 7 7 O 1.42102 * 108.58038 * 294.48633 * 5 4 3 8 8 O 1.42106 * 108.57939 * 65.51329 * 5 4 3 9 9 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 10 10 C 1.50695 * 109.46944 * 66.04457 * 9 2 1 11 11 C 1.38278 * 119.92801 * 269.72394 * 10 9 2 12 12 C 1.38111 * 120.07611 * 179.72463 * 11 10 9 13 13 C 1.38907 * 119.92042 * 0.55438 * 12 11 10 14 14 N 1.39680 * 120.07281 * 179.74647 * 13 12 11 15 15 C 1.46499 * 120.00038 * 179.97438 * 14 13 12 16 16 C 1.46492 * 119.99794 * 359.97239 * 14 13 12 17 17 C 1.50700 * 109.47087 * 90.00707 * 16 14 13 18 18 H 1.08001 * 119.99941 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00266 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00190 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47037 * 89.99857 * 21 19 17 23 23 H 1.48500 * 109.47238 * 209.99703 * 21 19 17 24 24 H 1.48495 * 109.47252 * 329.99959 * 21 19 17 25 25 C 1.38913 * 119.85605 * 359.72157 * 13 12 11 26 26 C 1.38111 * 119.92121 * 0.02562 * 25 13 12 27 27 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 28 28 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 30 30 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 31 31 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 32 32 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 33 33 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 34 34 H 1.09007 * 109.46689 * 60.00134 * 6 5 4 35 35 H 1.09001 * 109.47418 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47369 * 300.00224 * 6 5 4 37 37 H 1.09002 * 109.46783 * 186.04686 * 9 2 1 38 38 H 1.09002 * 109.46955 * 306.04307 * 9 2 1 39 39 H 1.08006 * 119.96360 * 359.97438 * 11 10 9 40 40 H 1.08002 * 120.03582 * 180.27147 * 12 11 10 41 41 H 1.09004 * 109.47411 * 89.99464 * 15 14 13 42 42 H 1.09001 * 109.46989 * 209.99904 * 15 14 13 43 43 H 1.09007 * 109.46749 * 329.99632 * 15 14 13 44 44 H 1.09005 * 109.47192 * 210.00106 * 16 14 13 45 45 H 1.08999 * 109.47701 * 330.00397 * 16 14 13 46 46 H 0.96998 * 120.00610 * 180.02562 * 20 19 17 47 47 H 1.07991 * 120.04084 * 179.97438 * 25 13 12 48 48 H 1.07993 * 119.96033 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 16 2.2808 3.7512 -1.3179 6 6 1.7431 4.3591 -2.9402 7 8 1.6084 4.4937 -0.3100 8 8 3.7006 3.6918 -1.3051 9 6 1.9955 -0.7660 1.1376 10 6 1.6370 -2.2204 0.9729 11 6 0.4531 -2.7030 1.4997 12 6 0.1187 -4.0342 1.3456 13 6 0.9788 -4.8909 0.6703 14 7 0.6463 -6.2389 0.5172 15 6 1.5542 -7.1409 -0.1957 16 6 -0.6104 -6.7506 1.0695 17 6 -1.7010 -6.6247 0.0372 18 1 -1.4802 -6.2050 -0.9332 19 6 -2.9809 -7.0443 0.3317 20 7 -3.2499 -7.5548 1.5135 21 14 -4.3329 -6.8875 -0.9477 22 1 -4.3831 -8.1239 -1.7688 23 1 -5.6382 -6.6919 -0.2672 24 1 -4.0522 -5.7223 -1.8244 25 6 2.1700 -4.4040 0.1473 26 6 2.4957 -3.0706 0.3005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3444 0.1083 32 1 2.0658 1.5016 -2.1491 33 1 0.5471 2.0845 -1.4264 34 1 0.6555 4.3180 -3.0013 35 1 2.0761 5.3887 -3.0711 36 1 2.1748 3.7357 -3.7231 37 1 3.0798 -0.6611 1.1756 38 1 1.5612 -0.3872 2.0628 39 1 -0.2129 -2.0374 2.0289 40 1 -0.8082 -4.4095 1.7535 41 1 2.2567 -7.5826 0.5112 42 1 0.9777 -7.9309 -0.6769 43 1 2.1038 -6.5801 -0.9518 44 1 -0.4873 -7.7988 1.3420 45 1 -0.8797 -6.1743 1.9547 46 1 -4.1503 -7.8504 1.7207 47 1 2.8410 -5.0675 -0.3778 48 1 3.4218 -2.6916 -0.1055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155184116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:31 Heat of formation + Delta-G solvation = -50.572122 kcal Electronic energy + Delta-G solvation = -26966.398013 eV Core-core repulsion = 23148.162559 eV Total energy + Delta-G solvation = -3818.235454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.57617 -38.81901 -37.95835 -37.05603 -36.92088 -34.78146 -32.89161 -31.90508 -30.81213 -30.24946 -29.57061 -28.28788 -26.73944 -25.55876 -23.79926 -22.96410 -22.13450 -20.98032 -19.75329 -18.63411 -18.10099 -17.82207 -17.21056 -16.99415 -16.90494 -16.42512 -16.20099 -16.17046 -15.69074 -15.34750 -15.22801 -14.77716 -14.37223 -14.34567 -14.23382 -14.00560 -13.95135 -13.87890 -13.32232 -13.19500 -13.15402 -13.09877 -13.01160 -12.99170 -12.70798 -12.70169 -12.56262 -12.49284 -12.22804 -12.14253 -11.97087 -11.92342 -11.73977 -11.41619 -11.34476 -10.64385 -10.40157 -9.64478 -9.30966 -8.35952 -7.79374 -6.37459 -0.89442 0.71722 0.84538 1.36837 1.37688 1.48923 1.92230 2.34192 2.63702 2.67177 2.98976 3.06202 3.17051 3.38009 3.66924 3.89450 4.02889 4.08199 4.15166 4.25683 4.28763 4.36171 4.42359 4.46409 4.51960 4.58517 4.65172 4.70606 4.72376 4.79490 4.87143 4.91909 4.93403 5.02176 5.02663 5.13269 5.16037 5.20733 5.34027 5.59381 5.67653 5.70544 5.88753 6.05378 6.07278 6.10521 6.23048 6.50611 6.82994 6.94551 7.34433 8.83297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.002181 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.307706 B =12832.471437 C =13840.295407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.533 5.533 3 C 0.053 3.947 4 C -0.602 4.602 5 S 2.429 3.571 6 C -0.636 4.636 7 O -0.989 6.989 8 O -0.985 6.985 9 C 0.106 3.894 10 C -0.155 4.155 11 C -0.065 4.065 12 C -0.216 4.216 13 C 0.212 3.788 14 N -0.632 5.632 15 C 0.098 3.902 16 C 0.266 3.734 17 C -0.539 4.539 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.962 3.038 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.271 1.271 25 C -0.217 4.217 26 C -0.048 4.048 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.095 0.905 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.008 0.992 45 H 0.010 0.990 46 H 0.267 0.733 47 H 0.132 0.868 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.555 21.141 -8.765 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.257 5.257 3 C -0.076 4.076 4 C -0.732 4.732 5 S 2.616 3.384 6 C -0.789 4.789 7 O -0.986 6.986 8 O -0.982 6.982 9 C -0.021 4.021 10 C -0.157 4.157 11 C -0.084 4.084 12 C -0.238 4.238 13 C 0.107 3.893 14 N -0.340 5.340 15 C -0.045 4.045 16 C 0.145 3.855 17 C -0.578 4.578 18 H 0.067 0.933 19 C -0.188 4.188 20 N -0.567 5.567 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.195 1.195 25 C -0.240 4.240 26 C -0.067 4.067 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.179 0.821 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.026 0.974 45 H 0.028 0.972 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.023 21.055 -8.422 25.667 hybrid contribution -2.001 -0.601 -0.030 2.090 sum 10.021 20.454 -8.452 24.295 Atomic orbital electron populations 1.22575 0.87311 1.02416 1.01377 1.62048 1.08328 1.11968 1.43400 1.21880 1.01721 0.89473 0.94512 1.30368 1.14722 1.21147 1.06941 1.07247 0.74661 0.77838 0.78630 1.30077 1.14639 1.13909 1.20290 1.93546 1.76895 1.70372 1.57779 1.93549 1.30029 1.86902 1.87692 1.20928 1.00828 0.89088 0.91240 1.19407 0.96074 0.95550 1.04703 1.20788 0.96240 0.93500 0.97890 1.20735 1.00889 0.94885 1.07330 1.18236 0.93612 0.84215 0.93188 1.46963 1.21655 1.06017 1.59361 1.21601 0.93013 0.93619 0.96256 1.18768 0.80658 0.92918 0.93196 1.21756 0.94688 1.41098 1.00238 0.93277 1.25797 1.00902 0.94598 0.97496 1.70039 1.21802 1.42507 1.22359 0.85491 0.78161 0.78730 0.78922 1.19647 1.20473 1.19518 1.20803 0.97373 0.97413 1.08390 1.20875 0.98989 0.91567 0.95271 0.89661 0.92177 0.95135 0.93430 0.88759 0.82080 0.83110 0.83057 0.84470 0.82861 0.88629 0.93996 0.86322 0.88774 0.92978 0.92553 0.90294 0.97372 0.97170 0.92414 0.84979 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.98 127.69 1.15 1.38 16 2 N -0.53 -10.78 4.75 -927.02 -4.41 -15.19 16 3 C 0.05 0.84 4.96 86.30 0.43 1.27 16 4 C -0.60 -5.52 5.73 71.98 0.41 -5.11 16 5 S 2.43 26.51 5.36 -56.49 -0.30 26.20 16 6 C -0.64 -1.38 10.62 113.37 1.20 -0.18 16 7 O -0.99 -19.59 18.10 -127.37 -2.31 -21.89 16 8 O -0.98 -19.03 18.10 -127.37 -2.30 -21.34 16 9 C 0.11 2.32 5.12 85.55 0.44 2.75 16 10 C -0.15 -4.35 4.88 -19.84 -0.10 -4.44 16 11 C -0.06 -2.16 7.90 22.25 0.18 -1.98 16 12 C -0.22 -8.92 9.21 22.40 0.21 -8.72 16 13 C 0.21 8.60 6.55 38.21 0.25 8.85 16 14 N -0.63 -27.61 2.99 -726.56 -2.17 -29.78 16 15 C 0.10 3.39 10.19 127.77 1.30 4.69 16 16 C 0.27 14.00 4.91 85.63 0.42 14.42 16 17 C -0.54 -30.17 9.39 25.60 0.24 -29.93 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 19 C 0.01 0.63 5.46 84.65 0.46 1.09 16 20 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 21 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.22 -7.07 9.21 22.40 0.21 -6.86 16 26 C -0.05 -1.34 9.69 22.25 0.22 -1.12 16 27 H 0.08 1.37 6.47 -2.39 -0.02 1.35 16 28 H 0.06 1.56 5.91 -2.38 -0.01 1.55 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.77 8.12 -2.38 -0.02 0.75 16 31 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 32 H 0.16 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.15 0.83 6.55 -2.39 -0.02 0.82 16 34 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.15 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.10 1.76 7.87 -2.39 -0.02 1.74 16 38 H 0.04 0.89 8.06 -2.39 -0.02 0.87 16 39 H 0.12 3.55 8.00 -2.91 -0.02 3.53 16 40 H 0.09 4.52 6.14 -2.91 -0.02 4.50 16 41 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 43 H 0.08 2.31 6.20 -2.38 -0.01 2.29 16 44 H 0.01 0.46 8.07 -2.38 -0.02 0.44 16 45 H 0.01 0.59 6.20 -2.39 -0.01 0.57 16 46 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.13 3.73 6.14 -2.91 -0.02 3.71 16 48 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -79.17 399.02 -1.23 -80.40 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.94 Total: 13.79 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 7.01 Total: -23.89 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -6.29 Total: -99.03 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -4.61 Total: -43.23 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 26.51 SS G_CDS: -0.30 Total: 26.20 kcal Total: -79.17 -1.23 -80.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155184116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.827 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds