Wall clock time and date at job start Tue Mar 31 2020 23:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48495 * 109.47475 * 274.26489 * 3 2 1 5 5 H 1.48501 * 109.47126 * 34.26672 * 3 2 1 6 6 H 1.48502 * 109.46821 * 154.26572 * 3 2 1 7 7 C 1.38809 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00100 * 189.07606 * 7 2 1 9 9 N 1.36938 * 119.99932 * 9.06648 * 7 2 1 10 10 C 1.47364 * 125.57781 * 10.98568 * 9 7 2 11 11 C 1.54872 * 104.82123 * 155.28039 * 10 9 7 12 12 C 1.54910 * 101.76791 * 37.07093 * 11 10 9 13 13 N 1.46501 * 112.77835 * 86.44853 * 12 11 10 14 14 C 1.34779 * 119.99594 * 62.70326 * 13 12 11 15 15 O 1.21642 * 120.00114 * 359.97438 * 14 13 12 16 16 C 1.47170 * 119.99478 * 180.02562 * 14 13 12 17 17 C 1.38580 * 120.72916 * 359.97438 * 16 14 13 18 18 C 1.38928 * 121.36265 * 179.97438 * 17 16 14 19 19 C 1.35817 * 122.59695 * 0.02562 * 18 17 16 20 20 C 1.40840 * 120.56076 * 0.02562 * 19 18 17 21 21 C 1.38418 * 134.90063 * 179.97438 * 20 19 18 22 22 N 1.33900 * 107.84207 * 179.28144 * 21 20 19 23 23 H 0.97003 * 125.01900 * 180.02562 * 22 21 20 24 24 N 1.39980 * 109.96149 * 0.63551 * 22 21 20 25 25 C 1.31477 * 109.01229 * 359.44972 * 24 22 21 26 26 C 1.53580 * 109.09629 * 211.88576 * 12 11 10 27 27 C 1.54230 * 106.71401 * 113.06569 * 26 12 11 28 28 C 1.54832 * 104.12271 * 335.10663 * 27 26 12 29 29 C 1.46983 * 125.58027 * 190.95301 * 9 7 2 30 30 H 1.08995 * 111.81311 * 59.10205 * 29 9 7 31 31 H 0.97006 * 119.99713 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.36966 * 274.11291 * 10 9 7 33 33 H 1.09003 * 110.37611 * 36.33126 * 10 9 7 34 34 H 1.09007 * 110.96311 * 278.95283 * 11 10 9 35 35 H 1.09004 * 110.96942 * 155.19620 * 11 10 9 36 36 H 0.96999 * 120.00057 * 242.70086 * 13 12 11 37 37 H 1.08000 * 119.31796 * 0.02562 * 17 16 14 38 38 H 1.08010 * 118.69666 * 180.02562 * 18 17 16 39 39 H 1.08011 * 119.72261 * 180.02562 * 19 18 17 40 40 H 1.08002 * 126.07787 * 359.97213 * 21 20 19 41 41 H 1.08990 * 110.02091 * 232.39396 * 26 12 11 42 42 H 1.08997 * 110.01861 * 353.74252 * 26 12 11 43 43 H 1.09000 * 110.49398 * 93.74702 * 27 26 12 44 44 H 1.08997 * 110.49260 * 216.41493 * 27 26 12 45 45 H 1.08999 * 110.63803 * 279.33383 * 28 27 26 46 46 H 1.08998 * 110.82209 * 156.27734 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4076 2.0985 -1.3961 5 1 1.4957 2.6250 0.7883 6 1 3.5900 1.4157 0.6079 7 6 2.0102 -1.2021 -0.0005 8 1 3.0801 -1.2080 0.1470 9 7 1.3384 -2.3805 -0.1879 10 6 -0.0637 -2.5082 -0.6233 11 6 -0.1489 -3.9086 -1.2793 12 6 0.7892 -4.7410 -0.3700 13 7 0.1036 -5.2867 0.8041 14 6 -0.9071 -6.1644 0.6467 15 8 -1.2502 -6.5031 -0.4701 16 6 -1.5962 -6.7121 1.8261 17 6 -1.2180 -6.3363 3.1053 18 6 -1.8597 -6.8446 4.2277 19 6 -2.8851 -7.7314 4.1455 20 6 -3.3460 -8.1790 2.8922 21 6 -4.3357 -9.0493 2.4690 22 7 -4.3202 -9.0683 1.1302 23 1 -4.9137 -9.5971 0.5742 24 7 -3.3121 -8.2232 0.6519 25 6 -2.7014 -7.6641 1.6732 26 6 1.4626 -5.8356 -1.2108 27 6 2.9649 -5.4911 -1.2663 28 6 3.0101 -3.9602 -1.0388 29 6 1.8978 -3.7250 0.0115 30 1 2.2486 -3.8702 1.0332 31 1 -0.4850 0.8401 0.0004 32 1 -0.7341 -2.4497 0.2343 33 1 -0.3081 -1.7321 -1.3486 34 1 0.2229 -3.8826 -2.3037 35 1 -1.1680 -4.2939 -1.2454 36 1 0.3770 -5.0163 1.6946 37 1 -0.4083 -5.6330 3.2321 38 1 -1.5300 -6.5218 5.2043 39 1 -3.3511 -8.0965 5.0489 40 1 -5.0088 -9.6048 3.1052 41 1 1.3201 -6.8083 -0.7403 42 1 1.0442 -5.8434 -2.2173 43 1 3.5050 -6.0105 -0.4748 44 1 3.3788 -5.7449 -2.2422 45 1 2.7853 -3.4277 -1.9629 46 1 3.9803 -3.6552 -0.6467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992083050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:22 Heat of formation + Delta-G solvation = 68.428949 kcal Electronic energy + Delta-G solvation = -29902.935195 eV Core-core repulsion = 25986.708814 eV Total energy + Delta-G solvation = -3916.226380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.20009 -41.49296 -39.49331 -37.72208 -36.00374 -34.73995 -33.42935 -32.97197 -31.93485 -31.20681 -29.82190 -28.41698 -27.49103 -25.72892 -25.59417 -23.50508 -22.74892 -22.19411 -21.50354 -20.53347 -20.20619 -19.03931 -18.84107 -18.32399 -17.70473 -17.04281 -16.85063 -16.27592 -16.20224 -15.85766 -15.50955 -15.38555 -15.03324 -14.95427 -14.74220 -14.50890 -14.10131 -13.83874 -13.53898 -13.24245 -13.02255 -12.93922 -12.81272 -12.69844 -12.63131 -12.57832 -12.28838 -12.00369 -11.89579 -11.72263 -11.66263 -11.48869 -11.42417 -11.25504 -11.23803 -10.66342 -10.60198 -9.96883 -9.81027 -8.82619 -8.61074 -7.82864 -5.18860 -0.59307 0.87612 1.21612 1.48066 1.50208 1.58791 1.85121 2.10561 2.21857 2.52543 2.95420 3.31162 3.35786 3.36647 3.62998 3.65309 3.94831 3.96017 3.97966 4.17391 4.26696 4.35353 4.39530 4.45802 4.48040 4.52376 4.59709 4.63298 4.71539 4.80698 4.89667 4.95438 4.99035 5.09653 5.16651 5.22951 5.30775 5.34895 5.43719 5.47216 5.54327 5.58135 5.61878 5.68637 5.77431 5.92442 6.21949 6.30641 6.62387 6.69745 7.09734 7.37015 7.79180 8.47181 9.28879 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.003141 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.804891 B = 8911.975288 C = 9664.745737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.191 3.809 11 C -0.131 4.131 12 C 0.173 3.827 13 N -0.701 5.701 14 C 0.555 3.445 15 O -0.565 6.565 16 C -0.174 4.174 17 C -0.009 4.009 18 C -0.193 4.193 19 C 0.016 3.984 20 C -0.253 4.253 21 C 0.135 3.865 22 N -0.424 5.424 23 H 0.458 0.542 24 N -0.344 5.344 25 C 0.111 3.889 26 C -0.104 4.104 27 C -0.108 4.108 28 C -0.122 4.122 29 C 0.155 3.845 30 H 0.059 0.941 31 H 0.245 0.755 32 H -0.008 1.008 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.405 0.595 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.253 0.747 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -22.156 11.335 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.358 4.358 8 H 0.104 0.896 9 N -0.333 5.333 10 C 0.066 3.934 11 C -0.171 4.171 12 C 0.086 3.914 13 N -0.352 5.352 14 C 0.345 3.655 15 O -0.445 6.445 16 C -0.181 4.181 17 C -0.031 4.031 18 C -0.212 4.212 19 C -0.004 4.004 20 C -0.263 4.263 21 C -0.024 4.024 22 N -0.125 5.125 23 H 0.306 0.694 24 N -0.170 5.170 25 C -0.046 4.046 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.162 4.162 29 C 0.048 3.952 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.010 0.990 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.242 0.758 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.269 0.731 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.063 -22.252 9.203 24.832 hybrid contribution -0.194 1.429 0.392 1.495 sum -6.257 -20.823 9.596 23.766 Atomic orbital electron populations 1.70195 1.06555 1.25190 1.58058 1.25666 0.96342 1.01143 1.02821 0.85095 0.78029 0.79383 0.77032 1.21941 1.22520 1.18726 1.19391 0.91565 0.83521 1.41349 0.89607 1.44686 1.09479 1.00732 1.78420 1.21014 0.85580 0.92190 0.94640 1.23124 0.99132 0.96365 0.98456 1.21420 0.91605 0.92599 0.85774 1.45717 1.35231 1.44761 1.09526 1.18369 0.79379 0.78569 0.89207 1.90760 1.65672 1.61085 1.27006 1.19865 1.00280 1.04434 0.93481 1.21596 0.96539 0.94275 0.90717 1.20709 0.99692 1.01931 0.98905 1.20839 0.92536 0.91558 0.95501 1.20137 1.03911 1.07584 0.94641 1.23766 0.97123 0.96244 0.85305 1.46628 1.26209 1.32980 1.06655 0.69410 1.77781 1.05782 1.12916 1.20550 1.21822 0.95137 0.95656 0.92000 1.22188 0.96133 0.96934 0.99078 1.22311 0.94485 0.94970 1.02811 1.22793 0.98671 0.95959 0.98818 1.22053 0.92110 0.83798 0.97202 0.92383 0.94604 0.99004 0.95214 0.91345 0.92742 0.75763 0.84050 0.82247 0.80912 0.73089 0.92181 0.92264 0.89943 0.90195 0.92955 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 10.69 21.65 0.23 -58.41 16 2 C -0.07 -3.82 5.40 84.86 0.46 -3.36 16 3 Si 0.98 46.10 29.56 68.60 2.03 48.13 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.23 -12.66 9.97 84.03 0.84 -11.83 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 N -0.61 -31.30 3.03 -663.68 -2.01 -33.31 16 10 C 0.19 10.24 5.42 86.85 0.47 10.71 16 11 C -0.13 -6.00 5.75 31.89 0.18 -5.82 16 12 C 0.17 6.73 0.74 5.18 0.00 6.74 16 13 N -0.70 -25.14 5.19 -419.24 -2.18 -27.32 16 14 C 0.55 21.39 6.95 86.59 0.60 21.99 16 15 O -0.57 -25.85 14.19 -4.16 -0.06 -25.91 16 16 C -0.17 -5.61 6.05 -18.65 -0.11 -5.72 16 17 C -0.01 -0.21 9.50 22.52 0.21 0.00 16 18 C -0.19 -3.20 9.83 21.87 0.21 -2.98 16 19 C 0.02 0.22 10.02 22.34 0.22 0.44 16 20 C -0.25 -4.90 6.34 -20.25 -0.13 -5.02 16 21 C 0.13 1.49 12.08 84.42 1.02 2.51 16 22 N -0.42 -7.29 7.18 -56.28 -0.40 -7.69 16 23 H 0.46 4.15 8.96 -213.39 -1.91 2.24 16 24 N -0.34 -11.02 12.24 -45.22 -0.55 -11.58 16 25 C 0.11 3.46 7.27 43.75 0.32 3.78 16 26 C -0.10 -3.60 5.26 31.21 0.16 -3.44 16 27 C -0.11 -3.11 6.84 31.64 0.22 -2.89 16 28 C -0.12 -4.35 6.21 31.83 0.20 -4.15 16 29 C 0.16 6.32 3.67 46.24 0.17 6.49 16 30 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 31 H 0.24 14.76 8.31 -92.70 -0.77 13.99 16 32 H -0.01 -0.47 8.07 -2.38 -0.02 -0.49 16 33 H 0.03 1.78 6.93 -2.39 -0.02 1.77 16 34 H 0.07 3.06 7.62 -2.38 -0.02 3.04 16 35 H 0.05 2.64 6.72 -2.38 -0.02 2.62 16 36 H 0.41 12.63 6.53 -92.71 -0.61 12.03 16 37 H 0.14 2.87 6.38 -2.91 -0.02 2.86 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.25 -0.67 8.06 -2.91 -0.02 -0.70 16 41 H 0.06 2.08 7.49 -2.39 -0.02 2.06 16 42 H 0.06 2.16 7.37 -2.39 -0.02 2.14 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -87.79 367.59 0.63 -87.16 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -1.48 Total: 21.48 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.05 Total: 7.44 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -4.91 Total: -138.31 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -87.79 0.63 -87.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992083050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.593 kcal (2) G-P(sol) polarization free energy of solvation -87.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds