Wall clock time and date at job start Tue Mar 31 2020 23:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99509 * 2 1 4 4 H 1.48506 * 109.47324 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47367 * 120.00066 * 3 2 1 6 6 H 1.48502 * 109.47237 * 240.00156 * 3 2 1 7 7 C 1.37877 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99973 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.47166 * 179.97438 * 13 11 10 15 15 C 1.47840 * 111.00245 * 290.84140 * 14 13 11 16 16 C 1.54900 * 104.79883 * 213.63783 * 15 14 13 17 17 C 1.55142 * 101.65559 * 37.06856 * 16 15 14 18 18 H 1.08997 * 110.85170 * 82.79832 * 17 16 15 19 19 C 1.50697 * 110.70931 * 205.96997 * 17 16 15 20 20 C 1.39272 * 119.09400 * 76.78116 * 19 17 16 21 21 C 1.36644 * 119.82403 * 179.97438 * 20 19 17 22 22 C 1.40641 * 118.11572 * 359.97438 * 21 20 19 23 23 C 1.40650 * 121.49069 * 180.02562 * 22 21 20 24 24 C 1.36649 * 118.11109 * 179.97438 * 23 22 21 25 25 C 1.39274 * 119.82526 * 0.02562 * 24 23 22 26 26 N 1.31120 * 121.82122 * 359.97438 * 25 24 23 27 27 C 1.33712 * 121.41725 * 0.02562 * 26 25 24 28 28 N 1.31117 * 119.08465 * 256.51349 * 19 17 16 29 29 C 1.47448 * 110.99848 * 169.99589 * 14 13 11 30 30 H 0.96997 * 120.00673 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47248 * 300.00221 * 9 7 2 32 32 H 1.09000 * 109.46942 * 59.99945 * 9 7 2 33 33 H 0.96998 * 120.00184 * 0.02562 * 10 9 7 34 34 H 1.09001 * 109.47093 * 299.99833 * 13 11 10 35 35 H 1.09000 * 109.47455 * 59.99776 * 13 11 10 36 36 H 1.08996 * 110.37263 * 332.46795 * 15 14 13 37 37 H 1.09002 * 110.37227 * 94.80608 * 15 14 13 38 38 H 1.09007 * 110.99171 * 278.98153 * 16 15 14 39 39 H 1.08998 * 111.02695 * 155.17802 * 16 15 14 40 40 H 1.08006 * 120.08676 * 359.97438 * 20 19 17 41 41 H 1.08009 * 120.94330 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.94267 * 359.95472 * 23 22 21 43 43 H 1.08005 * 120.08837 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.09085 * 179.97438 * 25 24 23 45 45 H 1.08991 * 109.88781 * 242.66382 * 29 14 13 46 46 H 1.08996 * 109.88691 * 3.69686 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7541 -4.8833 -0.0025 12 8 0.5617 -5.1050 -0.0017 13 6 2.7335 -6.0286 -0.0032 14 7 1.9991 -7.3009 -0.0033 15 6 1.3093 -7.5147 1.2867 16 6 1.3519 -9.0471 1.5090 17 6 2.7525 -9.4065 0.9467 18 1 3.5272 -9.2296 1.6927 19 6 2.7862 -10.8374 0.4751 20 6 2.1911 -11.1638 -0.7411 21 6 2.2134 -12.4565 -1.1833 22 6 2.8473 -13.4211 -0.3796 23 6 2.9123 -14.7718 -0.7663 24 6 3.5455 -15.6504 0.0671 25 6 4.1017 -15.1952 1.2600 26 7 4.0384 -13.9348 1.6159 27 6 3.4336 -13.0231 0.8471 28 7 3.3797 -11.7397 1.2185 29 6 2.9089 -8.4361 -0.2431 30 1 -0.4851 0.8400 0.0004 31 1 0.6249 -2.5571 0.8897 32 1 0.6242 -2.5567 -0.8903 33 1 3.1570 -3.4353 -0.0021 34 1 3.3601 -5.9703 -0.8932 35 1 3.3602 -5.9714 0.8868 36 1 1.8376 -7.0000 2.0893 37 1 0.2775 -7.1684 1.2273 38 1 0.5645 -9.5457 0.9436 39 1 1.2826 -9.2906 2.5692 40 1 1.7132 -10.3972 -1.3330 41 1 1.7579 -12.7298 -2.1237 42 1 2.4739 -15.1052 -1.6953 43 1 3.6136 -16.6951 -0.1982 44 1 4.5991 -15.8999 1.9100 45 1 2.6369 -8.9398 -1.1706 46 1 3.9376 -8.0808 -0.3021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878906703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:38 Heat of formation + Delta-G solvation = 43.515610 kcal Electronic energy + Delta-G solvation = -27619.964730 eV Core-core repulsion = 23702.658026 eV Total energy + Delta-G solvation = -3917.306704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63165 -39.80979 -38.61465 -37.47815 -34.48014 -34.13552 -33.01476 -32.28935 -31.53605 -30.74032 -28.86302 -27.93992 -26.07789 -24.82876 -24.32083 -22.82759 -22.51444 -21.29384 -21.04436 -19.62520 -18.84498 -17.75687 -17.54156 -17.15802 -16.01184 -15.99532 -15.38104 -15.35603 -15.30640 -14.97465 -14.83825 -14.58864 -14.20934 -13.95255 -13.63450 -13.57660 -13.31600 -12.97000 -12.91704 -12.56793 -12.24557 -12.17644 -11.91822 -11.86222 -11.57249 -11.41488 -11.35018 -11.20214 -10.99616 -10.90630 -10.81221 -10.69211 -10.30133 -9.39693 -9.37088 -9.28658 -9.18955 -8.98566 -8.71396 -8.24584 -7.83358 -6.15352 -4.22352 -0.17344 0.21368 1.53606 2.37746 3.24438 3.25909 3.30797 3.32159 3.42779 3.69080 3.70791 4.00871 4.10800 4.21685 4.24936 4.30821 4.36488 4.40640 4.57574 4.59044 4.64330 4.84803 4.88881 5.15004 5.19952 5.20502 5.21489 5.31565 5.38824 5.40842 5.44374 5.45389 5.53219 5.62724 5.74157 5.77105 5.81147 5.85063 6.04181 6.20946 6.25550 6.92448 6.94175 7.07302 7.34258 7.47930 7.54357 7.69299 7.82281 7.98909 8.66392 8.80932 9.15884 9.44529 10.94732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.001611 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.490997 B =17372.102778 C =17484.780226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.028 3.972 14 N -0.506 5.506 15 C 0.049 3.951 16 C -0.115 4.115 17 C -0.069 4.069 18 H 0.101 0.899 19 C 0.209 3.791 20 C -0.170 4.170 21 C -0.043 4.043 22 C -0.162 4.162 23 C -0.041 4.041 24 C -0.186 4.186 25 C 0.156 3.844 26 N -0.467 5.467 27 C 0.310 3.690 28 N -0.467 5.467 29 C 0.046 3.954 30 H 0.266 0.734 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.389 0.611 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.166 0.834 45 H 0.086 0.914 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 -31.538 -1.949 32.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.366 5.366 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.103 4.103 14 N -0.230 5.230 15 C -0.078 4.078 16 C -0.154 4.154 17 C -0.089 4.089 18 H 0.119 0.881 19 C 0.052 3.948 20 C -0.189 4.189 21 C -0.069 4.069 22 C -0.167 4.167 23 C -0.067 4.067 24 C -0.206 4.206 25 C -0.020 4.020 26 N -0.176 5.176 27 C 0.072 3.928 28 N -0.176 5.176 29 C -0.083 4.083 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.221 0.779 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.183 0.817 45 H 0.104 0.896 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.444 -30.974 -0.739 31.864 hybrid contribution 0.852 0.408 -0.961 1.347 sum 8.296 -30.566 -1.700 31.717 Atomic orbital electron populations 1.69961 1.06096 1.27389 1.48821 1.24947 0.94905 0.99413 0.94711 0.86481 0.79416 0.82365 0.78665 1.21074 1.20098 1.20086 1.21201 0.93226 0.90534 1.53307 0.91983 1.19066 0.88269 0.81883 0.97664 1.46447 1.11026 1.06118 1.72968 1.20262 0.89556 0.84019 0.77926 1.90646 1.16591 1.84634 1.49741 1.22300 0.95492 0.89900 1.02621 1.63341 1.26309 1.00071 1.33264 1.23118 1.01675 0.93942 0.89069 1.22803 0.94691 0.96374 1.01538 1.21480 1.00212 0.88197 0.99002 0.88084 1.21296 0.89198 0.94813 0.89484 1.21966 1.01510 0.97699 0.97750 1.21489 0.94573 0.92216 0.98647 1.19644 1.03191 0.95866 0.98026 1.21489 0.94799 0.91360 0.99090 1.21974 1.00730 1.01555 0.96295 1.23088 0.93354 0.91535 0.93980 1.67610 1.15851 1.01768 1.32341 1.19303 0.93909 0.90998 0.88624 1.67407 1.17249 0.99837 1.33089 1.23087 0.96297 0.91230 0.97661 0.92408 0.95648 0.95565 0.77880 0.88339 0.92153 0.93440 0.88281 0.90277 0.90184 0.82943 0.83767 0.84049 0.83995 0.81706 0.89568 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 10 N -0.72 -14.85 5.55 -61.47 -0.34 -15.19 16 11 C 0.50 9.72 7.63 -10.99 -0.08 9.64 16 12 O -0.54 -12.68 15.04 5.55 0.08 -12.60 16 13 C 0.03 0.39 5.05 -4.98 -0.03 0.37 16 14 N -0.51 -6.75 4.86 -232.70 -1.13 -7.88 16 15 C 0.05 0.65 5.74 -2.30 -0.01 0.63 16 16 C -0.12 -1.21 6.50 -24.60 -0.16 -1.37 16 17 C -0.07 -0.69 3.29 -89.95 -0.30 -0.99 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.21 2.22 5.86 -82.51 -0.48 1.73 16 20 C -0.17 -1.44 8.73 -39.77 -0.35 -1.79 16 21 C -0.04 -0.32 9.90 -39.25 -0.39 -0.71 16 22 C -0.16 -1.47 5.74 -106.77 -0.61 -2.08 16 23 C -0.04 -0.25 9.90 -39.25 -0.39 -0.63 16 24 C -0.19 -0.98 10.03 -39.77 -0.40 -1.37 16 25 C 0.16 1.14 11.14 -17.47 -0.19 0.94 16 26 N -0.47 -5.46 10.43 -12.62 -0.13 -5.59 16 27 C 0.31 3.76 7.62 -157.81 -1.20 2.56 16 28 N -0.47 -6.07 10.32 -8.85 -0.09 -6.16 16 29 C 0.05 0.46 6.31 -2.83 -0.02 0.44 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 34 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 35 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 36 H 0.05 0.62 7.62 -51.93 -0.40 0.23 16 37 H 0.10 1.55 7.38 -51.93 -0.38 1.17 16 38 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.15 1.08 6.38 -52.48 -0.33 0.74 16 41 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 44 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.09 0.78 5.52 -51.93 -0.29 0.50 16 46 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -36.00 381.24 -11.49 -47.49 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.28 Total: 3.12 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -5.06 Total: 0.61 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.96 Total: -60.17 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.00 -11.49 -47.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878906703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.008 kcal (2) G-P(sol) polarization free energy of solvation -35.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds