Wall clock time and date at job start Tue Mar 31 2020 23:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48497 * 109.47198 * 270.00352 * 3 2 1 5 5 H 1.48500 * 109.47048 * 30.00202 * 3 2 1 6 6 H 1.48499 * 109.46789 * 150.00496 * 3 2 1 7 7 C 1.37879 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99109 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00673 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47330 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99873 * 169.99878 * 10 9 7 12 12 C 1.53245 * 109.33905 * 187.25330 * 11 10 9 13 13 N 1.47079 * 108.51833 * 306.17128 * 12 11 10 14 14 C 1.34778 * 120.87887 * 231.18323 * 13 12 11 15 15 O 1.21598 * 119.99705 * 5.20422 * 14 13 12 16 16 N 1.34767 * 120.00074 * 185.20179 * 14 13 12 17 17 C 1.39725 * 120.00095 * 185.70748 * 16 14 13 18 18 C 1.37750 * 120.25137 * 24.84925 * 17 16 14 19 19 C 1.39169 * 120.83905 * 179.97438 * 18 17 16 20 20 C 1.36201 * 120.96178 * 0.02562 * 19 18 17 21 21 C 1.40405 * 119.90693 * 359.97438 * 20 19 18 22 22 C 1.40804 * 121.30242 * 179.97438 * 21 20 19 23 23 C 1.36573 * 118.16012 * 180.02562 * 22 21 20 24 24 C 1.39333 * 119.92749 * 0.02562 * 23 22 21 25 25 N 1.31086 * 121.72009 * 359.97438 * 24 23 22 26 26 C 1.33570 * 121.34190 * 0.02562 * 25 24 23 27 27 C 1.47073 * 118.23849 * 51.45684 * 13 12 11 28 28 C 1.46900 * 111.00148 * 294.29945 * 10 9 7 29 29 H 0.96997 * 119.99907 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46737 * 59.99402 * 9 7 2 31 31 H 1.09002 * 109.46628 * 300.00101 * 9 7 2 32 32 H 1.08996 * 109.49548 * 67.29709 * 11 10 9 33 33 H 1.09007 * 109.49258 * 307.20965 * 11 10 9 34 34 H 1.09002 * 109.62816 * 186.45704 * 12 11 10 35 35 H 1.09002 * 109.62757 * 65.88335 * 12 11 10 36 36 H 0.96996 * 120.00681 * 5.71137 * 16 14 13 37 37 H 1.08001 * 119.58070 * 359.95131 * 18 17 16 38 38 H 1.07996 * 119.52457 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.04792 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.92080 * 0.04090 * 22 21 20 41 41 H 1.08000 * 120.03197 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.13421 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.62941 * 68.25367 * 27 13 12 44 44 H 1.09002 * 109.62742 * 188.82715 * 27 13 12 45 45 H 1.09000 * 109.48845 * 292.70545 * 28 10 9 46 46 H 1.08996 * 109.49288 * 52.75608 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5213 -4.8936 0.2364 12 6 2.5640 -6.0034 0.4079 13 7 3.4609 -5.9859 -0.7577 14 6 3.7107 -7.1117 -1.4553 15 8 3.1201 -8.1392 -1.1831 16 7 4.6149 -7.0987 -2.4545 17 6 4.7882 -8.2309 -3.2548 18 6 3.7649 -9.1416 -3.3995 19 6 3.9239 -10.2731 -4.1940 20 6 5.0944 -10.5107 -4.8487 21 6 6.1611 -9.6060 -4.7264 22 6 7.3840 -9.8229 -5.3897 23 6 8.3787 -8.9016 -5.2252 24 6 8.1664 -7.7859 -4.4180 25 7 7.0263 -7.5877 -3.8022 26 6 6.0133 -8.4502 -3.9212 27 6 4.0827 -4.7085 -1.1381 28 6 2.9757 -3.6486 -1.2523 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 0.8791 -5.1261 -0.6130 33 1 0.9169 -4.8196 1.1405 34 1 2.0635 -6.9697 0.4703 35 1 3.1404 -5.8271 1.3161 36 1 5.1456 -6.3034 -2.6181 37 1 2.8273 -8.9756 -2.8898 38 1 3.1077 -10.9734 -4.2922 39 1 5.2019 -11.3938 -5.4611 40 1 7.5313 -10.6936 -6.0115 41 1 9.3292 -9.0382 -5.7196 42 1 8.9617 -7.0652 -4.2973 43 1 4.8023 -4.4102 -0.3757 44 1 4.5868 -4.8183 -2.0983 45 1 2.3131 -3.8985 -2.0809 46 1 3.4256 -2.6715 -1.4282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601256831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:27 Heat of formation + Delta-G solvation = 53.907043 kcal Electronic energy + Delta-G solvation = -28781.355657 eV Core-core repulsion = 24864.499559 eV Total energy + Delta-G solvation = -3916.856098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38404 -40.28268 -38.06893 -36.97300 -35.25221 -34.50822 -32.91617 -32.35749 -30.82330 -30.71951 -29.31452 -28.00525 -25.55984 -24.53427 -23.92417 -23.41617 -22.74880 -21.71863 -20.70454 -19.62962 -18.54328 -18.29886 -17.36924 -16.92426 -16.41236 -16.11423 -15.66787 -15.24258 -14.75588 -14.70912 -14.63192 -14.45120 -14.28113 -13.95862 -13.75653 -13.66463 -13.50802 -13.27396 -13.10161 -12.47908 -12.19394 -12.08035 -11.92309 -11.66661 -11.32410 -11.17747 -11.09168 -10.97864 -10.79427 -10.65133 -10.56403 -10.06494 -9.95778 -9.89949 -9.74962 -9.30055 -8.99178 -8.58916 -8.48064 -7.77443 -7.35661 -6.08221 -4.10400 0.18104 0.58973 1.71935 2.49072 2.71795 3.14335 3.27996 3.34857 3.38460 3.73280 3.90091 3.98923 4.36884 4.39778 4.48328 4.62680 4.69218 4.75081 4.98636 5.00946 5.19508 5.21894 5.27563 5.31564 5.35781 5.43718 5.57560 5.61348 5.69288 5.71642 5.80884 5.90419 5.99959 6.01179 6.12297 6.25781 6.32508 6.39211 6.41504 6.42113 6.58048 6.78013 6.91728 7.19359 7.25838 7.61611 7.71196 7.79587 7.98542 8.09271 8.43634 8.45300 8.96717 9.54236 11.02556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.002384 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.400128 B =11742.465425 C =12848.522604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.135 3.865 13 N -0.617 5.617 14 C 0.706 3.294 15 O -0.579 6.579 16 N -0.670 5.670 17 C 0.201 3.799 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.079 4.079 22 C -0.061 4.061 23 C -0.173 4.173 24 C 0.123 3.877 25 N -0.471 5.471 26 C 0.103 3.897 27 C 0.111 3.889 28 C 0.052 3.948 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.290 -20.160 -10.939 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C 0.012 3.988 13 N -0.353 5.353 14 C 0.408 3.592 15 O -0.458 6.458 16 N -0.317 5.317 17 C 0.102 3.898 18 C -0.155 4.155 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.082 4.082 22 C -0.088 4.088 23 C -0.193 4.193 24 C -0.050 4.050 25 N -0.179 5.179 26 C -0.021 4.021 27 C -0.013 4.013 28 C -0.077 4.077 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.255 0.745 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.748 -19.847 -9.691 26.016 hybrid contribution 0.312 0.601 -1.311 1.475 sum 14.060 -19.246 -11.002 26.251 Atomic orbital electron populations 1.69957 1.06097 1.26885 1.50710 1.25000 0.94869 0.99378 0.95349 0.86493 0.79816 0.83055 0.78033 1.20741 1.21242 1.19725 1.21131 0.93456 0.89860 1.50429 0.91799 1.19728 0.89980 0.87127 0.96279 1.62077 1.28171 1.02786 1.32992 1.22434 0.94955 0.90469 1.01071 1.21725 0.91131 0.99725 0.86221 1.47453 1.49138 1.06947 1.31747 1.15798 0.80195 0.84076 0.79084 1.90847 1.53812 1.30874 1.70260 1.42649 1.41031 1.15846 1.32127 1.17266 0.91375 0.88911 0.92261 1.21492 0.99669 0.94595 0.99780 1.20824 0.97513 0.96642 0.94920 1.20856 0.93046 0.99470 1.02024 1.18579 0.95576 0.95520 0.98501 1.21442 0.91697 0.98788 0.96824 1.21872 1.00516 0.95996 1.00912 1.22876 0.94366 0.95919 0.91881 1.67800 1.00391 1.29148 1.20591 1.18511 0.92229 0.92498 0.98827 1.22059 0.96459 0.82900 0.99839 1.22384 0.94966 0.98831 0.91527 0.92850 0.99099 0.94934 0.95410 0.89855 0.89081 0.90857 0.74546 0.82570 0.85212 0.85377 0.84361 0.84585 0.82368 0.90193 0.91092 0.95606 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 9 C 0.19 4.88 4.72 -4.98 -0.02 4.85 16 10 N -0.54 -10.97 4.62 -235.47 -1.09 -12.06 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.13 2.08 6.61 -3.60 -0.02 2.05 16 13 N -0.62 -9.47 3.00 -177.91 -0.53 -10.00 16 14 C 0.71 11.18 8.11 -86.93 -0.70 10.47 16 15 O -0.58 -10.36 12.97 5.28 0.07 -10.29 16 16 N -0.67 -9.33 5.13 -13.97 -0.07 -9.40 16 17 C 0.20 2.76 6.47 -83.32 -0.54 2.22 16 18 C -0.13 -1.73 8.70 -39.41 -0.34 -2.07 16 19 C -0.08 -0.81 9.94 -39.97 -0.40 -1.21 16 20 C -0.13 -1.22 9.76 -39.50 -0.39 -1.61 16 21 C -0.08 -0.83 5.74 -106.81 -0.61 -1.44 16 22 C -0.06 -0.47 9.89 -39.21 -0.39 -0.86 16 23 C -0.17 -1.21 10.03 -39.78 -0.40 -1.60 16 24 C 0.12 1.06 11.15 -17.46 -0.19 0.87 16 25 N -0.47 -5.59 9.78 -10.86 -0.11 -5.69 16 26 C 0.10 1.29 6.62 -84.70 -0.56 0.73 16 27 C 0.11 1.59 6.52 -3.37 -0.02 1.57 16 28 C 0.05 0.94 5.47 -3.47 -0.02 0.93 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 34 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.42 5.23 6.02 -40.82 -0.25 4.98 16 37 H 0.16 2.29 5.74 -52.49 -0.30 1.99 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 0.85 5.85 -51.93 -0.30 0.55 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 1.88 6.67 -51.93 -0.35 1.53 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.67 372.56 -11.55 -44.22 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.13 Total: 4.03 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -5.02 Total: 2.96 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -1.06 Total: -62.60 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.67 -11.55 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601256831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.130 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds