Wall clock time and date at job start Tue Mar 31 2020 22:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99720 * 2 1 4 4 C 1.50695 * 109.47155 * 270.00010 * 3 2 1 5 5 H 1.07999 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00359 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99598 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00282 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47131 * 119.99889 * 8 6 4 11 11 H 1.48500 * 109.46997 * 240.00080 * 8 6 4 12 12 C 1.39674 * 120.00521 * 179.97438 * 2 1 3 13 13 C 1.38905 * 120.07061 * 0.02562 * 12 2 1 14 14 C 1.38108 * 119.92517 * 179.97438 * 13 12 2 15 15 C 1.38290 * 120.06955 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.91952 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.46656 * 90.00495 * 16 15 14 18 18 C 1.46906 * 110.99573 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.47020 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47077 * 179.97438 * 19 18 17 21 21 S 1.81405 * 109.46954 * 179.97438 * 20 19 18 22 22 C 1.81407 * 101.92098 * 180.02562 * 21 20 19 23 23 O 1.42092 * 108.58096 * 294.48783 * 21 20 19 24 24 O 1.42106 * 108.57779 * 65.51774 * 21 20 19 25 25 C 1.38280 * 120.15093 * 0.27860 * 15 14 13 26 26 C 1.38103 * 120.07444 * 359.45001 * 25 15 14 27 27 H 1.08996 * 109.47702 * 269.99752 * 1 2 3 28 28 H 1.08997 * 109.47558 * 30.00393 * 1 2 3 29 29 H 1.09006 * 109.46777 * 150.00374 * 1 2 3 30 30 H 1.09004 * 109.46781 * 29.99635 * 3 2 1 31 31 H 1.08997 * 109.47198 * 149.99390 * 3 2 1 32 32 H 0.97003 * 119.99619 * 180.02562 * 7 6 4 33 33 H 1.08006 * 120.04526 * 359.94946 * 13 12 2 34 34 H 1.08001 * 119.96705 * 179.97438 * 14 13 12 35 35 H 1.08990 * 109.47142 * 330.00480 * 16 15 14 36 36 H 1.09004 * 109.46726 * 210.00378 * 16 15 14 37 37 H 1.00896 * 111.00219 * 303.95295 * 17 16 15 38 38 H 1.09002 * 109.46991 * 299.99841 * 18 17 16 39 39 H 1.09000 * 109.47202 * 60.00133 * 18 17 16 40 40 H 1.08995 * 109.47213 * 300.00679 * 19 18 17 41 41 H 1.09008 * 109.47264 * 60.00068 * 19 18 17 42 42 H 1.08993 * 109.47277 * 299.99937 * 20 19 18 43 43 H 1.09000 * 109.47041 * 60.00238 * 20 19 18 44 44 H 1.08998 * 109.46692 * 59.99973 * 22 21 20 45 45 H 1.08994 * 109.47366 * 180.02562 * 22 21 20 46 46 H 1.09005 * 109.46954 * 300.00129 * 22 21 20 47 47 H 1.07998 * 119.95898 * 179.69933 * 25 15 14 48 48 H 1.08003 * 120.03747 * 180.27137 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1267 2.8776 -1.6728 7 7 3.5540 3.6177 -0.6731 8 14 3.4387 3.4164 -3.4339 9 1 2.8616 2.4158 -4.3673 10 1 2.8015 4.7373 -3.6677 11 1 4.9013 3.5242 -3.6669 12 6 2.1634 -1.2095 0.0005 13 6 1.4705 -2.4134 0.0005 14 6 2.1642 -3.6077 0.0005 15 6 3.5471 -3.6057 0.0000 16 6 4.3006 -4.9109 -0.0006 17 7 4.5450 -5.3345 -1.3858 18 6 5.2798 -6.6059 -1.4256 19 6 5.5144 -7.0140 -2.8813 20 6 6.2802 -8.3379 -2.9228 21 16 6.5577 -8.8221 -4.6488 22 6 7.4607 -10.3840 -4.4593 23 8 5.2998 -9.0970 -5.2498 24 8 7.4219 -7.8694 -5.2530 25 6 4.2399 -2.4090 0.0053 26 6 3.5525 -1.2113 -0.0004 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6082 2.0284 0.5138 31 1 3.1498 1.1386 0.5139 32 1 4.0308 4.4436 -0.8504 33 1 0.3904 -2.4157 0.0009 34 1 1.6261 -4.5441 0.0010 35 1 3.7118 -5.6706 0.5132 36 1 5.2532 -4.7806 0.5130 37 1 3.6804 -5.3998 -1.9018 38 1 6.2392 -6.4870 -0.9220 39 1 4.6981 -7.3777 -0.9215 40 1 4.5549 -7.1329 -3.3845 41 1 6.0960 -6.2423 -3.3859 42 1 7.2398 -8.2184 -2.4198 43 1 5.6991 -9.1097 -2.4182 44 1 6.8446 -11.0953 -3.9093 45 1 7.6946 -10.7902 -5.4433 46 1 8.3858 -10.2047 -3.9114 47 1 5.3199 -2.4111 0.0098 48 1 4.0943 -0.2769 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237195064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:54 Heat of formation + Delta-G solvation = -67.377335 kcal Electronic energy + Delta-G solvation = -26132.644694 eV Core-core repulsion = 22313.680512 eV Total energy + Delta-G solvation = -3818.964183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.45154 -38.15873 -37.95436 -37.04471 -36.84406 -34.86361 -34.06277 -31.87814 -31.12691 -30.31890 -29.61513 -27.77855 -26.40045 -25.07707 -23.42764 -23.00897 -22.53499 -20.98874 -19.73475 -18.64562 -18.15026 -17.63748 -17.28442 -16.94506 -16.92090 -16.72049 -16.08544 -15.99080 -15.55710 -15.36796 -15.30037 -14.91152 -14.48746 -14.28609 -14.07463 -14.01220 -13.87605 -13.75433 -13.43578 -13.18617 -13.12594 -13.08330 -13.00461 -12.95615 -12.90094 -12.68671 -12.66258 -12.54956 -12.26109 -11.95447 -11.87425 -11.82325 -11.72594 -11.40080 -11.21047 -10.65222 -10.41104 -9.65950 -9.25799 -8.36972 -7.80060 -6.38018 -0.87321 0.72054 0.84589 1.34918 1.37208 1.49262 1.95533 2.33760 2.63695 2.76071 3.04493 3.05621 3.17290 3.47241 3.87645 3.97543 4.04618 4.11136 4.14454 4.18432 4.25084 4.27624 4.42978 4.47569 4.52295 4.66600 4.69103 4.72833 4.77079 4.79543 4.88200 4.91987 5.01657 5.02591 5.07529 5.13397 5.15685 5.21125 5.33677 5.59740 5.66696 5.70294 5.93881 6.06717 6.15420 6.25194 6.50181 6.51832 6.82696 6.94308 7.33806 8.82419 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.001941 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.865851 B =14425.740047 C =15862.015198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.266 3.734 4 C -0.540 4.540 5 H 0.048 0.952 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.211 3.789 13 C -0.218 4.218 14 C -0.061 4.061 15 C -0.161 4.161 16 C 0.122 3.878 17 N -0.707 5.707 18 C 0.068 3.932 19 C -0.123 4.123 20 C -0.591 4.591 21 S 2.413 3.587 22 C -0.635 4.635 23 O -0.993 6.993 24 O -0.996 6.996 25 C -0.057 4.057 26 C -0.219 4.219 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.267 0.733 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.343 0.657 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.131 0.869 46 H 0.154 0.846 47 H 0.120 0.880 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -31.866 0.550 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.144 3.856 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.106 3.894 13 C -0.240 4.240 14 C -0.080 4.080 15 C -0.164 4.164 16 C -0.006 4.006 17 N -0.339 5.339 18 C -0.061 4.061 19 C -0.162 4.162 20 C -0.722 4.722 21 S 2.602 3.398 22 C -0.788 4.788 23 O -0.990 6.990 24 O -0.993 6.993 25 C -0.076 4.076 26 C -0.241 4.241 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.174 0.826 45 H 0.150 0.850 46 H 0.172 0.828 47 H 0.138 0.862 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.184 -30.676 -0.279 31.112 hybrid contribution -0.179 0.380 -0.030 0.422 sum 5.005 -30.296 -0.309 30.708 Atomic orbital electron populations 1.21600 0.79401 1.02514 1.00973 1.46959 1.05623 1.03709 1.77689 1.18776 0.91107 0.80326 0.95384 1.21798 1.36291 1.06425 0.93350 0.93412 1.25779 0.95124 0.96378 1.01477 1.70042 1.39031 1.14810 1.32674 0.85460 0.78048 0.78189 0.79696 1.19663 1.19800 1.20309 1.18245 0.91619 0.86596 0.92900 1.20798 1.00061 0.90728 1.12460 1.20945 0.93407 0.97278 0.96404 1.19567 0.93597 0.94529 1.08693 1.20606 0.98881 0.92008 0.89081 1.60454 1.27567 1.31880 1.14034 1.21943 0.99448 0.89601 0.95142 1.21338 1.00813 0.94845 0.99190 1.30135 1.12152 1.06974 1.22970 1.07635 0.74958 0.78400 0.78828 1.30070 1.15941 1.19492 1.13294 1.93539 1.43767 1.85997 1.75732 1.93552 1.68364 1.61701 1.75696 1.20808 0.99358 0.91267 0.96212 1.20793 0.93276 0.98570 1.11498 0.92854 0.92587 0.90339 0.97205 0.97102 0.92387 0.84916 0.83791 0.92962 0.90455 0.83847 0.89977 0.93036 0.90874 0.91201 0.81970 0.81657 0.82576 0.85004 0.82772 0.86166 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.45 10.19 127.77 1.30 4.75 16 2 N -0.63 -28.19 2.99 -726.58 -2.17 -30.36 16 3 C 0.27 14.26 4.91 85.63 0.42 14.68 16 4 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.67 5.46 84.65 0.46 1.13 16 7 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 8 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 C 0.21 8.76 6.55 38.21 0.25 9.02 16 13 C -0.22 -7.16 9.21 22.40 0.21 -6.95 16 14 C -0.06 -1.68 9.69 22.25 0.22 -1.46 16 15 C -0.16 -4.55 5.39 -19.84 -0.11 -4.66 16 16 C 0.12 2.51 5.81 85.56 0.50 3.00 16 17 N -0.71 -14.25 6.49 -517.91 -3.36 -17.62 16 18 C 0.07 0.92 5.69 86.30 0.49 1.41 16 19 C -0.12 -1.68 5.48 30.59 0.17 -1.52 16 20 C -0.59 -2.96 5.81 71.98 0.42 -2.54 16 21 S 2.41 25.92 5.36 -56.49 -0.30 25.62 16 22 C -0.64 -0.42 10.62 113.37 1.20 0.79 16 23 O -0.99 -20.05 18.10 -127.37 -2.30 -22.36 16 24 O -1.00 -21.39 18.10 -127.37 -2.31 -23.70 16 25 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 26 C -0.22 -9.39 9.21 22.40 0.21 -9.18 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 29 H 0.08 2.34 6.20 -2.38 -0.01 2.33 16 30 H 0.01 0.56 8.07 -2.38 -0.02 0.54 16 31 H 0.01 0.64 6.20 -2.39 -0.01 0.62 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 34 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.05 0.85 8.08 -2.39 -0.02 0.84 16 36 H 0.08 1.53 8.08 -2.38 -0.02 1.51 16 37 H 0.34 6.85 8.72 -89.70 -0.78 6.07 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.17 -0.27 8.14 -2.39 -0.02 -0.28 16 44 H 0.16 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 48 H 0.09 4.63 6.14 -2.91 -0.02 4.62 16 Total: -1.00 -84.31 407.64 -1.79 -86.09 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.16 Total: 14.03 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 6.19 Total: -24.14 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.25 Total: -102.90 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -4.61 Total: -46.06 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 25.92 SS G_CDS: -0.30 Total: 25.62 kcal Total: -84.31 -1.79 -86.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237195064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -84.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds