Wall clock time and date at job start Tue Mar 31 2020 23:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00114 * 2 1 4 4 C 1.35438 * 125.87434 * 174.86520 * 3 2 1 5 5 C 1.41381 * 106.78080 * 180.02562 * 4 3 2 6 6 C 1.34464 * 106.93922 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.71087 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46994 * 95.16965 * 7 6 5 9 9 C 1.46901 * 111.00013 * 160.99054 * 8 7 6 10 10 C 1.50695 * 109.47493 * 288.46588 * 9 8 7 11 11 H 1.08001 * 119.99701 * 3.27516 * 10 9 8 12 12 C 1.37875 * 120.00091 * 183.27606 * 10 9 8 13 13 N 1.31512 * 120.00212 * 5.27042 * 12 10 9 14 14 Si 1.86803 * 120.00022 * 185.27509 * 12 10 9 15 15 H 1.48500 * 109.47502 * 64.99505 * 14 12 10 16 16 H 1.48500 * 109.47173 * 184.99929 * 14 12 10 17 17 H 1.48507 * 109.46785 * 304.99471 * 14 12 10 18 18 C 1.46896 * 110.99974 * 284.94515 * 8 7 6 19 19 C 1.53005 * 109.47204 * 169.99841 * 18 8 7 20 20 N 1.46896 * 109.47204 * 179.97438 * 19 18 8 21 21 C 1.47006 * 111.00204 * 293.63700 * 20 19 18 22 22 C 1.53100 * 109.25879 * 177.60466 * 21 20 19 23 23 O 1.43021 * 109.25674 * 56.85286 * 22 21 20 24 24 C 1.43013 * 113.73462 * 301.32765 * 23 22 21 25 25 C 1.47011 * 111.00067 * 170.00132 * 20 19 18 26 26 O 1.34414 * 125.86856 * 355.21258 * 3 2 1 27 27 H 1.09002 * 109.47160 * 184.90773 * 1 2 3 28 28 H 1.09007 * 109.46890 * 304.90703 * 1 2 3 29 29 H 1.08997 * 109.47496 * 64.90676 * 1 2 3 30 30 H 1.08002 * 126.60895 * 0.02562 * 4 3 2 31 31 H 1.08001 * 126.52803 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47753 * 335.17113 * 7 6 5 33 33 H 1.09001 * 109.47166 * 215.16960 * 7 6 5 34 34 H 1.09001 * 109.47168 * 48.46751 * 9 8 7 35 35 H 1.09002 * 109.46914 * 168.46250 * 9 8 7 36 36 H 0.97004 * 120.00260 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47157 * 50.00169 * 18 8 7 38 38 H 1.09001 * 109.47105 * 290.00075 * 18 8 7 39 39 H 1.09003 * 109.46796 * 60.00107 * 19 18 8 40 40 H 1.09006 * 109.47081 * 300.00575 * 19 18 8 41 41 H 1.09002 * 109.50773 * 297.54228 * 21 20 19 42 42 H 1.09003 * 109.50744 * 57.67634 * 21 20 19 43 43 H 1.08992 * 109.51174 * 296.91439 * 22 21 20 44 44 H 1.09003 * 109.54091 * 176.80367 * 22 21 20 45 45 H 1.08996 * 109.51051 * 298.73691 * 24 23 22 46 46 H 1.09005 * 109.54412 * 178.62783 * 24 23 22 47 47 H 1.09002 * 109.50581 * 302.33178 * 25 20 19 48 48 H 1.09005 * 109.50817 * 62.41186 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4540 2.2442 0.0982 5 6 3.3057 3.6496 0.0574 6 6 1.9903 3.9015 -0.0631 7 6 1.3602 5.2679 -0.1449 8 7 1.1634 5.6328 -1.5542 9 6 0.1735 6.7102 -1.6857 10 6 -1.2004 6.1697 -1.3836 11 1 -1.3197 5.1436 -1.0688 12 6 -2.3049 6.9853 -1.5090 13 7 -2.1728 8.2018 -1.9908 14 14 -3.9892 6.3624 -0.9944 15 1 -4.0019 6.1226 0.4710 16 1 -5.0184 7.3758 -1.3392 17 1 -4.2862 5.0933 -1.7063 18 6 2.4366 6.0080 -2.1835 19 6 2.2394 6.1384 -3.6952 20 7 3.5124 6.5142 -4.3245 21 6 3.9245 7.8645 -3.9144 22 6 5.2813 8.1914 -4.5440 23 8 5.1850 8.0629 -5.9652 24 6 4.7864 6.7600 -6.3997 25 6 3.4247 6.4186 -5.7889 26 8 1.3299 2.7284 -0.0909 27 1 -0.3633 -1.0239 0.0879 28 1 -0.3633 0.5881 0.8428 29 1 -0.3634 0.4358 -0.9306 30 1 4.3804 1.6967 0.1900 31 1 4.0980 4.3815 0.1118 32 1 2.0137 5.9986 0.3317 33 1 0.3969 5.2550 0.3650 34 1 0.4116 7.5100 -0.9845 35 1 0.1947 7.1008 -2.7032 36 1 -2.9499 8.7758 -2.0787 37 1 3.1830 5.2402 -1.9794 38 1 2.7755 6.9612 -1.7777 39 1 1.4930 6.9062 -3.8993 40 1 1.9004 5.1852 -4.1010 41 1 3.1831 8.5892 -4.2508 42 1 4.0080 7.9054 -2.8284 43 1 6.0341 7.4996 -4.1662 44 1 5.5648 9.2126 -4.2893 45 1 5.5247 6.0265 -6.0758 46 1 4.7115 6.7453 -7.4871 47 1 3.1432 5.4041 -6.0711 48 1 2.6747 7.1196 -6.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893863295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:48 Heat of formation + Delta-G solvation = -11.430420 kcal Electronic energy + Delta-G solvation = -27949.254537 eV Core-core repulsion = 24132.716395 eV Total energy + Delta-G solvation = -3816.538142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18158 -39.52143 -37.30500 -35.37102 -32.91675 -32.54738 -31.23023 -30.67345 -29.29779 -28.98643 -27.10066 -26.12229 -24.15220 -23.92450 -22.36227 -21.64128 -20.69735 -20.20824 -19.66846 -17.99773 -16.75977 -16.42879 -16.13401 -15.95300 -15.57512 -15.13478 -15.03314 -14.80796 -14.67307 -14.56818 -14.07422 -13.67263 -13.62003 -13.54708 -13.50553 -13.00471 -12.73945 -12.58126 -12.31107 -12.17549 -12.10249 -11.73955 -11.53595 -11.37498 -10.98140 -10.97238 -10.87276 -10.76164 -10.71876 -10.61520 -10.28545 -9.92253 -9.83208 -9.66317 -9.40812 -9.12056 -8.50461 -8.21080 -7.46382 -7.20986 -6.11352 -4.12254 1.31422 1.82699 1.97662 2.80618 3.27718 3.32517 3.35192 3.74486 3.75475 3.92015 4.36661 4.85034 4.93464 4.99848 5.05297 5.06854 5.07651 5.16227 5.21468 5.24390 5.27126 5.31803 5.49118 5.55917 5.58211 5.65069 5.66504 5.75213 5.83292 5.87179 5.87643 5.98500 6.04636 6.06141 6.07361 6.27897 6.36634 6.39334 6.73975 7.00540 7.05094 7.13266 7.16657 7.18045 7.33728 7.71922 7.93933 8.04242 8.40922 8.94632 9.52028 10.99199 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006228 B = 0.004271 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4494.575593 B = 6553.544538 C =10063.316200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.044 6.044 3 C -0.044 4.044 4 C -0.173 4.173 5 C -0.212 4.212 6 C 0.038 3.962 7 C 0.134 3.866 8 N -0.531 5.531 9 C 0.191 3.809 10 C -0.511 4.511 11 H 0.063 0.937 12 C 0.059 3.941 13 N -0.897 5.897 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.060 3.940 19 C 0.061 3.939 20 N -0.537 5.537 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.066 3.934 25 C 0.018 3.982 26 O -0.160 6.160 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.102 0.898 34 H -0.010 1.010 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -8.503 -0.420 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.192 5.808 3 C -0.204 4.204 4 C -0.200 4.200 5 C -0.233 4.233 6 C -0.017 4.017 7 C 0.006 3.994 8 N -0.257 5.257 9 C 0.067 3.933 10 C -0.549 4.549 11 H 0.081 0.919 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.068 4.068 19 C -0.067 4.067 20 N -0.263 5.263 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.011 4.011 25 C -0.110 4.110 26 O -0.057 6.057 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.007 0.993 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.162 -9.955 -0.715 16.518 hybrid contribution -2.064 1.862 0.557 2.836 sum 11.098 -8.093 -0.158 13.736 Atomic orbital electron populations 1.23587 0.94114 1.06797 1.07102 1.85373 1.07150 0.94276 1.93958 1.23988 0.91271 0.92295 1.12886 1.21407 0.96228 0.94019 1.08369 1.21454 0.95915 0.95398 1.10501 1.22842 0.90873 0.86427 1.01607 1.20469 1.01258 0.85774 0.91930 1.61928 1.08081 1.43531 1.12130 1.19842 0.89261 0.86849 0.97331 1.21105 0.90594 0.97843 1.45368 0.91883 1.24958 0.99197 0.94967 0.95193 1.69940 1.30633 1.07987 1.45051 0.86590 0.83431 0.78510 0.79107 1.20288 1.21309 1.20107 1.22014 0.92636 0.98620 0.93576 1.22125 0.88422 1.01452 0.94666 1.62168 1.32151 1.25057 1.06881 1.22834 0.97208 0.90005 1.01448 1.22663 0.96029 1.01734 0.80727 1.87957 1.89041 1.31704 1.22055 1.22647 0.94677 0.84818 0.99006 1.22747 0.97698 1.02194 0.88401 1.84269 1.36227 1.13745 1.71418 0.87441 0.89284 0.89100 0.83557 0.83544 0.92335 0.87934 0.99250 0.94096 0.92792 0.90949 0.95854 0.93434 0.90122 0.93771 0.89425 0.92441 0.88702 0.92419 0.88715 0.89652 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.47 101.05 1.06 -0.53 16 2 S -0.04 -0.55 22.75 -107.50 -2.45 -3.00 16 3 C -0.04 -0.69 7.35 29.73 0.22 -0.47 16 4 C -0.17 -2.54 10.88 -39.39 -0.43 -2.97 16 5 C -0.21 -3.22 9.74 -39.72 -0.39 -3.61 16 6 C 0.04 0.66 6.37 -35.64 -0.23 0.43 16 7 C 0.13 2.48 5.35 -4.98 -0.03 2.46 16 8 N -0.53 -10.89 4.38 -237.51 -1.04 -11.93 16 9 C 0.19 4.69 4.60 -4.98 -0.02 4.67 16 10 C -0.51 -13.78 8.39 -34.44 -0.29 -14.07 16 11 H 0.06 1.71 7.56 -52.49 -0.40 1.32 16 12 C 0.06 1.61 5.45 -17.82 -0.10 1.51 16 13 N -0.90 -25.81 13.29 55.43 0.74 -25.07 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 C 0.06 1.05 4.72 -3.82 -0.02 1.03 16 19 C 0.06 1.04 4.92 -3.82 -0.02 1.02 16 20 N -0.54 -7.84 4.73 -234.31 -1.11 -8.95 16 21 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 22 C 0.07 0.77 7.01 37.21 0.26 1.03 16 23 O -0.39 -5.14 10.83 -35.23 -0.38 -5.52 16 24 C 0.07 0.74 7.01 37.21 0.26 1.01 16 25 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 26 O -0.16 -2.91 10.35 4.45 0.05 -2.86 16 27 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.15 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 33 H 0.10 2.08 6.95 -51.93 -0.36 1.72 16 34 H -0.01 -0.27 8.06 -51.93 -0.42 -0.68 16 35 H 0.04 1.08 5.95 -51.93 -0.31 0.77 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.22 6.56 -51.93 -0.34 0.88 16 38 H 0.02 0.40 6.49 -51.93 -0.34 0.06 16 39 H 0.05 0.93 6.26 -51.93 -0.33 0.61 16 40 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -30.08 396.60 -10.85 -40.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.86 Total: 2.38 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.24 Total: -8.11 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.41 Total: -45.96 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.34 Total: -8.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.45 Total: -3.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.08 -10.85 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893863295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds