Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00114 * 2 1 4 4 C 1.35438 * 125.87434 * 174.86520 * 3 2 1 5 5 C 1.41381 * 106.78080 * 180.02562 * 4 3 2 6 6 C 1.34464 * 106.93922 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.71087 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46994 * 95.16965 * 7 6 5 9 9 C 1.46901 * 111.00013 * 160.99054 * 8 7 6 10 10 C 1.50695 * 109.47493 * 288.46588 * 9 8 7 11 11 H 1.08001 * 119.99701 * 3.27516 * 10 9 8 12 12 C 1.37875 * 120.00091 * 183.27606 * 10 9 8 13 13 N 1.31512 * 120.00212 * 5.27042 * 12 10 9 14 14 Si 1.86803 * 120.00022 * 185.27509 * 12 10 9 15 15 H 1.48500 * 109.47502 * 64.99505 * 14 12 10 16 16 H 1.48500 * 109.47173 * 184.99929 * 14 12 10 17 17 H 1.48507 * 109.46785 * 304.99471 * 14 12 10 18 18 C 1.46896 * 110.99974 * 284.94515 * 8 7 6 19 19 C 1.53005 * 109.47204 * 169.99841 * 18 8 7 20 20 N 1.46896 * 109.47204 * 179.97438 * 19 18 8 21 21 C 1.47006 * 111.00204 * 293.63700 * 20 19 18 22 22 C 1.53100 * 109.25879 * 177.60466 * 21 20 19 23 23 O 1.43021 * 109.25674 * 56.85286 * 22 21 20 24 24 C 1.43013 * 113.73462 * 301.32765 * 23 22 21 25 25 C 1.47011 * 111.00067 * 170.00132 * 20 19 18 26 26 O 1.34414 * 125.86856 * 355.21258 * 3 2 1 27 27 H 1.09002 * 109.47160 * 184.90773 * 1 2 3 28 28 H 1.09007 * 109.46890 * 304.90703 * 1 2 3 29 29 H 1.08997 * 109.47496 * 64.90676 * 1 2 3 30 30 H 1.08002 * 126.60895 * 0.02562 * 4 3 2 31 31 H 1.08001 * 126.52803 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47753 * 335.17113 * 7 6 5 33 33 H 1.09001 * 109.47166 * 215.16960 * 7 6 5 34 34 H 1.09001 * 109.47168 * 48.46751 * 9 8 7 35 35 H 1.09002 * 109.46914 * 168.46250 * 9 8 7 36 36 H 0.97004 * 120.00260 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47157 * 50.00169 * 18 8 7 38 38 H 1.09001 * 109.47105 * 290.00075 * 18 8 7 39 39 H 1.09003 * 109.46796 * 60.00107 * 19 18 8 40 40 H 1.09006 * 109.47081 * 300.00575 * 19 18 8 41 41 H 1.09002 * 109.50773 * 297.54228 * 21 20 19 42 42 H 1.09003 * 109.50744 * 57.67634 * 21 20 19 43 43 H 1.08992 * 109.51174 * 296.91439 * 22 21 20 44 44 H 1.09003 * 109.54091 * 176.80367 * 22 21 20 45 45 H 1.08996 * 109.51051 * 298.73691 * 24 23 22 46 46 H 1.09005 * 109.54412 * 178.62783 * 24 23 22 47 47 H 1.09002 * 109.50581 * 302.33178 * 25 20 19 48 48 H 1.09005 * 109.50817 * 62.41186 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4540 2.2442 0.0982 5 6 3.3057 3.6496 0.0574 6 6 1.9903 3.9015 -0.0631 7 6 1.3602 5.2679 -0.1449 8 7 1.1634 5.6328 -1.5542 9 6 0.1735 6.7102 -1.6857 10 6 -1.2004 6.1697 -1.3836 11 1 -1.3197 5.1436 -1.0688 12 6 -2.3049 6.9853 -1.5090 13 7 -2.1728 8.2018 -1.9908 14 14 -3.9892 6.3624 -0.9944 15 1 -4.0019 6.1226 0.4710 16 1 -5.0184 7.3758 -1.3392 17 1 -4.2862 5.0933 -1.7063 18 6 2.4366 6.0080 -2.1835 19 6 2.2394 6.1384 -3.6952 20 7 3.5124 6.5142 -4.3245 21 6 3.9245 7.8645 -3.9144 22 6 5.2813 8.1914 -4.5440 23 8 5.1850 8.0629 -5.9652 24 6 4.7864 6.7600 -6.3997 25 6 3.4247 6.4186 -5.7889 26 8 1.3299 2.7284 -0.0909 27 1 -0.3633 -1.0239 0.0879 28 1 -0.3633 0.5881 0.8428 29 1 -0.3634 0.4358 -0.9306 30 1 4.3804 1.6967 0.1900 31 1 4.0980 4.3815 0.1118 32 1 2.0137 5.9986 0.3317 33 1 0.3969 5.2550 0.3650 34 1 0.4116 7.5100 -0.9845 35 1 0.1947 7.1008 -2.7032 36 1 -2.9499 8.7758 -2.0787 37 1 3.1830 5.2402 -1.9794 38 1 2.7755 6.9612 -1.7777 39 1 1.4930 6.9062 -3.8993 40 1 1.9004 5.1852 -4.1010 41 1 3.1831 8.5892 -4.2508 42 1 4.0080 7.9054 -2.8284 43 1 6.0341 7.4996 -4.1662 44 1 5.5648 9.2126 -4.2893 45 1 5.5247 6.0265 -6.0758 46 1 4.7115 6.7453 -7.4871 47 1 3.1432 5.4041 -6.0711 48 1 2.6747 7.1196 -6.1552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893863295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -31.340623 kcal Electronic energy + Delta-G solvation = -27950.117908 eV Core-core repulsion = 24132.716395 eV Total energy + Delta-G solvation = -3817.401514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.42818 -40.61376 -38.81590 -36.61880 -34.80200 -33.96674 -32.27377 -31.95523 -30.77362 -29.90674 -28.80920 -27.35659 -25.74596 -25.01448 -23.97442 -22.87102 -21.97147 -21.38220 -21.13949 -19.16320 -18.65924 -17.71454 -17.37946 -17.11958 -16.83866 -16.57290 -16.27066 -16.09904 -15.98055 -15.79749 -15.51666 -15.05666 -14.90385 -14.53696 -14.50617 -14.34299 -14.12795 -14.08986 -13.76845 -13.44383 -13.30957 -13.11748 -12.91396 -12.81527 -12.65914 -12.41264 -12.35227 -12.28600 -11.96041 -11.80706 -11.74679 -11.51093 -11.33558 -11.04180 -10.68281 -10.61875 -10.32858 -9.49269 -9.12252 -8.30003 -8.23694 -6.32161 0.25975 0.59514 0.98666 1.37752 1.39383 1.47699 1.60945 2.36404 2.50950 2.60342 2.94356 3.08616 3.42193 3.83791 3.91163 3.99984 4.01424 4.08572 4.09282 4.17294 4.18350 4.22471 4.26359 4.33164 4.40165 4.48054 4.58103 4.60481 4.70078 4.71599 4.80780 4.80987 4.83349 4.89611 4.91525 4.94280 4.98417 5.01176 5.14542 5.18832 5.57081 5.61375 5.84282 5.91560 6.00051 6.08937 6.16231 6.23620 6.54172 6.81487 7.36612 8.86451 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006228 B = 0.004271 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4494.575593 B = 6553.544538 C =10063.316200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.025 6.025 3 C -0.059 4.059 4 C -0.176 4.176 5 C -0.192 4.192 6 C 0.005 3.995 7 C 0.140 3.860 8 N -0.541 5.541 9 C 0.210 3.790 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.930 5.930 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.069 3.931 19 C 0.072 3.928 20 N -0.531 5.531 21 C 0.012 3.988 22 C 0.070 3.930 23 O -0.405 6.405 24 C 0.069 3.931 25 C 0.014 3.986 26 O -0.186 6.186 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.077 0.923 33 H 0.076 0.924 34 H -0.032 1.032 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.333 -10.243 -0.140 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.211 5.789 3 C -0.219 4.219 4 C -0.203 4.203 5 C -0.213 4.213 6 C -0.049 4.049 7 C 0.012 3.988 8 N -0.267 5.267 9 C 0.085 3.915 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.190 4.190 13 N -0.570 5.570 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.059 4.059 19 C -0.056 4.056 20 N -0.257 5.257 21 C -0.117 4.117 22 C -0.007 4.007 23 O -0.324 6.324 24 C -0.008 4.008 25 C -0.114 4.114 26 O -0.084 6.084 27 H 0.158 0.842 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.192 0.808 31 H 0.188 0.812 32 H 0.095 0.905 33 H 0.095 0.905 34 H -0.014 1.014 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.031 0.969 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.113 0.887 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 14.745 -11.707 -0.433 18.832 hybrid contribution -2.509 2.312 0.465 3.443 sum 12.236 -9.395 0.032 15.427 Atomic orbital electron populations 1.23688 0.92972 1.08680 1.06270 1.85267 1.08388 0.91743 1.93497 1.24707 0.91702 0.93330 1.12183 1.21779 0.96934 0.93852 1.07780 1.21748 0.95293 0.96345 1.07933 1.22612 0.91695 0.85785 1.04855 1.20324 1.00566 0.87512 0.90400 1.61826 1.08976 1.41847 1.14002 1.19430 0.89813 0.87227 0.95074 1.21371 0.92017 0.97582 1.45135 0.92565 1.25785 1.03044 0.95113 0.95062 1.70060 1.31731 1.09162 1.46066 0.85569 0.78796 0.78022 0.79078 1.19312 1.20748 1.19632 1.21976 0.91387 0.99162 0.93356 1.21903 0.89008 0.99808 0.94856 1.62228 1.29968 1.25620 1.07867 1.22912 0.98025 0.88842 1.01882 1.22749 0.94635 1.03306 0.80013 1.87942 1.88977 1.32729 1.22739 1.22770 0.93417 0.84411 1.00195 1.22882 0.98787 1.02417 0.87336 1.84228 1.37479 1.14470 1.72186 0.84202 0.89787 0.90208 0.80849 0.81215 0.90536 0.90534 1.01435 0.96550 0.92681 0.89457 0.95421 0.96852 0.91052 0.96001 0.89098 0.91049 0.86803 0.91186 0.86485 0.88664 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.47 113.37 1.19 -1.78 16 2 S -0.03 -0.59 22.75 -56.49 -1.29 -1.88 16 3 C -0.06 -1.78 7.35 67.17 0.49 -1.29 16 4 C -0.18 -4.77 10.88 22.40 0.24 -4.52 16 5 C -0.19 -5.48 9.74 22.18 0.22 -5.26 16 6 C 0.00 0.17 6.37 24.82 0.16 0.33 16 7 C 0.14 5.30 5.35 85.56 0.46 5.76 16 8 N -0.54 -22.93 4.38 -905.36 -3.96 -26.90 16 9 C 0.21 10.84 4.60 85.56 0.39 11.23 16 10 C -0.52 -29.27 8.39 25.60 0.21 -29.05 16 11 H 0.06 3.16 7.56 -2.91 -0.02 3.14 16 12 C 0.01 0.48 5.45 84.65 0.46 0.94 16 13 N -0.93 -55.12 13.29 21.45 0.29 -54.83 16 14 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 C 0.07 2.45 4.72 86.31 0.41 2.86 16 19 C 0.07 2.57 4.92 86.31 0.42 2.99 16 20 N -0.53 -15.44 4.73 -895.21 -4.23 -19.67 16 21 C 0.01 0.32 5.44 86.32 0.47 0.79 16 22 C 0.07 1.51 7.01 72.02 0.50 2.02 16 23 O -0.41 -10.02 10.83 -148.98 -1.61 -11.64 16 24 C 0.07 1.43 7.01 72.02 0.50 1.94 16 25 C 0.01 0.36 5.64 86.31 0.49 0.85 16 26 O -0.19 -6.75 10.35 -6.99 -0.07 -6.82 16 27 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.08 2.56 8.01 -2.39 -0.02 2.54 16 33 H 0.08 3.25 6.95 -2.39 -0.02 3.24 16 34 H -0.03 -1.75 8.06 -2.39 -0.02 -1.77 16 35 H 0.02 0.93 5.95 -2.39 -0.01 0.91 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.09 2.84 6.56 -2.39 -0.02 2.83 16 38 H 0.03 0.96 6.49 -2.39 -0.02 0.94 16 39 H 0.01 0.56 6.26 -2.39 -0.01 0.55 16 40 H 0.07 2.63 8.04 -2.38 -0.02 2.61 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 2.37 6.38 -2.39 -0.02 2.36 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.12 1.90 8.14 -2.38 -0.02 1.89 16 47 H 0.10 2.22 8.09 -2.39 -0.02 2.21 16 48 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -66.62 396.60 -1.29 -67.91 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.94 Total: 19.92 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 6.62 Total: -12.21 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -7.91 Total: -101.40 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.69 Total: -18.46 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.29 Total: -1.88 kcal Total: -66.62 -1.29 -67.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893863295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds