Wall clock time and date at job start Tue Mar 31 2020 23:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99509 * 2 1 4 4 H 1.48506 * 109.47324 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47367 * 120.00066 * 3 2 1 6 6 H 1.48502 * 109.47237 * 240.00156 * 3 2 1 7 7 C 1.37877 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99800 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99973 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99999 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.47166 * 179.97438 * 13 11 10 15 15 C 1.47840 * 111.00245 * 290.84140 * 14 13 11 16 16 C 1.54900 * 104.79883 * 213.63783 * 15 14 13 17 17 C 1.55142 * 101.65559 * 37.06856 * 16 15 14 18 18 H 1.08997 * 110.85170 * 82.79832 * 17 16 15 19 19 C 1.50697 * 110.70931 * 205.96997 * 17 16 15 20 20 C 1.39272 * 119.09400 * 76.78116 * 19 17 16 21 21 C 1.36644 * 119.82403 * 179.97438 * 20 19 17 22 22 C 1.40641 * 118.11572 * 359.97438 * 21 20 19 23 23 C 1.40650 * 121.49069 * 180.02562 * 22 21 20 24 24 C 1.36649 * 118.11109 * 179.97438 * 23 22 21 25 25 C 1.39274 * 119.82526 * 0.02562 * 24 23 22 26 26 N 1.31120 * 121.82122 * 359.97438 * 25 24 23 27 27 C 1.33712 * 121.41725 * 0.02562 * 26 25 24 28 28 N 1.31117 * 119.08465 * 256.51349 * 19 17 16 29 29 C 1.47448 * 110.99848 * 169.99589 * 14 13 11 30 30 H 0.96997 * 120.00673 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47248 * 300.00221 * 9 7 2 32 32 H 1.09000 * 109.46942 * 59.99945 * 9 7 2 33 33 H 0.96998 * 120.00184 * 0.02562 * 10 9 7 34 34 H 1.09001 * 109.47093 * 299.99833 * 13 11 10 35 35 H 1.09000 * 109.47455 * 59.99776 * 13 11 10 36 36 H 1.08996 * 110.37263 * 332.46795 * 15 14 13 37 37 H 1.09002 * 110.37227 * 94.80608 * 15 14 13 38 38 H 1.09007 * 110.99171 * 278.98153 * 16 15 14 39 39 H 1.08998 * 111.02695 * 155.17802 * 16 15 14 40 40 H 1.08006 * 120.08676 * 359.97438 * 20 19 17 41 41 H 1.08009 * 120.94330 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.94267 * 359.95472 * 23 22 21 43 43 H 1.08005 * 120.08837 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.09085 * 179.97438 * 25 24 23 45 45 H 1.08991 * 109.88781 * 242.66382 * 29 14 13 46 46 H 1.08996 * 109.88691 * 3.69686 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1027 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 1.7541 -4.8833 -0.0025 12 8 0.5617 -5.1050 -0.0017 13 6 2.7335 -6.0286 -0.0032 14 7 1.9991 -7.3009 -0.0033 15 6 1.3093 -7.5147 1.2867 16 6 1.3519 -9.0471 1.5090 17 6 2.7525 -9.4065 0.9467 18 1 3.5272 -9.2296 1.6927 19 6 2.7862 -10.8374 0.4751 20 6 2.1911 -11.1638 -0.7411 21 6 2.2134 -12.4565 -1.1833 22 6 2.8473 -13.4211 -0.3796 23 6 2.9123 -14.7718 -0.7663 24 6 3.5455 -15.6504 0.0671 25 6 4.1017 -15.1952 1.2600 26 7 4.0384 -13.9348 1.6159 27 6 3.4336 -13.0231 0.8471 28 7 3.3797 -11.7397 1.2185 29 6 2.9089 -8.4361 -0.2431 30 1 -0.4851 0.8400 0.0004 31 1 0.6249 -2.5571 0.8897 32 1 0.6242 -2.5567 -0.8903 33 1 3.1570 -3.4353 -0.0021 34 1 3.3601 -5.9703 -0.8932 35 1 3.3602 -5.9714 0.8868 36 1 1.8376 -7.0000 2.0893 37 1 0.2775 -7.1684 1.2273 38 1 0.5645 -9.5457 0.9436 39 1 1.2826 -9.2906 2.5692 40 1 1.7132 -10.3972 -1.3330 41 1 1.7579 -12.7298 -2.1237 42 1 2.4739 -15.1052 -1.6953 43 1 3.6136 -16.6951 -0.1982 44 1 4.5991 -15.8999 1.9100 45 1 2.6369 -8.9398 -1.1706 46 1 3.9376 -8.0808 -0.3021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878906703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:37 Heat of formation + Delta-G solvation = 16.715490 kcal Electronic energy + Delta-G solvation = -27621.126870 eV Core-core repulsion = 23702.658026 eV Total energy + Delta-G solvation = -3918.468844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.25202 -40.92050 -39.81010 -38.39723 -36.06623 -35.06362 -34.33228 -33.89224 -32.11449 -31.58171 -29.83693 -29.52195 -27.48336 -25.40763 -25.15168 -24.35939 -23.41818 -22.27503 -21.93302 -21.25492 -19.50061 -18.95032 -18.35633 -18.08905 -17.52310 -17.27979 -16.64186 -16.48073 -16.30552 -16.01777 -15.89401 -15.57312 -15.17108 -14.97099 -14.88120 -14.46177 -14.14278 -14.01598 -13.93176 -13.89689 -13.62214 -13.40730 -13.15601 -12.90955 -12.80462 -12.67916 -12.48864 -12.27244 -12.22231 -12.17500 -12.00973 -11.78559 -11.49167 -11.37900 -10.77393 -10.63403 -9.99712 -9.89071 -9.77557 -9.77142 -9.27494 -8.27507 -6.44195 -0.70384 -0.38206 0.97264 1.43827 1.47837 1.55974 1.81706 1.85526 2.28870 2.47110 2.67504 3.05030 3.07141 3.11303 3.41190 3.48934 3.66229 3.70468 3.74248 3.88939 3.95970 3.98893 4.07066 4.25066 4.30585 4.34050 4.38363 4.45366 4.47332 4.54865 4.67884 4.77362 4.85926 4.89431 4.96097 5.01544 5.11251 5.14297 5.20496 5.21741 5.27401 5.36070 5.51562 5.70550 5.72037 5.87113 5.91018 6.00116 6.44878 6.67190 6.99600 7.20491 7.25581 7.58066 8.84328 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.001611 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.490997 B =17372.102778 C =17484.780226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.286 1.286 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.494 3.506 12 O -0.585 6.585 13 C 0.042 3.958 14 N -0.524 5.524 15 C 0.051 3.949 16 C -0.105 4.105 17 C -0.059 4.059 18 H 0.094 0.906 19 C 0.197 3.803 20 C -0.181 4.181 21 C -0.031 4.031 22 C -0.177 4.177 23 C -0.039 4.039 24 C -0.177 4.177 25 C 0.153 3.847 26 N -0.520 5.520 27 C 0.275 3.725 28 N -0.510 5.510 29 C 0.051 3.949 30 H 0.268 0.732 31 H -0.015 1.015 32 H -0.014 1.014 33 H 0.407 0.593 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.166 0.834 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.193 0.807 45 H 0.101 0.899 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -33.564 -3.657 35.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.465 6.465 13 C -0.089 4.089 14 N -0.248 5.248 15 C -0.077 4.077 16 C -0.144 4.144 17 C -0.080 4.080 18 H 0.112 0.888 19 C 0.042 3.958 20 C -0.200 4.200 21 C -0.057 4.057 22 C -0.182 4.182 23 C -0.065 4.065 24 C -0.197 4.197 25 C -0.022 4.022 26 N -0.231 5.231 27 C 0.038 3.962 28 N -0.220 5.220 29 C -0.076 4.076 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.243 0.757 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.200 0.800 42 H 0.197 0.803 43 H 0.200 0.800 44 H 0.210 0.790 45 H 0.119 0.881 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.777 -33.037 -2.451 34.541 hybrid contribution 0.111 0.826 -0.418 0.932 sum 9.888 -32.211 -2.869 33.817 Atomic orbital electron populations 1.70132 1.08266 1.28569 1.49955 1.26061 0.95759 1.03881 0.93875 0.85215 0.77905 0.76664 0.79466 1.21142 1.18742 1.18632 1.21614 0.94329 0.90675 1.52921 0.89810 1.18482 0.88680 0.84344 0.93912 1.46185 1.11097 1.05552 1.73414 1.21350 0.90028 0.84693 0.75842 1.90630 1.19189 1.85293 1.51367 1.22238 0.93873 0.87541 1.05274 1.63263 1.27551 1.00814 1.33214 1.22971 0.99842 0.95613 0.89264 1.22686 0.95462 0.94396 1.01821 1.21337 0.99231 0.88575 0.98808 0.88815 1.21332 0.89770 0.94359 0.90342 1.22084 1.01898 0.98816 0.97241 1.21932 0.93057 0.91327 0.99382 1.19920 1.03215 0.97820 0.97250 1.21979 0.94174 0.89942 1.00422 1.22411 0.98963 1.03402 0.94905 1.23739 0.92577 0.90642 0.95219 1.67568 1.17973 1.03500 1.34040 1.19596 0.95409 0.90902 0.90302 1.67281 1.18970 1.01047 1.34727 1.23117 0.96499 0.89933 0.98049 0.92301 0.99697 0.99594 0.75709 0.85180 0.89587 0.93720 0.91612 0.90062 0.89992 0.81640 0.79991 0.80260 0.79970 0.79037 0.88136 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.98 42.41 29.54 68.60 2.03 44.44 16 4 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.86 5.43 85.63 0.46 15.32 16 10 N -0.71 -29.88 5.55 -466.79 -2.59 -32.47 16 11 C 0.49 19.56 7.63 87.66 0.67 20.23 16 12 O -0.58 -28.90 15.04 -3.04 -0.05 -28.94 16 13 C 0.04 1.09 5.05 85.56 0.43 1.52 16 14 N -0.52 -13.61 4.86 -890.12 -4.33 -17.94 16 15 C 0.05 1.38 5.74 86.77 0.50 1.88 16 16 C -0.10 -2.26 6.50 31.98 0.21 -2.06 16 17 C -0.06 -1.19 3.29 -10.36 -0.03 -1.22 16 18 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 19 C 0.20 4.18 5.86 42.91 0.25 4.43 16 20 C -0.18 -2.83 8.73 22.15 0.19 -2.63 16 21 C -0.03 -0.39 9.90 22.48 0.22 -0.16 16 22 C -0.18 -2.91 5.74 -21.26 -0.12 -3.03 16 23 C -0.04 -0.34 9.90 22.49 0.22 -0.12 16 24 C -0.18 -1.27 10.03 22.15 0.22 -1.05 16 25 C 0.15 2.00 11.14 85.05 0.95 2.94 16 26 N -0.52 -12.32 10.43 -193.84 -2.02 -14.34 16 27 C 0.28 6.74 7.62 135.01 1.03 7.77 16 28 N -0.51 -13.71 10.32 -181.90 -1.88 -15.58 16 29 C 0.05 0.95 6.31 86.65 0.55 1.50 16 30 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 31 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 34 H 0.13 2.64 8.03 -2.39 -0.02 2.62 16 35 H 0.09 1.87 7.85 -2.39 -0.02 1.85 16 36 H 0.04 1.21 7.62 -2.39 -0.02 1.19 16 37 H 0.07 2.22 7.38 -2.39 -0.02 2.20 16 38 H 0.08 1.71 7.94 -2.38 -0.02 1.69 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.17 2.02 6.38 -2.91 -0.02 2.00 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 43 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 44 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 45 H 0.10 1.61 5.52 -2.39 -0.01 1.59 16 46 H 0.08 1.23 7.55 -2.39 -0.02 1.21 16 Total: -1.00 -85.37 381.24 -1.86 -87.23 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.24 Total: 18.02 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.45 Total: 15.80 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -10.53 Total: -136.54 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.94 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -85.37 -1.86 -87.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878906703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.942 kcal (2) G-P(sol) polarization free energy of solvation -85.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds