Wall clock time and date at job start Tue Mar 31 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42892 * 114.00260 * 2 1 4 4 C 1.53000 * 109.47236 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47011 * 65.00251 * 4 3 2 6 6 C 1.36022 * 117.00246 * 179.97438 * 5 4 3 7 7 C 1.38654 * 119.99279 * 0.30091 * 6 5 4 8 8 C 1.38120 * 120.03578 * 180.25388 * 7 6 5 9 9 C 1.38842 * 120.03108 * 359.44387 * 8 7 6 10 10 N 1.40103 * 120.01553 * 180.29809 * 9 8 7 11 11 C 1.34777 * 120.00287 * 144.90962 * 10 9 8 12 12 O 1.21288 * 119.99721 * 4.62955 * 11 10 9 13 13 C 1.50693 * 119.99907 * 184.62740 * 11 10 9 14 14 H 1.09000 * 109.47550 * 319.99973 * 13 11 10 15 15 N 1.46904 * 109.47074 * 200.00031 * 13 11 10 16 16 C 1.53002 * 109.47291 * 80.00261 * 13 11 10 17 17 C 1.53000 * 109.47175 * 184.99874 * 16 13 11 18 18 C 1.50699 * 109.47111 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99722 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99744 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47617 * 60.00092 * 22 20 18 24 24 H 1.48510 * 109.47166 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47164 * 299.99605 * 22 20 18 26 26 C 1.38839 * 119.98059 * 0.27871 * 9 8 7 27 27 C 1.38276 * 119.96144 * 359.97438 * 26 9 8 28 28 F 1.35095 * 120.00990 * 180.02562 * 27 26 9 29 29 H 1.09004 * 109.46353 * 59.99606 * 1 2 3 30 30 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46849 * 300.00184 * 1 2 3 32 32 H 1.09001 * 109.46774 * 60.00202 * 3 2 1 33 33 H 1.08995 * 109.47541 * 300.00143 * 3 2 1 34 34 H 1.08998 * 109.47290 * 305.00155 * 4 3 2 35 35 H 1.09000 * 109.47157 * 185.00150 * 4 3 2 36 36 H 1.07999 * 119.97866 * 359.97438 * 7 6 5 37 37 H 1.08011 * 119.98329 * 179.72511 * 8 7 6 38 38 H 0.97000 * 119.99482 * 324.91769 * 10 9 8 39 39 H 1.00898 * 111.00122 * 300.00085 * 15 13 11 40 40 H 1.00901 * 110.99519 * 63.95577 * 15 13 11 41 41 H 1.09001 * 109.46948 * 304.99370 * 16 13 11 42 42 H 1.08994 * 109.47141 * 64.99928 * 16 13 11 43 43 H 1.08998 * 109.47093 * 300.00300 * 17 16 13 44 44 H 1.09008 * 109.47056 * 59.99862 * 17 16 13 45 45 H 0.97003 * 120.00113 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.01839 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3043 0.3980 -1.3814 7 6 6.1821 0.7894 -0.3820 8 6 7.5417 0.6107 -0.5470 9 6 8.0300 0.0283 -1.7089 10 7 9.4088 -0.1586 -1.8733 11 6 9.8686 -1.2438 -2.5271 12 8 9.0890 -2.0147 -3.0458 13 6 11.3512 -1.4991 -2.6137 14 1 11.8732 -0.5568 -2.7798 15 7 11.6261 -2.4145 -3.7293 16 6 11.8376 -2.1280 -1.3064 17 6 13.3603 -2.2726 -1.3456 18 6 13.8394 -2.8914 -0.0578 19 1 13.1289 -3.1555 0.7115 20 6 15.1848 -3.1213 0.1379 21 7 16.0498 -2.8001 -0.7991 22 14 15.7786 -3.8890 1.7339 23 1 15.1580 -5.2278 1.9003 24 1 17.2565 -4.0292 1.6960 25 1 15.3936 -3.0196 2.8747 26 6 7.1515 -0.3694 -2.7078 27 6 5.7909 -0.1854 -2.5443 28 9 4.9352 -0.5724 -3.5154 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6887 1.8462 0.8900 33 1 1.6888 1.8463 -0.8899 34 1 3.8509 0.5684 0.8427 35 1 3.9786 2.1764 0.0902 36 1 5.8028 1.2385 0.5240 37 1 8.2250 0.9200 0.2301 38 1 10.0324 0.4931 -1.5164 39 1 11.1530 -3.2960 -3.5988 40 1 11.3729 -1.9954 -4.6116 41 1 11.5547 -1.4901 -0.4691 42 1 11.3824 -3.1108 -1.1846 43 1 13.6432 -2.9104 -2.1830 44 1 13.8156 -1.2897 -1.4675 45 1 16.9964 -2.9615 -0.6613 46 1 7.5308 -0.8221 -3.6121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424107432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:45 Heat of formation + Delta-G solvation = -167.933840 kcal Electronic energy + Delta-G solvation = -28553.841738 eV Core-core repulsion = 24164.303922 eV Total energy + Delta-G solvation = -4389.537816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.92384 -41.83078 -40.81598 -39.09010 -38.30595 -36.80283 -35.50507 -34.80579 -32.04778 -31.91564 -31.63177 -29.87598 -28.01091 -27.28380 -25.72569 -24.92889 -23.47298 -23.12997 -22.14595 -21.22827 -19.64095 -19.10591 -18.71769 -18.22751 -17.89210 -17.44492 -17.13306 -16.92674 -16.82191 -16.65046 -16.45361 -16.16990 -15.98027 -15.85443 -15.67521 -15.28597 -15.08185 -14.61925 -14.25895 -14.10126 -13.88015 -13.62575 -13.59947 -13.41491 -13.16404 -12.84630 -12.76345 -12.53183 -12.47915 -12.28280 -12.25076 -11.95460 -11.72769 -11.60067 -11.24396 -11.03540 -10.94041 -10.68846 -10.46137 -10.01150 -9.68212 -8.87394 -8.11590 -6.21389 0.00409 0.05592 1.37807 1.44082 1.46134 1.53721 1.88610 2.07397 2.46346 2.49682 2.79384 3.13772 3.21744 3.48480 3.62900 3.73488 3.89876 4.02580 4.05866 4.10291 4.10443 4.29699 4.32673 4.33817 4.43464 4.49288 4.52835 4.56557 4.71822 4.79915 4.84711 4.87518 4.94949 5.03562 5.07104 5.23597 5.27556 5.59907 5.65062 5.87610 6.01412 6.06978 6.15537 6.28567 6.32550 6.33068 6.50730 6.97429 6.99658 7.46593 8.99163 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.001908 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.996029 B =14672.541729 C =15672.380438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.057 3.943 4 C 0.048 3.952 5 O -0.325 6.325 6 C 0.080 3.920 7 C -0.152 4.152 8 C -0.097 4.097 9 C 0.126 3.874 10 N -0.654 5.654 11 C 0.489 3.511 12 O -0.561 6.561 13 C 0.091 3.909 14 H 0.120 0.880 15 N -0.819 5.819 16 C -0.083 4.083 17 C 0.038 3.962 18 C -0.544 4.544 19 H 0.056 0.944 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.957 3.043 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.135 4.135 27 C 0.055 3.945 28 F -0.148 7.148 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.180 0.820 37 H 0.173 0.827 38 H 0.432 0.568 39 H 0.346 0.654 40 H 0.348 0.652 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.005 0.995 44 H -0.002 1.002 45 H 0.261 0.739 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.026 15.375 3.509 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.019 4.019 4 C -0.026 4.026 5 O -0.240 6.240 6 C 0.033 3.967 7 C -0.170 4.170 8 C -0.117 4.117 9 C 0.031 3.969 10 N -0.301 5.301 11 C 0.276 3.724 12 O -0.439 6.439 13 C -0.025 4.025 14 H 0.138 0.862 15 N -0.347 5.347 16 C -0.121 4.121 17 C 0.001 3.999 18 C -0.582 4.582 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.156 4.156 27 C 0.035 3.965 28 F -0.127 7.127 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.130 0.870 36 H 0.197 0.803 37 H 0.191 0.809 38 H 0.272 0.728 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.070 0.930 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.639 14.619 3.151 31.425 hybrid contribution -0.494 -0.264 0.146 0.579 sum -28.133 14.356 3.298 31.756 Atomic orbital electron populations 1.22908 0.79375 1.03622 1.01093 1.87933 1.21635 1.28837 1.95680 1.22792 0.90934 0.85197 1.02972 1.23314 0.94589 0.99733 0.84986 1.86185 1.18649 1.77649 1.41468 1.19053 0.84419 0.99141 0.94083 1.21304 0.92343 1.03929 0.99470 1.21202 0.95912 0.99341 0.95284 1.17578 0.83721 1.01407 0.94189 1.43558 1.05178 1.24892 1.56502 1.22782 0.93561 0.79656 0.76435 1.90667 1.58950 1.47519 1.46751 1.21686 0.87268 0.99122 0.94457 0.86196 1.58984 1.64852 1.06927 1.03981 1.21418 0.97829 0.99332 0.93530 1.18839 0.90274 0.95556 0.95244 1.21714 0.92563 1.40823 1.03104 0.92569 1.25870 0.97342 0.96336 0.99979 1.70091 1.02363 1.49200 1.35220 0.85627 0.76935 0.79136 0.80071 1.19834 1.21101 1.18956 1.20980 0.90489 1.03006 1.01122 1.17022 0.87178 1.05392 0.86957 1.91440 1.69985 1.89529 1.61743 0.93471 0.89372 0.92093 0.87717 0.92095 0.90135 0.86961 0.80284 0.80944 0.72843 0.84062 0.83873 0.90798 0.94046 0.97670 0.98335 0.93002 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.44 10.67 -144.34 -1.54 -8.98 16 3 C 0.06 0.62 6.32 71.98 0.45 1.08 16 4 C 0.05 0.56 5.12 71.98 0.37 0.93 16 5 O -0.33 -7.18 9.97 -89.16 -0.89 -8.06 16 6 C 0.08 1.80 6.69 22.53 0.15 1.95 16 7 C -0.15 -2.33 9.03 22.34 0.20 -2.12 16 8 C -0.10 -1.57 9.96 22.39 0.22 -1.34 16 9 C 0.13 2.88 6.30 38.11 0.24 3.12 16 10 N -0.65 -14.28 5.34 -303.42 -1.62 -15.90 16 11 C 0.49 14.01 6.91 87.65 0.61 14.62 16 12 O -0.56 -19.68 13.69 -3.06 -0.04 -19.72 16 13 C 0.09 2.76 3.15 44.17 0.14 2.90 16 14 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 15 N -0.82 -26.35 8.44 -171.80 -1.45 -27.80 16 16 C -0.08 -3.13 4.78 30.60 0.15 -2.98 16 17 C 0.04 1.90 4.86 29.85 0.15 2.05 16 18 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 19 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 20 C 0.00 0.15 5.46 84.66 0.46 0.61 16 21 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 22 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 26 C -0.13 -3.79 8.67 22.42 0.19 -3.59 16 27 C 0.05 1.55 7.31 22.44 0.16 1.71 16 28 F -0.15 -4.75 17.11 44.97 0.77 -3.98 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.84 7.65 -2.39 -0.02 0.82 16 35 H 0.11 0.56 7.67 -2.39 -0.02 0.54 16 36 H 0.18 1.30 6.29 -2.91 -0.02 1.28 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.43 6.52 8.82 -92.71 -0.82 5.70 16 39 H 0.35 11.56 8.58 -89.70 -0.77 10.79 16 40 H 0.35 9.54 9.06 -89.69 -0.81 8.73 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 44 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 45 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.13 4.31 6.22 -2.91 -0.02 4.29 16 Total: -1.00 -78.10 393.47 1.15 -76.94 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -1.36 Total: 26.60 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.98 Total: -9.41 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -2.79 Total: -99.10 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.47 Total: -36.76 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.77 Total: -3.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -78.10 1.15 -76.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424107432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.992 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds