Wall clock time and date at job start Tue Mar 31 2020 23:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21650 * 120.00456 * 180.02562 * 16 15 14 18 18 C 1.47279 * 120.00039 * 0.02562 * 16 15 14 19 19 C 1.38436 * 120.03048 * 179.97438 * 18 16 15 20 20 C 1.40657 * 118.26820 * 179.97438 * 19 18 16 21 21 C 1.38262 * 133.39851 * 179.97438 * 20 19 18 22 22 C 1.39680 * 106.99613 * 180.02562 * 21 20 19 23 23 C 1.35643 * 108.07948 * 0.02562 * 22 21 20 24 24 N 1.35915 * 109.06679 * 359.97438 * 23 22 21 25 25 C 1.36903 * 132.42911 * 179.97438 * 24 23 22 26 26 N 1.29790 * 121.47431 * 179.75334 * 25 24 23 27 27 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 28 28 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 29 29 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 30 30 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 31 31 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 32 32 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 33 33 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 34 34 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 35 35 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 36 36 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 37 37 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 38 38 H 1.07998 * 120.86672 * 359.95790 * 19 18 16 39 39 H 1.08001 * 126.50436 * 0.02562 * 21 20 19 40 40 H 1.07996 * 125.95555 * 179.97438 * 22 21 20 41 41 H 1.08003 * 125.46944 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.25847 * 0.04516 * 25 24 23 43 43 H 1.08997 * 113.79514 * 221.44885 * 27 15 14 44 44 H 1.08994 * 113.79584 * 89.97354 * 27 15 14 45 45 H 1.09002 * 109.63459 * 248.30727 * 28 9 7 46 46 H 1.09000 * 109.64288 * 8.91958 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8471 2.4946 18 6 5.3122 -6.1241 3.6094 19 6 6.0479 -6.9989 4.3904 20 6 6.9557 -6.4599 5.3198 21 6 7.8260 -7.0236 6.2343 22 6 8.4739 -5.9705 6.8841 23 6 8.0029 -4.8062 6.3718 24 7 7.0766 -5.0840 5.4167 25 6 6.3136 -4.2836 4.6096 26 7 5.4812 -4.7855 3.7494 27 6 2.6137 -5.9569 0.8092 28 6 1.8061 -3.6627 0.0013 29 1 -0.4849 -0.8358 -0.0839 30 1 0.2917 -1.2069 1.8678 31 1 -0.5551 -2.6052 1.1597 32 1 0.0287 -3.0912 3.4924 33 1 1.7352 -2.7012 3.1675 34 1 0.1333 -4.9470 1.8567 35 1 1.3747 -5.1502 3.1167 36 1 4.2501 -3.9002 1.0263 37 1 3.5755 -3.8085 2.7125 38 1 5.9278 -8.0674 4.2888 39 1 7.9763 -8.0781 6.4125 40 1 9.2193 -6.0666 7.6597 41 1 8.3139 -3.8172 6.6742 42 1 6.4098 -3.2108 4.6871 43 1 1.8842 -6.7388 1.0201 44 1 3.0271 -6.0191 -0.1974 45 1 0.9771 -4.0989 -0.5560 46 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981838195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:56 Heat of formation + Delta-G solvation = 114.643345 kcal Electronic energy + Delta-G solvation = -29611.164033 eV Core-core repulsion = 25696.941659 eV Total energy + Delta-G solvation = -3914.222374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.66045 -40.59923 -38.68413 -37.42330 -36.03460 -33.39684 -32.82674 -31.36048 -30.70698 -29.99332 -28.59082 -26.16426 -25.97654 -25.19536 -24.46850 -23.22497 -22.33526 -21.49001 -20.74730 -19.74695 -18.52293 -17.86823 -17.36679 -17.28715 -16.35840 -16.13052 -15.97423 -15.52008 -15.34688 -14.62387 -14.49210 -14.11448 -13.98941 -13.75658 -13.58440 -13.17718 -13.12668 -12.92860 -12.77605 -12.64607 -12.49141 -12.33018 -11.90905 -11.72535 -11.39264 -11.03458 -10.89383 -10.73836 -10.63960 -10.41835 -10.25992 -10.11685 -9.99859 -9.76642 -9.67984 -9.29244 -9.26616 -8.55560 -8.36614 -7.80546 -6.88609 -6.07856 -3.24735 0.15340 0.89769 2.23727 2.52264 2.59550 2.87426 3.49226 3.51667 3.54420 3.64787 3.69541 4.19635 4.29201 4.49312 4.51870 4.68237 4.84796 4.90015 5.08413 5.12988 5.21840 5.24742 5.31142 5.35807 5.49609 5.58957 5.64026 5.69829 5.76942 5.78015 5.85146 5.97242 6.01890 6.12539 6.20043 6.25431 6.34663 6.37055 6.43556 6.49861 6.60390 6.67859 6.75072 6.76522 7.08297 7.20474 7.37612 7.79360 7.98725 8.17410 8.56444 9.09604 9.82922 10.27897 11.20546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003127 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.957812 B = 8951.413931 C =10356.443142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.346 4.346 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.149 3.851 11 C -0.135 4.135 12 C -0.081 4.081 13 C -0.108 4.108 14 C 0.140 3.860 15 N -0.621 5.621 16 C 0.594 3.406 17 O -0.550 6.550 18 C 0.020 3.980 19 C -0.045 4.045 20 C 0.026 3.974 21 C -0.174 4.174 22 C -0.148 4.148 23 C -0.027 4.027 24 N -0.388 5.388 25 C 0.307 3.693 26 N -0.457 5.457 27 C 0.115 3.885 28 C 0.165 3.835 29 H 0.270 0.730 30 H 0.080 0.920 31 H 0.015 0.985 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.209 0.791 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.022 0.978 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.802 -10.535 12.270 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.475 4.475 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.174 4.174 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.019 3.981 15 N -0.353 5.353 16 C 0.383 3.617 17 O -0.430 6.430 18 C -0.098 4.098 19 C -0.067 4.067 20 C -0.079 4.079 21 C -0.200 4.200 22 C -0.170 4.170 23 C -0.158 4.158 24 N -0.060 5.060 25 C 0.025 3.975 26 N -0.169 5.169 27 C -0.008 4.008 28 C 0.038 3.962 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.226 0.774 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.040 0.960 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.945 -9.031 11.582 19.578 hybrid contribution 0.793 -2.127 0.425 2.310 sum 13.738 -11.158 12.008 21.388 Atomic orbital electron populations 1.70716 1.06653 1.30435 1.47885 1.25800 0.96510 1.01400 0.98872 0.83501 0.74386 0.75714 0.76655 1.21834 1.22200 1.21734 1.19976 0.97393 0.88275 1.41889 0.92605 1.44082 1.46471 1.00890 1.40376 1.20840 0.90325 0.99386 0.87166 1.21980 1.00833 0.95236 0.99351 1.21088 0.96869 0.97601 0.96341 1.22657 0.95293 0.94143 0.98952 1.23193 0.94644 0.78477 1.01812 1.49946 1.39552 1.09371 1.36450 1.17046 0.79195 0.84974 0.80479 1.90799 1.67558 1.14335 1.70286 1.20803 1.00512 0.88337 1.00131 1.21654 0.91624 1.02097 0.91345 1.18891 1.03492 0.82507 1.02965 1.21149 0.99885 0.99805 0.99130 1.21053 1.02478 0.91218 1.02274 1.22017 0.96983 1.01076 0.95769 1.43241 1.28171 1.07862 1.26749 1.24949 0.87939 0.97656 0.86969 1.68382 1.16853 1.14004 1.17630 1.23306 0.88373 0.98065 0.91028 1.20762 0.97973 0.86100 0.91367 0.91904 0.90175 0.96663 0.93011 0.92301 0.92193 0.93262 0.89875 0.89121 0.82080 0.83148 0.83057 0.80591 0.77435 0.90278 0.89587 0.96036 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.62 12.39 55.49 0.69 -25.93 16 2 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 3 Si 1.07 24.46 29.99 -169.99 -5.10 19.36 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.35 -9.12 9.50 -15.06 -0.14 -9.26 16 8 H 0.06 1.48 7.94 -52.49 -0.42 1.06 16 9 N -0.59 -13.90 2.86 -172.75 -0.49 -14.39 16 10 C 0.15 3.31 4.62 -4.00 -0.02 3.29 16 11 C -0.13 -2.44 5.99 -26.80 -0.16 -2.60 16 12 C -0.08 -1.34 5.02 -26.83 -0.13 -1.47 16 13 C -0.11 -1.77 0.87 -154.43 -0.13 -1.90 16 14 C 0.14 2.26 6.56 -3.17 -0.02 2.24 16 15 N -0.62 -9.95 3.45 -181.81 -0.63 -10.57 16 16 C 0.59 9.96 8.01 -12.59 -0.10 9.86 16 17 O -0.55 -10.39 17.07 5.23 0.09 -10.30 16 18 C 0.02 0.29 6.78 -82.43 -0.56 -0.27 16 19 C -0.04 -0.57 9.72 -38.60 -0.38 -0.95 16 20 C 0.03 0.30 6.78 -83.95 -0.57 -0.27 16 21 C -0.17 -1.60 10.98 -39.03 -0.43 -2.02 16 22 C -0.15 -1.11 10.80 -39.97 -0.43 -1.54 16 23 C -0.03 -0.20 11.61 -16.67 -0.19 -0.40 16 24 N -0.39 -3.89 2.95 -62.17 -0.18 -4.07 16 25 C 0.31 3.13 12.16 -89.23 -1.09 2.04 16 26 N -0.46 -6.08 7.92 -10.43 -0.08 -6.17 16 27 C 0.11 1.71 7.97 -3.18 -0.03 1.69 16 28 C 0.16 3.20 5.71 -3.81 -0.02 3.18 16 29 H 0.27 7.90 6.77 -40.82 -0.28 7.62 16 30 H 0.08 2.02 6.23 -51.93 -0.32 1.70 16 31 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.10 7.37 -51.93 -0.38 0.72 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.79 8.02 -51.93 -0.42 0.38 16 36 H 0.08 1.37 7.97 -51.93 -0.41 0.95 16 37 H 0.09 1.51 6.41 -51.93 -0.33 1.18 16 38 H 0.16 1.90 7.66 -52.49 -0.40 1.50 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.18 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 44 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.14 7.78 -51.93 -0.40 0.74 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -32.79 372.63 -10.95 -43.74 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.38 Total: 1.84 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -4.48 Total: 0.88 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.70 Total: -61.14 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.10 Total: 19.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.79 -10.95 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981838195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.383 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds