Wall clock time and date at job start Tue Mar 31 2020 23:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21650 * 120.00456 * 180.02562 * 16 15 14 18 18 C 1.47279 * 120.00039 * 0.02562 * 16 15 14 19 19 C 1.38436 * 120.03048 * 179.97438 * 18 16 15 20 20 C 1.40657 * 118.26820 * 179.97438 * 19 18 16 21 21 C 1.38262 * 133.39851 * 179.97438 * 20 19 18 22 22 C 1.39680 * 106.99613 * 180.02562 * 21 20 19 23 23 C 1.35643 * 108.07948 * 0.02562 * 22 21 20 24 24 N 1.35915 * 109.06679 * 359.97438 * 23 22 21 25 25 C 1.36903 * 132.42911 * 179.97438 * 24 23 22 26 26 N 1.29790 * 121.47431 * 179.75334 * 25 24 23 27 27 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 28 28 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 29 29 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 30 30 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 31 31 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 32 32 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 33 33 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 34 34 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 35 35 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 36 36 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 37 37 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 38 38 H 1.07998 * 120.86672 * 359.95790 * 19 18 16 39 39 H 1.08001 * 126.50436 * 0.02562 * 21 20 19 40 40 H 1.07996 * 125.95555 * 179.97438 * 22 21 20 41 41 H 1.08003 * 125.46944 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.25847 * 0.04516 * 25 24 23 43 43 H 1.08997 * 113.79514 * 221.44885 * 27 15 14 44 44 H 1.08994 * 113.79584 * 89.97354 * 27 15 14 45 45 H 1.09002 * 109.63459 * 248.30727 * 28 9 7 46 46 H 1.09000 * 109.64288 * 8.91958 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2035 -7.8471 2.4946 18 6 5.3122 -6.1241 3.6094 19 6 6.0479 -6.9989 4.3904 20 6 6.9557 -6.4599 5.3198 21 6 7.8260 -7.0236 6.2343 22 6 8.4739 -5.9705 6.8841 23 6 8.0029 -4.8062 6.3718 24 7 7.0766 -5.0840 5.4167 25 6 6.3136 -4.2836 4.6096 26 7 5.4812 -4.7855 3.7494 27 6 2.6137 -5.9569 0.8092 28 6 1.8061 -3.6627 0.0013 29 1 -0.4849 -0.8358 -0.0839 30 1 0.2917 -1.2069 1.8678 31 1 -0.5551 -2.6052 1.1597 32 1 0.0287 -3.0912 3.4924 33 1 1.7352 -2.7012 3.1675 34 1 0.1333 -4.9470 1.8567 35 1 1.3747 -5.1502 3.1167 36 1 4.2501 -3.9002 1.0263 37 1 3.5755 -3.8085 2.7125 38 1 5.9278 -8.0674 4.2888 39 1 7.9763 -8.0781 6.4125 40 1 9.2193 -6.0666 7.6597 41 1 8.3139 -3.8172 6.6742 42 1 6.4098 -3.2108 4.6871 43 1 1.8842 -6.7388 1.0201 44 1 3.0271 -6.0191 -0.1974 45 1 0.9771 -4.0989 -0.5560 46 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981838195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:55 Heat of formation + Delta-G solvation = 97.873586 kcal Electronic energy + Delta-G solvation = -29611.891224 eV Core-core repulsion = 25696.941659 eV Total energy + Delta-G solvation = -3914.949565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.37725 -41.90065 -39.90538 -38.36424 -37.68042 -34.57087 -34.20238 -32.42663 -32.10490 -31.44644 -29.53709 -27.41215 -27.28920 -27.05686 -25.27941 -24.17707 -24.00105 -22.39852 -22.05743 -20.86429 -19.49221 -19.27450 -19.22273 -18.30245 -17.42139 -17.13159 -16.90349 -16.59940 -16.30092 -16.21215 -15.85905 -15.44113 -15.32421 -15.26887 -15.02775 -14.69471 -14.31645 -13.96903 -13.73014 -13.54595 -13.49186 -13.34113 -13.31293 -13.24098 -12.89617 -12.71054 -12.49921 -12.00181 -11.84636 -11.80513 -11.73720 -11.67292 -11.61829 -11.33184 -11.04604 -10.88554 -10.38562 -9.94998 -9.82373 -8.85067 -8.58383 -8.16971 -5.32466 -0.71727 0.15277 1.51692 1.56975 1.63312 1.69884 1.71037 1.86043 1.93665 2.57527 2.69757 2.82196 3.16176 3.30154 3.40869 3.58514 3.67600 3.77228 3.84978 3.91991 4.01233 4.19274 4.21858 4.26518 4.33947 4.41621 4.47145 4.55037 4.59110 4.59971 4.66654 4.71254 4.84519 4.88014 4.93625 4.99561 5.03774 5.13202 5.18500 5.20725 5.26328 5.35773 5.49703 5.50463 5.72302 5.91808 6.14529 6.46412 6.53490 6.55015 6.97335 7.11642 7.84159 8.29521 9.08120 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.003127 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.957812 B = 8951.413931 C =10356.443142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.076 4.076 3 Si 1.115 2.885 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.289 1.289 7 C -0.343 4.343 8 H 0.053 0.947 9 N -0.610 5.610 10 C 0.156 3.844 11 C -0.122 4.122 12 C -0.074 4.074 13 C -0.101 4.101 14 C 0.152 3.848 15 N -0.622 5.622 16 C 0.590 3.410 17 O -0.583 6.583 18 C -0.017 4.017 19 C -0.037 4.037 20 C -0.018 4.018 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.005 4.005 24 N -0.398 5.398 25 C 0.316 3.684 26 N -0.487 5.487 27 C 0.118 3.882 28 C 0.166 3.834 29 H 0.255 0.745 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.183 0.817 41 H 0.216 0.784 42 H 0.246 0.754 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.021 0.979 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.439 -10.368 14.432 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.272 4.272 3 Si 0.940 3.060 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.216 1.216 7 C -0.473 4.473 8 H 0.071 0.929 9 N -0.334 5.334 10 C 0.030 3.970 11 C -0.161 4.161 12 C -0.111 4.111 13 C -0.104 4.104 14 C 0.030 3.970 15 N -0.354 5.354 16 C 0.381 3.619 17 O -0.465 6.465 18 C -0.133 4.133 19 C -0.059 4.059 20 C -0.121 4.121 21 C -0.189 4.189 22 C -0.177 4.177 23 C -0.137 4.137 24 N -0.072 5.072 25 C 0.034 3.966 26 N -0.200 5.200 27 C -0.004 4.004 28 C 0.040 3.960 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.200 0.800 41 H 0.233 0.767 42 H 0.262 0.738 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.039 0.961 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.587 -8.905 13.738 22.605 hybrid contribution 0.148 -2.233 -0.102 2.240 sum 15.736 -11.138 13.636 23.614 Atomic orbital electron populations 1.70839 1.07664 1.29496 1.50907 1.27054 0.96549 1.04650 0.98983 0.82862 0.74453 0.72307 0.76363 1.19574 1.22395 1.21588 1.20203 0.97145 0.89372 1.40581 0.92912 1.44277 1.46485 1.01656 1.41005 1.20688 0.89818 0.98144 0.88353 1.21812 1.01088 0.95374 0.97805 1.21018 0.97146 0.96402 0.96555 1.22478 0.95581 0.94555 0.97747 1.23016 0.93998 0.78628 1.01349 1.49926 1.39669 1.09191 1.36587 1.17443 0.79248 0.84612 0.80599 1.90757 1.68815 1.15513 1.71434 1.20474 1.01937 0.89462 1.01435 1.21693 0.91331 1.01811 0.91107 1.19016 1.05014 0.83675 1.04388 1.21606 0.98371 1.01232 0.97675 1.21531 1.02873 0.90488 1.02764 1.22860 0.94485 1.02980 0.93354 1.43421 1.28919 1.07319 1.27499 1.25606 0.86514 0.98921 0.85604 1.68275 1.18839 1.13299 1.19589 1.23333 0.88400 0.97008 0.91641 1.20827 0.97735 0.84791 0.92624 0.93528 0.93601 0.97857 0.91134 0.92729 0.91548 0.92369 0.90380 0.89483 0.82449 0.81692 0.79977 0.76742 0.73827 0.89547 0.88289 0.96089 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 12.39 21.65 0.27 -56.17 16 2 C -0.08 -4.19 4.69 84.86 0.40 -3.79 16 3 Si 1.11 49.50 29.99 68.60 2.06 51.56 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.34 -18.24 9.50 84.03 0.80 -17.44 16 8 H 0.05 2.80 7.94 -2.91 -0.02 2.77 16 9 N -0.61 -28.87 2.86 -700.46 -2.00 -30.87 16 10 C 0.16 7.06 4.62 86.19 0.40 7.46 16 11 C -0.12 -4.35 5.99 30.55 0.18 -4.17 16 12 C -0.07 -2.35 5.02 30.53 0.15 -2.19 16 13 C -0.10 -3.26 0.87 -52.04 -0.05 -3.31 16 14 C 0.15 4.84 6.56 86.30 0.57 5.41 16 15 N -0.62 -19.87 3.45 -847.36 -2.92 -22.79 16 16 C 0.59 20.15 8.01 86.62 0.69 20.85 16 17 O -0.58 -22.59 17.07 -4.19 -0.07 -22.66 16 18 C -0.02 -0.50 6.78 40.98 0.28 -0.23 16 19 C -0.04 -0.95 9.72 22.91 0.22 -0.72 16 20 C -0.02 -0.37 6.78 38.69 0.26 -0.11 16 21 C -0.16 -2.56 10.98 22.62 0.25 -2.31 16 22 C -0.15 -1.69 10.80 22.02 0.24 -1.45 16 23 C -0.01 -0.06 11.61 83.46 0.97 0.91 16 24 N -0.40 -6.96 2.95 -350.61 -1.04 -7.99 16 25 C 0.32 5.79 12.16 179.86 2.19 7.98 16 26 N -0.49 -12.71 7.92 -186.90 -1.48 -14.19 16 27 C 0.12 3.45 7.97 86.30 0.69 4.14 16 28 C 0.17 6.44 5.71 86.20 0.49 6.94 16 29 H 0.25 15.50 6.77 -92.71 -0.63 14.87 16 30 H 0.05 2.39 6.23 -2.39 -0.01 2.37 16 31 H 0.00 0.16 7.94 -2.38 -0.02 0.14 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.00 7.37 -2.38 -0.02 1.98 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.80 8.02 -2.38 -0.02 1.78 16 36 H 0.08 2.56 7.97 -2.39 -0.02 2.54 16 37 H 0.09 2.86 6.41 -2.39 -0.02 2.84 16 38 H 0.16 3.90 7.66 -2.91 -0.02 3.88 16 39 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.22 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.25 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.09 2.42 8.09 -2.39 -0.02 2.40 16 44 H 0.10 2.63 8.09 -2.39 -0.02 2.61 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 Total: -1.00 -73.62 372.63 4.68 -68.95 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.13 Total: 16.22 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 8.73 Total: 17.95 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -7.17 Total: -132.02 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.06 Total: 51.56 kcal Total: -73.62 4.68 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981838195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.821 kcal (2) G-P(sol) polarization free energy of solvation -73.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds