Wall clock time and date at job start Tue Mar 31 2020 23:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36236 * 116.99823 * 2 1 4 4 C 1.38663 * 122.58676 * 0.19924 * 3 2 1 5 5 C 1.33434 * 114.88594 * 180.31207 * 4 3 2 6 6 S 1.75875 * 109.65522 * 359.73290 * 5 4 3 7 7 C 1.33624 * 122.58529 * 179.97438 * 3 2 1 8 8 C 1.50703 * 125.19617 * 359.97438 * 7 3 2 9 9 N 1.46906 * 109.47287 * 89.71600 * 8 7 3 10 10 C 1.46895 * 110.99971 * 66.04234 * 9 8 7 11 11 C 1.50695 * 109.47432 * 199.27653 * 10 9 8 12 12 H 1.08005 * 119.99901 * 356.03777 * 11 10 9 13 13 C 1.37872 * 120.00361 * 176.03454 * 11 10 9 14 14 N 1.31516 * 120.00008 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47329 * 89.99734 * 15 13 11 17 17 H 1.48499 * 109.47266 * 209.99763 * 15 13 11 18 18 H 1.48501 * 109.47341 * 330.00208 * 15 13 11 19 19 C 1.46901 * 110.99916 * 190.00408 * 9 8 7 20 20 C 1.52991 * 109.47267 * 75.93431 * 19 9 8 21 21 N 1.46905 * 109.47257 * 183.50873 * 20 19 9 22 22 C 1.47012 * 110.99803 * 293.63712 * 21 20 19 23 23 C 1.53103 * 109.25891 * 177.60582 * 22 21 20 24 24 O 1.43011 * 109.25666 * 56.84573 * 23 22 21 25 25 C 1.43009 * 113.74000 * 301.32968 * 24 23 22 26 26 C 1.47011 * 111.00333 * 169.99946 * 21 20 19 27 27 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47238 * 300.00461 * 1 2 3 29 29 H 1.09004 * 109.47055 * 60.00008 * 1 2 3 30 30 H 1.08002 * 122.56081 * 0.04613 * 4 3 2 31 31 H 1.08000 * 125.17789 * 179.77186 * 5 4 3 32 32 H 1.08997 * 109.47000 * 329.71445 * 8 7 3 33 33 H 1.08992 * 109.47001 * 209.71414 * 8 7 3 34 34 H 1.08996 * 109.47399 * 319.28014 * 10 9 8 35 35 H 1.09008 * 109.46555 * 79.27919 * 10 9 8 36 36 H 0.97001 * 119.99796 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.46916 * 195.93876 * 19 9 8 38 38 H 1.08996 * 109.46972 * 315.93311 * 19 9 8 39 39 H 1.09001 * 109.47469 * 303.51010 * 20 19 9 40 40 H 1.08999 * 109.47196 * 63.50895 * 20 19 9 41 41 H 1.08997 * 109.50952 * 297.54257 * 22 21 20 42 42 H 1.09001 * 109.50842 * 57.67010 * 22 21 20 43 43 H 1.08999 * 109.50197 * 296.91341 * 23 22 21 44 44 H 1.08999 * 109.54323 * 176.80899 * 23 22 21 45 45 H 1.08997 * 109.51079 * 298.73506 * 25 24 23 46 46 H 1.09005 * 109.54390 * 178.62550 * 25 24 23 47 47 H 1.08995 * 109.50719 * 302.32853 * 26 21 20 48 48 H 1.09002 * 109.50656 * 62.41723 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.3455 2.4097 0.0041 5 6 2.1050 3.5067 -0.0032 6 16 3.8035 3.0503 -0.0081 7 6 3.3774 1.3440 0.0005 8 6 4.3617 0.2029 0.0017 9 7 4.6771 -0.1733 -1.3830 10 6 5.3954 0.9073 -2.0715 11 6 5.2890 0.7113 -3.5618 12 1 4.7976 -0.1653 -3.9575 13 6 5.8189 1.6511 -4.4203 14 7 5.7255 1.4803 -5.7210 15 14 6.6692 3.1669 -3.7361 16 1 8.1152 2.8828 -3.5522 17 1 6.5037 4.2978 -4.6842 18 1 6.0650 3.5254 -2.4278 19 6 5.4429 -1.4261 -1.4267 20 6 4.5051 -2.6065 -1.1662 21 7 5.2840 -3.8514 -1.1266 22 6 5.8597 -4.1548 -2.4448 23 6 6.7101 -5.4240 -2.3445 24 8 5.9029 -6.4945 -1.8468 25 6 5.3269 -6.2329 -0.5642 26 6 4.4625 -4.9720 -0.6465 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2662 2.4501 0.0082 31 1 1.7335 4.5208 -0.0050 32 1 3.9269 -0.6515 0.5203 33 1 5.2746 0.5111 0.5112 34 1 4.9562 1.8669 -1.7989 35 1 6.4448 0.8912 -1.7769 36 1 6.0986 2.1413 -6.3250 37 1 5.9024 -1.5369 -2.4089 38 1 6.2198 -1.4039 -0.6626 39 1 3.9985 -2.4644 -0.2116 40 1 3.7655 -2.6660 -1.9647 41 1 5.0569 -4.3106 -3.1655 42 1 6.4845 -3.3228 -2.7694 43 1 7.5441 -5.2504 -1.6645 44 1 7.0932 -5.6852 -3.3310 45 1 6.1207 -6.0829 0.1676 46 1 4.7090 -7.0787 -0.2626 47 1 4.0673 -4.7364 0.3417 48 1 3.6369 -5.1405 -1.3379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269359175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:23 Heat of formation + Delta-G solvation = -21.645679 kcal Electronic energy + Delta-G solvation = -28395.121727 eV Core-core repulsion = 24578.140618 eV Total energy + Delta-G solvation = -3816.981109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.59692 -39.42162 -37.25518 -35.65019 -35.17439 -32.50231 -31.21314 -30.70799 -29.49038 -27.72574 -26.85941 -25.60039 -24.25902 -23.93748 -22.68562 -21.66926 -20.29802 -19.98052 -19.16605 -17.28621 -16.76355 -16.51115 -16.32431 -16.07389 -15.56778 -15.16465 -14.98784 -14.87321 -14.83046 -14.61387 -13.97956 -13.92236 -13.64818 -13.51626 -13.11806 -12.71684 -12.50692 -12.39117 -12.23393 -12.06953 -11.96198 -11.63993 -11.37241 -11.33465 -11.15225 -11.03598 -10.78540 -10.72222 -10.57072 -10.50061 -10.31862 -9.90341 -9.79272 -9.57575 -9.27908 -8.55912 -8.29694 -8.21582 -7.61018 -7.33643 -6.01202 -3.96922 1.25397 1.88909 2.19204 2.98636 3.30311 3.38098 3.41695 3.79637 3.85361 3.96778 4.45974 4.86798 4.92025 5.00373 5.10440 5.12296 5.17809 5.20918 5.23862 5.29416 5.32583 5.35615 5.52439 5.53970 5.60552 5.62080 5.66924 5.78199 5.82541 5.83204 5.94450 5.98087 6.06916 6.08070 6.12913 6.20460 6.42981 6.55042 6.68010 6.89493 6.91506 7.09244 7.16745 7.21063 7.57537 7.68229 7.93109 8.06621 8.70360 9.08054 9.61153 11.12066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008524 B = 0.004343 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.949348 B = 6446.261353 C = 8897.085390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.107 3.893 4 C -0.188 4.188 5 C -0.202 4.202 6 S 0.135 5.865 7 C -0.202 4.202 8 C 0.135 3.865 9 N -0.518 5.518 10 C 0.155 3.845 11 C -0.499 4.499 12 H 0.078 0.922 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.863 3.137 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.258 1.258 19 C 0.068 3.932 20 C 0.064 3.936 21 N -0.538 5.538 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.019 3.981 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.039 0.961 35 H -0.018 1.018 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -5.813 14.502 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.212 6.212 3 C 0.052 3.948 4 C -0.221 4.221 5 C -0.339 4.339 6 S 0.398 5.602 7 C -0.320 4.320 8 C 0.005 3.995 9 N -0.243 5.243 10 C 0.029 3.971 11 C -0.537 4.537 12 H 0.096 0.904 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.690 3.310 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.183 1.183 19 C -0.060 4.060 20 C -0.064 4.064 21 N -0.264 5.264 22 C -0.114 4.114 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.181 0.819 32 H 0.102 0.898 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.000 1.000 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.902 -5.285 14.305 16.018 hybrid contribution -1.137 0.776 0.037 1.377 sum -6.039 -4.509 14.341 16.201 Atomic orbital electron populations 1.22946 0.79462 1.03297 1.00688 1.86186 1.20095 1.25141 1.89761 1.17466 0.90801 0.84807 1.01734 1.20125 1.01079 0.91658 1.09241 1.25380 0.97081 1.02355 1.09049 1.84406 1.05311 0.98168 1.72283 1.23401 0.95390 0.97615 1.15557 1.20342 0.93997 0.93341 0.91780 1.61872 1.46876 1.03956 1.11549 1.20387 0.90681 0.90439 0.95641 1.20977 1.36298 1.08503 0.87948 0.90369 1.24856 0.95908 0.97720 0.94694 1.69894 1.46479 1.35936 1.01830 0.87027 0.80383 0.83717 0.79858 1.20389 1.21202 1.18259 1.21921 0.93708 0.88421 1.01955 1.22089 0.95086 0.87938 1.01252 1.62192 1.35286 1.02947 1.25977 1.22846 0.99354 0.98936 0.90285 1.22693 0.92756 0.86055 0.99726 1.87950 1.66955 1.40959 1.34958 1.22627 0.96440 0.96546 0.85577 1.22732 0.95358 0.91804 1.01059 0.88790 0.93491 0.93039 0.84298 0.81886 0.89791 0.95167 0.94293 0.99995 0.92800 0.89546 0.95223 0.91125 0.93778 0.93746 0.88700 0.92421 0.88520 0.92500 0.88875 0.89941 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.92 101.05 1.00 1.36 16 2 O -0.30 -4.72 10.17 -20.49 -0.21 -4.93 16 3 C 0.11 1.80 6.59 -41.04 -0.27 1.53 16 4 C -0.19 -2.70 9.16 -41.10 -0.38 -3.08 16 5 C -0.20 -2.85 11.22 29.05 0.33 -2.53 16 6 S 0.13 2.26 21.43 -107.50 -2.30 -0.04 16 7 C -0.20 -3.63 5.32 -35.92 -0.19 -3.83 16 8 C 0.13 2.45 5.12 -4.97 -0.03 2.43 16 9 N -0.52 -10.91 4.35 -237.53 -1.03 -11.95 16 10 C 0.15 3.76 3.68 -4.98 -0.02 3.74 16 11 C -0.50 -14.18 9.06 -34.44 -0.31 -14.49 16 12 H 0.08 2.44 8.01 -52.48 -0.42 2.02 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 15 Si 0.86 21.44 27.55 -169.99 -4.68 16.76 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 18 H -0.26 -6.07 6.43 56.52 0.36 -5.71 16 19 C 0.07 1.29 4.66 -3.83 -0.02 1.27 16 20 C 0.06 1.05 5.11 -3.83 -0.02 1.03 16 21 N -0.54 -7.83 4.73 -234.31 -1.11 -8.93 16 22 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 23 C 0.06 0.81 7.01 37.21 0.26 1.07 16 24 O -0.39 -5.23 10.83 -35.23 -0.38 -5.61 16 25 C 0.07 0.73 7.01 37.21 0.26 0.99 16 26 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.43 7.83 -51.93 -0.41 0.02 16 29 H 0.05 0.55 7.85 -51.93 -0.41 0.15 16 30 H 0.14 1.59 6.91 -52.49 -0.36 1.23 16 31 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.08 1.41 6.42 -51.93 -0.33 1.08 16 33 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.04 0.95 3.93 -51.93 -0.20 0.75 16 35 H -0.02 -0.43 7.63 -51.92 -0.40 -0.83 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.09 1.83 5.78 -51.93 -0.30 1.53 16 38 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.07 1.10 6.60 -51.93 -0.34 0.76 16 40 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.47 6.46 -51.93 -0.34 1.13 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -32.62 387.18 -10.37 -42.99 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.74 Total: 1.03 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.48 Total: -8.19 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -1.37 Total: -47.84 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.59 Total: -10.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.68 Total: 16.76 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.30 Total: -0.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.62 -10.37 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269359175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.347 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds