Wall clock time and date at job start Tue Mar 31 2020 23:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 119.99666 * 2 1 4 4 H 1.48505 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46952 * 299.99450 * 3 2 1 6 6 H 1.48497 * 109.46989 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00413 * 184.60462 * 7 2 1 9 9 N 1.36937 * 119.99883 * 4.60349 * 7 2 1 10 10 C 1.46927 * 120.63136 * 144.80283 * 9 7 2 11 11 C 1.53196 * 108.89147 * 126.34135 * 10 9 7 12 12 C 1.53347 * 109.14826 * 54.57725 * 11 10 9 13 13 N 1.46499 * 109.41742 * 178.67096 * 12 11 10 14 14 C 1.34779 * 120.00028 * 275.12956 * 13 12 11 15 15 O 1.21587 * 120.00376 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99922 * 179.97438 * 14 13 12 17 17 C 1.39716 * 120.00010 * 185.76057 * 16 14 13 18 18 C 1.37751 * 120.25208 * 24.81353 * 17 16 14 19 19 C 1.39168 * 120.84016 * 179.80867 * 18 17 16 20 20 C 1.36199 * 120.96066 * 0.41776 * 19 18 17 21 21 C 1.40403 * 119.90470 * 359.81364 * 20 19 18 22 22 C 1.40810 * 121.29760 * 179.97438 * 21 20 19 23 23 C 1.36556 * 118.16054 * 180.02562 * 22 21 20 24 24 C 1.39330 * 119.93323 * 0.02562 * 23 22 21 25 25 N 1.31093 * 121.71935 * 0.02562 * 24 23 22 26 26 C 1.33576 * 121.33466 * 359.95816 * 25 24 23 27 27 C 1.53037 * 109.61207 * 298.71027 * 12 11 10 28 28 C 1.46929 * 120.63007 * 324.82049 * 9 7 2 29 29 H 0.97007 * 120.00570 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58549 * 246.19719 * 10 9 7 31 31 H 1.08997 * 109.58547 * 6.48406 * 10 9 7 32 32 H 1.09009 * 109.49189 * 174.65456 * 11 10 9 33 33 H 1.08995 * 109.49996 * 294.75109 * 11 10 9 34 34 H 1.09006 * 109.42167 * 58.75207 * 12 11 10 35 35 H 0.96999 * 120.00057 * 95.12531 * 13 12 11 36 36 H 0.97000 * 119.99925 * 5.76270 * 16 14 13 37 37 H 1.08004 * 119.58083 * 359.96550 * 18 17 16 38 38 H 1.07997 * 119.51896 * 180.23477 * 19 18 17 39 39 H 1.07999 * 120.04606 * 179.84280 * 20 19 18 40 40 H 1.08001 * 120.91756 * 0.03414 * 22 21 20 41 41 H 1.07999 * 120.03855 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.14496 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.49514 * 301.42795 * 27 12 11 44 44 H 1.08993 * 109.50129 * 181.32575 * 27 12 11 45 45 H 1.09005 * 109.58770 * 353.38100 * 28 9 7 46 46 H 1.09001 * 109.58210 * 113.65765 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0877 -1.2035 0.0756 9 7 1.3289 -2.3861 -0.0941 10 6 1.9004 -3.5218 -0.8305 11 6 1.9144 -4.7501 0.0849 12 6 0.4988 -4.9935 0.6218 13 7 0.4990 -6.1858 1.4730 14 6 0.3638 -7.4079 0.9210 15 8 0.2411 -7.5209 -0.2834 16 7 0.3645 -8.5049 1.7041 17 6 0.3457 -9.7764 1.1254 18 6 0.8265 -9.9648 -0.1517 19 6 0.8172 -11.2267 -0.7385 20 6 0.3253 -12.3067 -0.0702 21 6 -0.1781 -12.1545 1.2316 22 6 -0.6940 -13.2508 1.9491 23 6 -1.1677 -13.0299 3.2107 24 6 -1.1317 -11.7466 3.7521 25 7 -0.6515 -10.7284 3.0804 26 6 -0.1725 -10.8767 1.8423 27 6 0.0446 -3.7828 1.4403 28 6 0.0124 -2.5449 0.5385 29 1 -0.4851 0.8401 -0.0004 30 1 1.2925 -3.7294 -1.7112 31 1 2.9187 -3.2832 -1.1374 32 1 2.2478 -5.6209 -0.4798 33 1 2.5941 -4.5746 0.9188 34 1 -0.1848 -5.1441 -0.2138 35 1 0.5966 -6.0957 2.4338 36 1 0.3781 -8.4116 2.6695 37 1 1.2180 -9.1231 -0.7036 38 1 1.2030 -11.3508 -1.7396 39 1 0.3230 -13.2788 -0.5408 40 1 -0.7144 -14.2389 1.5138 41 1 -1.5705 -13.8489 3.7880 42 1 -1.5101 -11.5863 4.7508 43 1 0.7418 -3.6166 2.2615 44 1 -0.9523 -3.9674 1.8405 45 1 -0.2143 -1.6625 1.1371 46 1 -0.7498 -2.6702 -0.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:31 Heat of formation + Delta-G solvation = 53.352107 kcal Electronic energy + Delta-G solvation = -28552.558971 eV Core-core repulsion = 24635.678810 eV Total energy + Delta-G solvation = -3916.880161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.33496 -40.09306 -37.82357 -36.93764 -35.18268 -34.44186 -32.94215 -32.02821 -30.75662 -30.17803 -29.58800 -28.66038 -25.12371 -24.50390 -23.92782 -22.86116 -22.16792 -21.53677 -20.63160 -19.54399 -18.76728 -18.18121 -17.64994 -16.99445 -16.66703 -16.05411 -15.48734 -15.10473 -14.86885 -14.69973 -14.50561 -14.34539 -13.95616 -13.71570 -13.58930 -13.48989 -13.30093 -12.99832 -12.66890 -12.32888 -12.32392 -12.08393 -11.66601 -11.49714 -11.16910 -10.92375 -10.89313 -10.80198 -10.44834 -10.25459 -10.09447 -9.99050 -9.94391 -9.85647 -9.74486 -9.55303 -8.99641 -8.74243 -8.45560 -7.77975 -6.56995 -5.79672 -3.32244 0.17497 0.58239 1.71800 2.57919 2.72660 3.22503 3.36220 3.44004 3.45741 3.88952 3.98034 4.15408 4.39965 4.47411 4.48255 4.61780 4.69524 4.98939 5.04417 5.22859 5.33501 5.37445 5.42569 5.52573 5.58543 5.62111 5.68145 5.89215 5.91925 5.99012 6.10849 6.12360 6.26740 6.32727 6.36265 6.41785 6.52008 6.58756 6.63438 6.79307 6.80770 6.87656 6.97956 7.06793 7.40447 7.59717 7.78058 7.78192 7.97966 8.52215 8.56312 9.23958 9.82734 10.42473 11.26544 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.002037 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.149558 B =13743.194302 C =14334.344253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C -0.140 4.140 12 C 0.167 3.833 13 N -0.730 5.730 14 C 0.700 3.300 15 O -0.572 6.572 16 N -0.673 5.673 17 C 0.201 3.799 18 C -0.131 4.131 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.080 4.080 22 C -0.061 4.061 23 C -0.174 4.174 24 C 0.121 3.879 25 N -0.472 5.472 26 C 0.102 3.898 27 C -0.147 4.147 28 C 0.169 3.831 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.394 0.606 36 H 0.413 0.587 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 -27.200 6.795 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.063 3.937 13 N -0.383 5.383 14 C 0.401 3.599 15 O -0.449 6.449 16 N -0.318 5.318 17 C 0.102 3.898 18 C -0.154 4.154 19 C -0.098 4.098 20 C -0.155 4.155 21 C -0.082 4.082 22 C -0.087 4.087 23 C -0.194 4.194 24 C -0.052 4.052 25 N -0.179 5.179 26 C -0.021 4.021 27 C -0.188 4.188 28 C 0.042 3.958 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.227 0.773 36 H 0.249 0.751 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.175 0.825 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.124 0.876 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.318 -26.071 5.992 26.784 hybrid contribution 0.316 -0.030 0.680 0.750 sum -1.003 -26.102 6.672 26.960 Atomic orbital electron populations 1.69869 1.05353 1.25369 1.54349 1.25330 0.95574 0.98312 0.99883 0.86204 0.79382 0.83847 0.77275 1.20235 1.21490 1.21699 1.19205 0.90891 0.83130 1.44921 0.91763 1.44053 1.19104 1.10013 1.58615 1.20896 0.97586 0.87000 0.92458 1.22460 0.95912 0.99302 1.00333 1.21089 0.97920 0.81685 0.92964 1.45630 1.76981 1.04769 1.10907 1.16015 0.78040 0.80485 0.85394 1.90882 1.56340 1.85161 1.12503 1.42541 1.75766 1.02954 1.10520 1.17243 0.96641 0.82659 0.93232 1.21523 1.00345 0.98951 0.94622 1.20845 0.97315 0.91769 0.99903 1.20859 1.01547 0.99543 0.93509 1.18581 1.00506 0.93325 0.95783 1.21443 0.94786 0.98323 0.94162 1.21855 1.01947 0.98866 0.96719 1.22855 0.94833 0.88163 0.99341 1.67796 1.09726 1.33904 1.06517 1.18521 0.99882 0.91924 0.91815 1.22600 0.99602 0.96611 0.99940 1.20987 0.86566 0.94294 0.93920 0.93510 0.96122 0.92590 0.92691 0.92442 0.89903 0.77269 0.75088 0.82425 0.85159 0.85380 0.84369 0.84625 0.82461 0.92278 0.92808 0.87550 0.96370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 10.58 55.49 0.59 -25.21 16 2 C 0.01 0.20 5.33 -17.44 -0.09 0.11 16 3 Si 0.90 21.47 29.56 -169.99 -5.02 16.45 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.84 9.56 -15.06 -0.14 -6.99 16 8 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.59 -14.85 3.00 -172.31 -0.52 -15.36 16 10 C 0.15 3.17 6.50 -3.71 -0.02 3.15 16 11 C -0.14 -2.56 5.68 -26.45 -0.15 -2.71 16 12 C 0.17 2.93 2.42 -67.73 -0.16 2.77 16 13 N -0.73 -10.54 5.08 -58.48 -0.30 -10.84 16 14 C 0.70 10.81 8.32 -86.91 -0.72 10.09 16 15 O -0.57 -10.65 13.18 5.29 0.07 -10.58 16 16 N -0.67 -8.73 5.28 -13.97 -0.07 -8.80 16 17 C 0.20 2.68 6.47 -83.33 -0.54 2.14 16 18 C -0.13 -1.71 8.70 -39.41 -0.34 -2.06 16 19 C -0.08 -0.81 9.94 -39.97 -0.40 -1.21 16 20 C -0.13 -1.23 9.76 -39.50 -0.39 -1.61 16 21 C -0.08 -0.82 5.74 -106.82 -0.61 -1.43 16 22 C -0.06 -0.46 9.89 -39.22 -0.39 -0.85 16 23 C -0.17 -1.17 10.03 -39.78 -0.40 -1.57 16 24 C 0.12 1.00 11.15 -17.46 -0.19 0.81 16 25 N -0.47 -5.34 9.78 -10.86 -0.11 -5.44 16 26 C 0.10 1.25 6.62 -84.70 -0.56 0.69 16 27 C -0.15 -2.73 5.55 -26.61 -0.15 -2.87 16 28 C 0.17 3.98 5.27 -3.71 -0.02 3.96 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 35 H 0.39 4.60 8.62 -40.82 -0.35 4.25 16 36 H 0.41 4.49 8.39 -40.82 -0.34 4.15 16 37 H 0.16 2.34 5.74 -52.48 -0.30 2.03 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.11 2.81 5.88 -51.93 -0.31 2.50 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.54 374.15 -11.31 -43.85 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.30 Total: 7.87 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -5.29 Total: 2.43 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.41 Total: -65.66 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.54 -11.31 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.205 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds