Wall clock time and date at job start Tue Mar 31 2020 23:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 119.99666 * 2 1 4 4 H 1.48505 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46952 * 299.99450 * 3 2 1 6 6 H 1.48497 * 109.46989 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00468 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00413 * 184.60462 * 7 2 1 9 9 N 1.36937 * 119.99883 * 4.60349 * 7 2 1 10 10 C 1.46927 * 120.63136 * 144.80283 * 9 7 2 11 11 C 1.53196 * 108.89147 * 126.34135 * 10 9 7 12 12 C 1.53347 * 109.14826 * 54.57725 * 11 10 9 13 13 N 1.46499 * 109.41742 * 178.67096 * 12 11 10 14 14 C 1.34779 * 120.00028 * 275.12956 * 13 12 11 15 15 O 1.21587 * 120.00376 * 359.97438 * 14 13 12 16 16 N 1.34782 * 119.99922 * 179.97438 * 14 13 12 17 17 C 1.39716 * 120.00010 * 185.76057 * 16 14 13 18 18 C 1.37751 * 120.25208 * 24.81353 * 17 16 14 19 19 C 1.39168 * 120.84016 * 179.80867 * 18 17 16 20 20 C 1.36199 * 120.96066 * 0.41776 * 19 18 17 21 21 C 1.40403 * 119.90470 * 359.81364 * 20 19 18 22 22 C 1.40810 * 121.29760 * 179.97438 * 21 20 19 23 23 C 1.36556 * 118.16054 * 180.02562 * 22 21 20 24 24 C 1.39330 * 119.93323 * 0.02562 * 23 22 21 25 25 N 1.31093 * 121.71935 * 0.02562 * 24 23 22 26 26 C 1.33576 * 121.33466 * 359.95816 * 25 24 23 27 27 C 1.53037 * 109.61207 * 298.71027 * 12 11 10 28 28 C 1.46929 * 120.63007 * 324.82049 * 9 7 2 29 29 H 0.97007 * 120.00570 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.58549 * 246.19719 * 10 9 7 31 31 H 1.08997 * 109.58547 * 6.48406 * 10 9 7 32 32 H 1.09009 * 109.49189 * 174.65456 * 11 10 9 33 33 H 1.08995 * 109.49996 * 294.75109 * 11 10 9 34 34 H 1.09006 * 109.42167 * 58.75207 * 12 11 10 35 35 H 0.96999 * 120.00057 * 95.12531 * 13 12 11 36 36 H 0.97000 * 119.99925 * 5.76270 * 16 14 13 37 37 H 1.08004 * 119.58083 * 359.96550 * 18 17 16 38 38 H 1.07997 * 119.51896 * 180.23477 * 19 18 17 39 39 H 1.07999 * 120.04606 * 179.84280 * 20 19 18 40 40 H 1.08001 * 120.91756 * 0.03414 * 22 21 20 41 41 H 1.07999 * 120.03855 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.14496 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.49514 * 301.42795 * 27 12 11 44 44 H 1.08993 * 109.50129 * 181.32575 * 27 12 11 45 45 H 1.09005 * 109.58770 * 353.38100 * 28 9 7 46 46 H 1.09001 * 109.58210 * 113.65765 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0877 -1.2035 0.0756 9 7 1.3289 -2.3861 -0.0941 10 6 1.9004 -3.5218 -0.8305 11 6 1.9144 -4.7501 0.0849 12 6 0.4988 -4.9935 0.6218 13 7 0.4990 -6.1858 1.4730 14 6 0.3638 -7.4079 0.9210 15 8 0.2411 -7.5209 -0.2834 16 7 0.3645 -8.5049 1.7041 17 6 0.3457 -9.7764 1.1254 18 6 0.8265 -9.9648 -0.1517 19 6 0.8172 -11.2267 -0.7385 20 6 0.3253 -12.3067 -0.0702 21 6 -0.1781 -12.1545 1.2316 22 6 -0.6940 -13.2508 1.9491 23 6 -1.1677 -13.0299 3.2107 24 6 -1.1317 -11.7466 3.7521 25 7 -0.6515 -10.7284 3.0804 26 6 -0.1725 -10.8767 1.8423 27 6 0.0446 -3.7828 1.4403 28 6 0.0124 -2.5449 0.5385 29 1 -0.4851 0.8401 -0.0004 30 1 1.2925 -3.7294 -1.7112 31 1 2.9187 -3.2832 -1.1374 32 1 2.2478 -5.6209 -0.4798 33 1 2.5941 -4.5746 0.9188 34 1 -0.1848 -5.1441 -0.2138 35 1 0.5966 -6.0957 2.4338 36 1 0.3781 -8.4116 2.6695 37 1 1.2180 -9.1231 -0.7036 38 1 1.2030 -11.3508 -1.7396 39 1 0.3230 -13.2788 -0.5408 40 1 -0.7144 -14.2389 1.5138 41 1 -1.5705 -13.8489 3.7880 42 1 -1.5101 -11.5863 4.7508 43 1 0.7418 -3.6166 2.2615 44 1 -0.9523 -3.9674 1.8405 45 1 -0.2143 -1.6625 1.1371 46 1 -0.7498 -2.6702 -0.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:30 Heat of formation + Delta-G solvation = 32.651597 kcal Electronic energy + Delta-G solvation = -28553.456613 eV Core-core repulsion = 24635.678810 eV Total energy + Delta-G solvation = -3917.777803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.19889 -41.14773 -39.27891 -37.90993 -36.25104 -35.94534 -34.12215 -33.41719 -31.80330 -31.46144 -31.21035 -29.73027 -26.93871 -25.28247 -24.66475 -24.18694 -23.82827 -22.83490 -21.76765 -21.07811 -19.92366 -19.04807 -18.87369 -18.34572 -17.62425 -17.15480 -16.79326 -16.56565 -16.05985 -15.85659 -15.49145 -15.37412 -15.30358 -15.19996 -14.82084 -14.76792 -14.32962 -14.23010 -14.04844 -13.86802 -13.28151 -13.13138 -12.92049 -12.81419 -12.74172 -12.55489 -12.37087 -12.18836 -12.02255 -11.95847 -11.86148 -11.59593 -11.38518 -11.17523 -10.77867 -10.54682 -10.48695 -10.08627 -9.73507 -8.64252 -8.58811 -7.86979 -5.43197 -0.51995 -0.13051 0.97105 1.45434 1.47742 1.49682 1.59265 1.90115 2.16931 2.49832 3.05784 3.14862 3.28597 3.29906 3.68720 3.78554 3.84523 3.88572 4.01030 4.04535 4.11368 4.31402 4.32819 4.37482 4.47273 4.57555 4.65726 4.68268 4.79844 4.86600 4.88553 4.98222 5.04338 5.07178 5.15107 5.15775 5.29189 5.32012 5.38151 5.48036 5.53414 5.58346 5.64678 5.68990 5.78774 5.91770 5.97398 6.46343 6.89336 6.92794 7.17532 7.38964 7.83298 8.38529 9.17317 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.002037 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.149558 B =13743.194302 C =14334.344253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.612 5.612 10 C 0.146 3.854 11 C -0.124 4.124 12 C 0.181 3.819 13 N -0.719 5.719 14 C 0.700 3.300 15 O -0.607 6.607 16 N -0.661 5.661 17 C 0.168 3.832 18 C -0.146 4.146 19 C -0.097 4.097 20 C -0.117 4.117 21 C -0.100 4.100 22 C -0.059 4.059 23 C -0.168 4.168 24 C 0.120 3.880 25 N -0.505 5.505 26 C 0.083 3.917 27 C -0.129 4.129 28 C 0.173 3.827 29 H 0.251 0.749 30 H 0.010 0.990 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.410 0.590 36 H 0.421 0.579 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.186 0.814 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.078 0.922 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -30.471 8.445 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.020 3.980 11 C -0.164 4.164 12 C 0.076 3.924 13 N -0.373 5.373 14 C 0.401 3.599 15 O -0.487 6.487 16 N -0.307 5.307 17 C 0.070 3.930 18 C -0.169 4.169 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.102 4.102 22 C -0.084 4.084 23 C -0.187 4.187 24 C -0.053 4.053 25 N -0.214 5.214 26 C -0.040 4.040 27 C -0.169 4.169 28 C 0.047 3.953 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.259 0.741 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.182 0.818 40 H 0.191 0.809 41 H 0.192 0.808 42 H 0.202 0.798 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -1.131 -29.398 7.685 30.407 hybrid contribution 0.198 0.783 0.218 0.837 sum -0.934 -28.614 7.903 29.700 Atomic orbital electron populations 1.70060 1.06655 1.25765 1.55434 1.26074 0.96388 1.01500 1.00123 0.85169 0.78629 0.79658 0.76775 1.19065 1.21943 1.21513 1.19504 0.91220 0.84176 1.44459 0.91585 1.44284 1.19293 1.10447 1.59516 1.20969 0.97203 0.87275 0.92588 1.22256 0.96553 0.97763 0.99870 1.20660 0.96798 0.82452 0.92510 1.45214 1.77019 1.03658 1.11368 1.16070 0.77769 0.81014 0.85072 1.90867 1.57906 1.85729 1.14210 1.42288 1.75322 1.02445 1.10624 1.17484 0.98621 0.82979 0.93921 1.21471 1.01098 0.99531 0.94794 1.21046 0.98409 0.91116 1.01005 1.21272 0.98938 1.00502 0.92894 1.18956 1.01148 0.93541 0.96580 1.21891 0.93432 0.98875 0.94249 1.22290 1.00615 0.99164 0.96669 1.23527 0.93103 0.88457 1.00181 1.67792 1.11435 1.35551 1.06618 1.18641 1.00478 0.92323 0.92509 1.22304 1.01161 0.94509 0.98943 1.20756 0.85567 0.95479 0.93482 0.93913 0.97248 0.92288 0.92123 0.91723 0.92289 0.75328 0.74078 0.85029 0.83277 0.81781 0.80862 0.80821 0.79760 0.91300 0.90826 0.90369 0.98968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 10.58 21.65 0.23 -54.54 16 2 C -0.05 -2.53 5.33 84.86 0.45 -2.08 16 3 Si 0.97 44.71 29.56 68.60 2.03 46.74 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.26 -14.52 9.56 84.03 0.80 -13.72 16 8 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.61 -31.26 3.00 -699.08 -2.10 -33.36 16 10 C 0.15 6.41 6.50 86.36 0.56 6.97 16 11 C -0.12 -4.56 5.68 30.78 0.17 -4.39 16 12 C 0.18 6.40 2.42 45.12 0.11 6.51 16 13 N -0.72 -20.59 5.08 -457.18 -2.32 -22.91 16 14 C 0.70 22.16 8.32 179.05 1.49 23.65 16 15 O -0.61 -23.68 13.18 -3.99 -0.05 -23.73 16 16 N -0.66 -17.57 5.28 -316.38 -1.67 -19.24 16 17 C 0.17 4.60 6.47 38.49 0.25 4.85 16 18 C -0.15 -3.98 8.70 22.38 0.19 -3.79 16 19 C -0.10 -1.95 9.94 22.02 0.22 -1.73 16 20 C -0.12 -1.86 9.76 22.32 0.22 -1.65 16 21 C -0.10 -1.84 5.74 -21.29 -0.12 -1.96 16 22 C -0.06 -0.65 9.89 22.51 0.22 -0.43 16 23 C -0.17 -1.55 10.03 22.14 0.22 -1.33 16 24 C 0.12 1.65 11.15 85.07 0.95 2.60 16 25 N -0.51 -10.86 9.78 -188.28 -1.84 -12.70 16 26 C 0.08 1.98 6.62 40.44 0.27 2.25 16 27 C -0.13 -4.78 5.55 30.67 0.17 -4.61 16 28 C 0.17 8.45 5.27 86.36 0.46 8.91 16 29 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 30 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 32 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 2.42 7.58 -2.38 -0.02 2.40 16 35 H 0.41 9.12 8.62 -92.71 -0.80 8.32 16 36 H 0.42 9.23 8.39 -92.71 -0.78 8.45 16 37 H 0.13 4.23 5.74 -2.91 -0.02 4.21 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.08 4.28 5.88 -2.38 -0.01 4.26 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -74.24 374.15 0.35 -73.89 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.55 Total: 25.79 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.64 Total: 20.06 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -7.71 Total: -142.75 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.24 0.35 -73.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.541 kcal (2) G-P(sol) polarization free energy of solvation -74.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds